mRNA_L-elsbetiae_contig171.4743.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig171.4743.1
Unique NamemRNA_L-elsbetiae_contig171.4743.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig171.4743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig171contigL-elsbetiae_contig171:7839..8622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size268
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig171.4743.1prot_L-elsbetiae_contig171.4743.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig171 7839..8622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.268865-CDS-L-elsbetiae_contig171:7838..78791622815712.268865-CDS-L-elsbetiae_contig171:7838..7879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 7839..7879 +
1691683053.5608397-CDS-L-elsbetiae_contig171:7838..78791691683053.5608397-CDS-L-elsbetiae_contig171:7838..7879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 7839..7879 +
1622815712.2789226-CDS-L-elsbetiae_contig171:8126..83171622815712.2789226-CDS-L-elsbetiae_contig171:8126..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 8127..8317 +
1691683053.5694516-CDS-L-elsbetiae_contig171:8126..83171691683053.5694516-CDS-L-elsbetiae_contig171:8126..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 8127..8317 +
1622815712.2887964-CDS-L-elsbetiae_contig171:8587..86221622815712.2887964-CDS-L-elsbetiae_contig171:8587..8622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 8588..8622 +
1691683053.5777938-CDS-L-elsbetiae_contig171:8587..86221691683053.5777938-CDS-L-elsbetiae_contig171:8587..8622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 8588..8622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig171.4743.1

>prot_L-elsbetiae_contig171.4743.1 ID=prot_L-elsbetiae_contig171.4743.1|Name=mRNA_L-elsbetiae_contig171.4743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MAALDGRELHNAAEYLRGRIQAVPDNSSSVSDRRVRDAHFDLYQRTRRNA
LALWFETVGTQGHPTSERGAVAFTTSTGRESWPTDGENQ
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mRNA from alignment at L-elsbetiae_contig171:7839..8622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig171.4743.1 ID=mRNA_L-elsbetiae_contig171.4743.1|Name=mRNA_L-elsbetiae_contig171.4743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=784bp|location=Sequence derived from alignment at L-elsbetiae_contig171:7839..8622+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGCTCTCGACGGCAGAGAGCTACACAACGCAGCGGAGTGAGCATT
GTTTGCCGCTAATTCAGTTTCCAGGCTCTACGTCAGGCGCACGCGGCGTT
GAGGCAGTTTTTTTTCATTGGTGCATCTTGTAGATGATTCACTCAACTAT
TATCCTATGCACTCGTCTCAAAACACTGATCAGCAGGGGTGCTACCTACA
TGATGTGTGTAGTGGTTAACCCCGCTGCTGCTTTCGATGTTCGCATATGC
CCGCCACTGCAACGTGCCCGCTGATTGTTTCATCCCAGATACTTGCGGGG
GAGAATACAAGCAGTGCCTGACAACAGCAGTAGTGTCTCGGATCGACGTG
TTCGAGATGCGCATTTCGACTTGTATCAACGAACAAGGCGGAACGCGCTA
GCTCTTTGGTTCGAGACCGTCGGCACCCAAGGCCACCCGACGAGCGAACG
CGGTGCTGTTGCCTTTACTACATCGACAGGCAAGCCATGCGAGAGGTTAA
ATATACAACGACTTCGACCCCCATGCTAGAGCTAGACGATGCAGCTGCCC
ACGGCACTTATACGATACGAGCGCTGGTGTGGGGGGAGATACGCACATAT
TTACCCACAAACGAAGCACAGCACACAGTGACAGTAGTAGTCCATTTCAC
CAATGTAGCGTACTGGTGTCGAGCAGAGGGCTCCCTCTGGTGATTCTTGC
GAATGAAGTATGTTTTGTTTCGCCGCTAAATACATACCATACAATACAGG
AAGGGAAAGCTGGCCTACAGACGGCGAAAATCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig171:7839..8622+

>mRNA_L-elsbetiae_contig171.4743.1 ID=mRNA_L-elsbetiae_contig171.4743.1|Name=mRNA_L-elsbetiae_contig171.4743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig171:7839..8622+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGCTCTCGACGGCAGAGAGCTACACAACGCAGCGGAATGGCTGCT
CTCGACGGCAGAGAGCTACACAACGCAGCGGAATACTTGCGGGGGAGAAT
ACAAGCAGTGCCTGACAACAGCAGTAGTGTCTCGGATCGACGTGTTCGAG
ATGCGCATTTCGACTTGTATCAACGAACAAGGCGGAACGCGCTAGCTCTT
TGGTTCGAGACCGTCGGCACCCAAGGCCACCCGACGAGCGAACGCGGTGC
TGTTGCCTTTACTACATCGACAGATACTTGCGGGGGAGAATACAAGCAGT
GCCTGACAACAGCAGTAGTGTCTCGGATCGACGTGTTCGAGATGCGCATT
TCGACTTGTATCAACGAACAAGGCGGAACGCGCTAGCTCTTTGGTTCGAG
ACCGTCGGCACCCAAGGCCACCCGACGAGCGAACGCGGTGCTGTTGCCTT
TACTACATCGACAGGAAGGGAAAGCTGGCCTACAGACGGCGAAAATCAGG
AAGGGAAAGCTGGCCTACAGACGGCGAAAATCAG
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