mRNA_L-elsbetiae_contig171.4744.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig171.4744.1
Unique NamemRNA_L-elsbetiae_contig171.4744.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig171.4744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig171contigL-elsbetiae_contig171:8653..10886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size465
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig171.4744.1prot_L-elsbetiae_contig171.4744.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig171 8653..10884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.3220968-CDS-L-elsbetiae_contig171:8652..87091622815712.3220968-CDS-L-elsbetiae_contig171:8652..8709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 8653..8709 +
1691683053.5861104-CDS-L-elsbetiae_contig171:8652..87091691683053.5861104-CDS-L-elsbetiae_contig171:8652..8709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 8653..8709 +
1622815712.3328102-CDS-L-elsbetiae_contig171:9588..96601622815712.3328102-CDS-L-elsbetiae_contig171:9588..9660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 9589..9660 +
1691683053.5964155-CDS-L-elsbetiae_contig171:9588..96601691683053.5964155-CDS-L-elsbetiae_contig171:9588..9660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 9589..9660 +
1622815712.3428774-CDS-L-elsbetiae_contig171:9907..99731622815712.3428774-CDS-L-elsbetiae_contig171:9907..9973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 9908..9973 +
1691683053.6088755-CDS-L-elsbetiae_contig171:9907..99731691683053.6088755-CDS-L-elsbetiae_contig171:9907..9973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 9908..9973 +
1622815712.352534-CDS-L-elsbetiae_contig171:10158..103981622815712.352534-CDS-L-elsbetiae_contig171:10158..10398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 10159..10398 +
1691683053.6194599-CDS-L-elsbetiae_contig171:10158..103981691683053.6194599-CDS-L-elsbetiae_contig171:10158..10398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 10159..10398 +
1622815712.3618438-CDS-L-elsbetiae_contig171:10857..108841622815712.3618438-CDS-L-elsbetiae_contig171:10857..10884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 10858..10884 +
1691683053.6302924-CDS-L-elsbetiae_contig171:10857..108841691683053.6302924-CDS-L-elsbetiae_contig171:10857..10884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 10858..10884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig171.4744.1

>prot_L-elsbetiae_contig171.4744.1 ID=prot_L-elsbetiae_contig171.4744.1|Name=mRNA_L-elsbetiae_contig171.4744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
WHCADAGWCDQQQEEKRLKVSFTGYDVEDALVVLHEDPRLRRAVLDPRCG
RDHPNTQVLRGIFPKMGDHVRVHVLDAAEAPVFLQQEVYLAGVVVSPLAA
HDSSLVSVVGLAGEELFLVPNTRMEHVTAAEFARVVDILKAARNKVLRQL
DIST
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mRNA from alignment at L-elsbetiae_contig171:8653..10886+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig171.4744.1 ID=mRNA_L-elsbetiae_contig171.4744.1|Name=mRNA_L-elsbetiae_contig171.4744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2234bp|location=Sequence derived from alignment at L-elsbetiae_contig171:8653..10886+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCACTGCGCAGATGCGGGCTGGTGCGATCAGCAGCAGGAGGAAAAGAG
GCTCAAGGTTGGTTTGGTGGTGGGCCGCCTAGATGTTTCCAGGCGCATAT
GGATGTACCATGCTGCACGGTCGGTGCACTTCACACATTTTTATGGTTAG
GGCATGGTTGTGGGTACCACCCTCATAAAGGGTCGGATCACACCAACGTC
TGTCGAGGACGAAACCCTCTTTTCCACAATGGCGTCGACGATTAGATACC
GATTTATGGTGGACAACGTCCCGAGTTCGAATGTCACCATCACGATTTAT
TTCTCAGGAAACAAGTCAAAAATAACTTTCCTCTTGGAAAAAAGAAACAA
TATGGGGGATAGAAACCAAGACCCGATAATCGAACTCGTAACTTCTATGT
GCTGTAGCGGAAGTGGCGCACCCGCTAAAACACGCACAAAGAAGAGTGTT
GGAAAAAGACGGTGGGACGACTCGCCGCCAGCCGGTCGGGTTCCGGTTAC
CCCTAAAAGAGCCTTCTTCTTGCCTACAATAGCAACCAAGAAAAATACTC
GAAAAAAGGGGGGGGTAATGTGGGTCCCACCCTCATAAAGGGTCGGATCA
CACTAACGTCTGTCGAGGACGAAACCCTCTTTTCCACATGGTAGGGCCAA
GGTTTGAGTCAGGTTCGTCTAACTAGCTAGATATAAGGAGTAGGTACCTG
CTATTTTGGCCTCCATTGGCTTGATTGAGCACATGTTCTCGCTTTAGGTC
CCACGAGTACTGTAGACAATACTCCCTTACTTGGTATAGGAAGTTAGTTT
CTGCCCAGGTCAGCCAACTCCTGAAAAGCGTAATTTTAGCCCGTAAATGT
ATCTACCCCTTTCTCAGACAATCTATAGCTCACCGGCTTGGCCCACTTCT
CGCCTTCTCGCTTCTTCGAAATTCCTCGCGATGCAGGTCTCTTTCACTGG
ATACGATGTGGAAGACGCGCTAGTTGTGCTCCACGAAGACCCTAGACTAC
GTCGTGCGGTGGGTTTTCAGTTGTCGTGCCTTTAGCATGTTTTTGAAAAG
TTGTGTTTTCGTGACTTGTGTGCAACGCAGCGTCTCCGTTGTCGTCGGCG
GCCGGTGGCGTTGACATGCCTTGTTGCAAGTATTCGTATCGGCGAAGCGC
GATATTGCTATAGTCATTGCTCGAGGTGAGCACACCACGATTCAACTGGT
CCCTTACTACCGTTGCTTTTCTGCCTTTTGCTGCTGGTGTGCAATTTCTT
CACAGGTGCTGGATCCACGGTGCGGGCGTGACCACCCCAATACACAAGTT
CTGAGAGGCATATTCCCCAAGGCAAGTCAGCAGGGTAAAAATGCTTTCCT
GTCAGAGAGGAACAGCCTACATACCACTCTGTTTGTGCCCCTATGCATAG
CGTGCGCGCGCCTTGAACTCTTCGTAGCCTTGGTTGTTTGTTTGCACGGA
TTCACGTGTCGCTTGTCGCCTTCGGATGTTTCTATGGCATCAAATTCCCG
TTCCAGATGGGTGACCACGTACGAGTCCATGTCCTCGACGCGGCCGAAGC
GCCGGTCTTTCTCCAGCAAGAGGTGTACCTAGCCGGGGTTGTTGTTAGCC
CATTGGCTGCTCACGACAGTTCCTTGGTGAGTGTGGTCGGTCTCGCTGGC
GAGGAGCTGTTTTTGGTGCCGAATACTCGCATGGAGCATGTGACAGCCGC
AGAATTCGCAAGAGTGGTCGACATCTTGAAGGCTGCGCGGAACAAGGTGA
GAACCTGACGGGGTTCGGTTCGCAACATTTCTTTGGTTTGTACGCGGGGC
TACTATTTGCTTGTCGTGCCAATGGACATACGATCCATCAGAGCATAGGT
TGAGACAATTTGCGATGTAGCCGAGGGGAGCTGAGCAGATTCAGTTGCGA
TTTCGTTCGCTAGCTCAACACATGGATTGTGATAGCACCATCTGCAGGAG
TTTGGTCGGTTCGTTGATCGATGTAGCCCCCGTTGCCGGCGTCCATTTGT
CTCCTGCAACTACTGGCCTTGGATGTTGAGCGTTCTTCGTGCTGATTGAT
CTCCGTAACGACAACCAAAAACCTGCTGCACCAATAGGACTCGCCAAGCC
ACATCGAAGTGGCTTTCCAGGATAAATAAGCTCAAGTCCAAACCCCTGAT
ACAAGAACTGAAATATCATCCTTGCTTGATGTCGTCTCGTCTTGACAATG
CTAAGGTATTACGCCAGCTAGACATTTCGACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig171:8653..10886+

>mRNA_L-elsbetiae_contig171.4744.1 ID=mRNA_L-elsbetiae_contig171.4744.1|Name=mRNA_L-elsbetiae_contig171.4744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig171:8653..10886+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCACTGCGCAGATGCGGGCTGGTGCGATCAGCAGCAGGAGGAAAAGAG
GCTCAAGTGGCACTGCGCAGATGCGGGCTGGTGCGATCAGCAGCAGGAGG
AAAAGAGGCTCAAGGTCTCTTTCACTGGATACGATGTGGAAGACGCGCTA
GTTGTGCTCCACGAAGACCCTAGACTACGTCGTGCGGTCTCTTTCACTGG
ATACGATGTGGAAGACGCGCTAGTTGTGCTCCACGAAGACCCTAGACTAC
GTCGTGCGGTGCTGGATCCACGGTGCGGGCGTGACCACCCCAATACACAA
GTTCTGAGAGGCATATTCCCCAAGGTGCTGGATCCACGGTGCGGGCGTGA
CCACCCCAATACACAAGTTCTGAGAGGCATATTCCCCAAGATGGGTGACC
ACGTACGAGTCCATGTCCTCGACGCGGCCGAAGCGCCGGTCTTTCTCCAG
CAAGAGGTGTACCTAGCCGGGGTTGTTGTTAGCCCATTGGCTGCTCACGA
CAGTTCCTTGGTGAGTGTGGTCGGTCTCGCTGGCGAGGAGCTGTTTTTGG
TGCCGAATACTCGCATGGAGCATGTGACAGCCGCAGAATTCGCAAGAGTG
GTCGACATCTTGAAGGCTGCGCGGAACAAGATGGGTGACCACGTACGAGT
CCATGTCCTCGACGCGGCCGAAGCGCCGGTCTTTCTCCAGCAAGAGGTGT
ACCTAGCCGGGGTTGTTGTTAGCCCATTGGCTGCTCACGACAGTTCCTTG
GTGAGTGTGGTCGGTCTCGCTGGCGAGGAGCTGTTTTTGGTGCCGAATAC
TCGCATGGAGCATGTGACAGCCGCAGAATTCGCAAGAGTGGTCGACATCT
TGAAGGCTGCGCGGAACAAGGTATTACGCCAGCTAGACATTTCGACGGTA
TTACGCCAGCTAGACATTTCGACG
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