mRNA_L-elsbetiae_contig171.4745.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig171.4745.1 vs. uniprot
Match: D7FSK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK6_ECTSI) HSP 1 Score: 353 bits (907), Expect = 2.690e-108 Identity = 222/387 (57.36%), Postives = 260/387 (67.18%), Query Frame = 1 Query: 1603 GTVAVARLGSHAAGVFVTITDAGHRLLIEARDFEAGPLLATSTVTFEAWTAATGMAALRPPSDNTSCKKILEDKLAALLGAGFRSRTSRLEKKRSARQAQQQQQNGEIREWRGTFLQLSEIEKG-LWQVEEDDSGGETRDASTTGAATQHKQQSSLPPV-SPRNLSPLEQKRALRLEMLTRMIDDFHAKHGRRR--GGXGSRKQRKRSICVSAMPDSAASTGAPGTVHRGLTFTGGDNPAPTAAGSASSASGDGESSAPISTQVLPFHICVCCGTEGGLGHGRRCVHTFRRCGFCRVEEVKRVLGIQDTGRRRRRGTGTSGSVRVSQRPLVA----GDADKEEDEFEWVTDSEEEDPEFECDSCGRVIEDTADRFHCETCDDYDLCQ 2739 GTV +ARLGSHA GVFV +TD G RLLIEARDFE GPLLA STV+ E WTA TG+A L PP+DN + KKILE++LAALLGAGFRSRTSRLE+KR+AR+AQQQ G +R WRGT L+LSE+EKG L Q+EEDD+G E DA+ + LP + SPR+ +PLEQKRALRLEMLTRM+DDFHAKHGR R X KR + A D+ T T + GG + G S +G+ + P HI +GG GHGR+C HTFRRCGFCRVEEV+RVLGI+ GR R S VRV P + D D EE++FEWVTDS+EEDPEFECDSCGRVIEDT+DRFHCETC DYDL Q Sbjct: 2 GTVPIARLGSHAEGVFVVVTDGGRRLLIEARDFERGPLLAKSTVSLEDWTATTGIATLSPPTDNRAFKKILEEQLAALLGAGFRSRTSRLERKRAAREAQQQ--GGGVR-WRGTLLELSEMEKGRLGQLEEDDNGSENNDANPDRPPPK------LPLLLSPRDSTPLEQKRALRLEMLTRMVDDFHAKHGRSRRXXXXXXXXXEKRGVGAPAPGDARDPTTVVATGCDDESAVGGHDGERVREGPVHIVSNEGQDG-----ENDP-HITTANQAKGGRGHGRKCEHTFRRCGFCRVEEVRRVLGIRAPGRTREP-VQESMVVRVPSLPQLKFGDDQDDDNEEEDFEWVTDSDEEDPEFECDSCGRVIEDTSDRFHCETCGDYDLMQ 372
BLAST of mRNA_L-elsbetiae_contig171.4745.1 vs. uniprot
Match: A0A6H5KMB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB6_9PHAE) HSP 1 Score: 306 bits (785), Expect = 1.310e-91 Identity = 185/361 (51.25%), Postives = 221/361 (61.22%), Query Frame = 1 Query: 742 LVKATGGELALSMLRPSRVGPSNGGQDARVPTPGATGTSEGSGSGGAWRGTHQPKHLLRQPRSLTVTWDDWAHLGYGPLQWMSHAQKAFIARLSLYWISLKPPT---ETAHSPEGRVYGHVTKEAFRLPEDAFLHLRPVLYGLSRVVGTRSETLASAVRGGG------------------SPRMPMSTGSDT--NRERLRATRVFVRDEGSILRVEV-EVDGGNVGQSQHGIQRLEQTFGKEVWQETGLGELLWLDCSGRQYLARRLARQVAIDVDGHVESSSGQHAQDYIDEDAKLKLVIVSDLPLPYWAGTVAVARLGSHAAGVFVTITDAGHRLLIEARDFEAGPLLATSTVTFEAWT 1752 +VKATGGEL LS+ +PSR PS GG G G + +GSG + +R+ +L W DWA GYGPLQWMSH QK FIARLSLYW+S + P E ++P V R ++AFLH P+L ++R VG S S+VRG G S R GS+ E R +RV VRDEG +LRVEV E + NVG+S+ G+ L+Q FGKE W+ETGLGELLWLDCS RQYLA RLA+QVAI VD + GQH QD + + K +LVI+SDLPLPYW GTV +ARLGSHA GVFV ITDAG RLLIEARDFE GPLLA STV+ E WT Sbjct: 1 MVKATGGELTLSLFQPSRAAPSTGGTTRPAGVRGR-GAAAANGSGVHSTAGDPGRAAMRRSLTLVAAWADWAEAGYGPLQWMSHEQKVFIARLSLYWVSFRTPARGFEEKNAPNANETP-VRHRRRRTTKEAFLHFHPILSSVTRDVGKSSGAPGSSVRGTGXXXXXXXXXXXXXXXXXTSSRTAPRGGSEIFGGEETSRTSRVLVRDEGGVLRVEVVEAERKNVGRSKSGVSMLDQAFGKESWRETGLGELLWLDCSCRQYLALRLAQQVAIVVDDDRDGRGGQHDQDNVLK-IKPRLVIISDLPLPYWMGTVPIARLGSHAEGVFVMITDAGRRLLIEARDFEGGPLLAKSTVSLEDWT 358
BLAST of mRNA_L-elsbetiae_contig171.4745.1 vs. uniprot
Match: D7FSK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK7_ECTSI) HSP 1 Score: 171 bits (432), Expect = 3.510e-44 Identity = 97/205 (47.32%), Postives = 124/205 (60.49%), Query Frame = 1 Query: 913 LRQPRSLTVTWDDWAHLGYGPLQWMSHAQKAFIARLSLYWISLKPPTETAHSPEGRVYGHVTKEAFRLPEDAFLHLRPVLYGLSRVVGTRSETLASAVRGGGSPRMPMSTGSDTNR-------------ERLRATRVFVRDEGSILRVEV-EVDGGNVGQSQHGIQRLEQTFGKEVWQETGLGELLWLDCSGRQYLARRLARQVA 1485 +R+ SL W DWA GYGPLQWMSH QK FIARLSLYW+S + E ++P V R ++AFLH RP+L ++RVVG + SAV G G + G ++R E R +RVFVRDEG +LRVEV E + N G+ + G+ L++ FGKE W+ETGL ELLWLDCS RQYLA RLA+Q++ Sbjct: 1 MRRSLSLVAAWADWAEAGYGPLQWMSHEQKVFIARLSLYWVSFRRGFEEKNAPTANETP-VQHHRRRTTKEAFLHFRPILSSVTRVVGKSNGDPGSAVPGTGGSGALVVVGGASSRTVPREGSEIFGGGETSRTSRVFVRDEGGVLRVEVVEAERKNGGRPKSGVSILDEAFGKEAWRETGLEELLWLDCSCRQYLALRLAQQLS 204 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig171.4745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig171.4745.1 >prot_L-elsbetiae_contig171.4745.1 ID=prot_L-elsbetiae_contig171.4745.1|Name=mRNA_L-elsbetiae_contig171.4745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=957bp MDDTGLNVLSDSERWHLLNRVRDRIRVSHGLLEMDMGAKLSLQSVRSTSIback to top mRNA from alignment at L-elsbetiae_contig171:11565..20612+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig171.4745.1 ID=mRNA_L-elsbetiae_contig171.4745.1|Name=mRNA_L-elsbetiae_contig171.4745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9048bp|location=Sequence derived from alignment at L-elsbetiae_contig171:11565..20612+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig171:11565..20612+ >mRNA_L-elsbetiae_contig171.4745.1 ID=mRNA_L-elsbetiae_contig171.4745.1|Name=mRNA_L-elsbetiae_contig171.4745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5742bp|location=Sequence derived from alignment at L-elsbetiae_contig171:11565..20612+ (Laminarionema elsbetiae ELsaHSoW15)back to top |