mRNA_L-elsbetiae_contig17097.4740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17097.4740.1
Unique NamemRNA_L-elsbetiae_contig17097.4740.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 7.660e-54
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:   28 STGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGGMYLNGASHD 360
            + G FLD +LERLGLN+RERCDMVT WLPQLESS FN IYFV V+RYE+AARLTIVP PDVTIRVFMAF G  AY+ ELDTAKIEEL++PAREGFVAVEWGGM LNG SHD
Sbjct:  343 AAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSHD 453
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 6.100e-51
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:   76 MRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGGMYLNGASHD 360
            MRERCDMVTYWLPQLESS FN IYFVNV+RYEKAARLTI PAPDVTIR+FMAF G+DAY+ ELDTAK+E+L+AP R+GFVAVEWGGM LN  SHD
Sbjct:    1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLNRVSHD 95
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: A0A174QBY5_FLAPL (Uncharacterized protein n=1 Tax=Flavonifractor plautii TaxID=292800 RepID=A0A174QBY5_FLAPL)

HSP 1 Score: 97.4 bits (241), Expect = 1.250e-22
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:   31 TGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGG 333
            T AFL+ +L+RLGL  RE  + + YWLP+LE +P+N + F   + Y  +A LTI PAPD  IRVF+A+ G+DA  VE++  K   L AP R GF AVEWGG
Sbjct:   44 TAAFLEDALDRLGLTEREADEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGLDA-PVEVEPQK---LTAPERAGFTAVEWGG 139
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: A0A096CD36_FLAPL (Uncharacterized protein n=14 Tax=Eubacteriales TaxID=186802 RepID=A0A096CD36_FLAPL)

HSP 1 Score: 98.2 bits (243), Expect = 3.350e-22
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   31 TGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGG 333
            T AFL+ +L+RLGL  RE  + + YWLP+LE +P+N + F   + Y  +A LTI PAPD  IRVF+A+ G+DA  VE++    + L APAR GF AVEWGG
Sbjct:  111 TAAFLEDALDRLGLTGREADEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGLDA-PVEIEP---QTLTAPARTGFTAVEWGG 206
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: A0A1Y4WJV0_9FIRM (Uncharacterized protein n=1 Tax=Flavonifractor sp. An10 TaxID=1965537 RepID=A0A1Y4WJV0_9FIRM)

HSP 1 Score: 96.3 bits (238), Expect = 1.610e-21
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:   31 TGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGGMYLN 345
            T AFL+ +L RLGL  RE  + + YWLP++E +P+N I F     Y  AA LTI P+PD  IRVFM + G++   VE+     +EL APAR GF AVEWGG  L 
Sbjct:  105 TAAFLEDALARLGLTEREANEFIIYWLPRMEGNPYNLISF-QTDAYTDAAELTIDPSPDTLIRVFMTWKGLEQ-PVEIPA---QELTAPARTGFTAVEWGGAELG 204
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: A0A096B0K5_FLAPL (Uncharacterized protein n=19 Tax=Eubacteriales TaxID=186802 RepID=A0A096B0K5_FLAPL)

HSP 1 Score: 96.3 bits (238), Expect = 1.800e-21
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:   31 TGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGGMYLN 345
            T AFL+ +L+RLGL  RE  + + YWLP+LE +P+N + F     Y  +A LTI PAPD  IRVF+A+ G+DA  VE++    + L AP R GF AVEWGG  ++
Sbjct:  111 TAAFLEDALDRLGLTEREADEFIIYWLPKLEGNPYNLLSF-QTDAYTDSAALTIDPAPDTLIRVFLAWKGLDA-PVEVEP---QTLTAPERTGFTAVEWGGAEVD 210
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: A0A1Q6RH43_9FIRM (Uncharacterized protein n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1Q6RH43_9FIRM)

HSP 1 Score: 95.1 bits (235), Expect = 4.470e-21
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:   31 TGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGG 333
            T AFL+ +L +LGL  RE  + + YWLPQ++ +P+N I F +  RY +AA+LTI PAPD  +RVFMA+  +D + +E+     + L AP R GF AVEWGG
Sbjct:  106 TAAFLEDALAQLGLTRREANEFIVYWLPQMQENPYNLIAFQS-DRYTQAAKLTIDPAPDTLLRVFMAWKPLDKF-MEIPA---QSLTAPERTGFTAVEWGG 201
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: A0A1Y4S5T9_9FIRM (Uncharacterized protein n=2 Tax=unclassified Flavonifractor TaxID=2629267 RepID=A0A1Y4S5T9_9FIRM)

HSP 1 Score: 93.6 bits (231), Expect = 2.000e-20
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:   22 RNSTGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGG 333
            R  T AFL+ +L  LGL  RE  + + YWLP+LE +P+N I F     Y   A LTI PAPD  IRVFMA+ G++   VE+     + L APAR GF AVEWGG
Sbjct:  109 REDTAAFLEEALAELGLTEREANEFIIYWLPRLEENPYNLISF-QTSAYTDGAELTIDPAPDTLIRVFMAWRGLEE-PVEVVP---QTLTAPARTGFTAVEWGG 207
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: R5AD22_9CLOT (Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 TaxID=1262769 RepID=R5AD22_9CLOT)

HSP 1 Score: 92.4 bits (228), Expect = 6.430e-20
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:   31 TGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGGMYLN 345
            T +FL+ +L RLGL  +E  + + YWLPQ+E +P+N I F +   Y +AA+L++ PAPD  +RVFMA+  ++    E     ++EL AP R GF AVEWGG  + 
Sbjct:  119 TASFLEDALSRLGLTRKEANEFIVYWLPQMEENPYNLIAFQS-DAYTEAAKLSMEPAPDTLLRVFMAWKPLE----EPLEIPVQELTAPERRGFTAVEWGGCQVK 218
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BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Match: UPI00102F4506 (hypothetical protein n=1 Tax=Intestinimonas massiliensis TaxID=1673721 RepID=UPI00102F4506)

HSP 1 Score: 91.3 bits (225), Expect = 1.440e-19
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:   31 TGAFLDASLERLGLNMRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVFMAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGG 333
            T AFL+ +L  LGL  +E  + + YWLP++E +P+N I F     Y  +A+LTI PAPD  IRVFMA+ GV+   VE+     + L AP R GF AVEWGG
Sbjct:  108 TAAFLEGALADLGLTEKEANEFIIYWLPRMEHNPYNLISF-QTTAYTDSAKLTIDPAPDTLIRVFMAWQGVEE-QVEVPP---QTLTAPQRSGFTAVEWGG 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17097.4740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI7.660e-5480.18Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FJP3_ECTSI6.100e-5182.11Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
A0A174QBY5_FLAPL1.250e-2251.49Uncharacterized protein n=1 Tax=Flavonifractor pla... [more]
A0A096CD36_FLAPL3.350e-2251.49Uncharacterized protein n=14 Tax=Eubacteriales Tax... [more]
A0A1Y4WJV0_9FIRM1.610e-2149.52Uncharacterized protein n=1 Tax=Flavonifractor sp.... [more]
A0A096B0K5_FLAPL1.800e-2148.57Uncharacterized protein n=19 Tax=Eubacteriales Tax... [more]
A0A1Q6RH43_9FIRM4.470e-2148.51Uncharacterized protein n=3 Tax=Oscillospiraceae T... [more]
A0A1Y4S5T9_9FIRM2.000e-2050.00Uncharacterized protein n=2 Tax=unclassified Flavo... [more]
R5AD22_9CLOT6.430e-2043.81Uncharacterized protein n=1 Tax=Clostridium sp. CA... [more]
UPI00102F45061.440e-1948.51hypothetical protein n=1 Tax=Intestinimonas massil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17097contigL-elsbetiae_contig17097:269..1203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.3e-38
Seed eggNOG ortholog2880.D7G4B4
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Exons2
Model size543
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17097.4740.1prot_L-elsbetiae_contig17097.4740.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17097 344..1023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.1902072-UTR-L-elsbetiae_contig17097:268..3431622815712.1902072-UTR-L-elsbetiae_contig17097:268..343Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17097 269..343 +
1691683053.526675-UTR-L-elsbetiae_contig17097:268..3431691683053.526675-UTR-L-elsbetiae_contig17097:268..343Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17097 269..343 +
1622815712.2315705-UTR-L-elsbetiae_contig17097:1023..12031622815712.2315705-UTR-L-elsbetiae_contig17097:1023..1203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17097 1024..1203 +
1691683053.5528061-UTR-L-elsbetiae_contig17097:1023..12031691683053.5528061-UTR-L-elsbetiae_contig17097:1023..1203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17097 1024..1203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.2049658-CDS-L-elsbetiae_contig17097:343..5041622815712.2049658-CDS-L-elsbetiae_contig17097:343..504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17097 344..504 +
1691683053.5369594-CDS-L-elsbetiae_contig17097:343..5041691683053.5369594-CDS-L-elsbetiae_contig17097:343..504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17097 344..504 +
1622815712.219705-CDS-L-elsbetiae_contig17097:896..10231622815712.219705-CDS-L-elsbetiae_contig17097:896..1023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17097 897..1023 +
1691683053.5450537-CDS-L-elsbetiae_contig17097:896..10231691683053.5450537-CDS-L-elsbetiae_contig17097:896..1023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17097 897..1023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17097.4740.1

>prot_L-elsbetiae_contig17097.4740.1 ID=prot_L-elsbetiae_contig17097.4740.1|Name=mRNA_L-elsbetiae_contig17097.4740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MRERCDMVTYWLPQLESSPFNAIYFVNVKRYEKAARLTIVPAPDVTIRVF
MAFSGVDAYNVELDTAKIEELQAPAREGFVAVEWGGMYLNGASHD*
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mRNA from alignment at L-elsbetiae_contig17097:269..1203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17097.4740.1 ID=mRNA_L-elsbetiae_contig17097.4740.1|Name=mRNA_L-elsbetiae_contig17097.4740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=935bp|location=Sequence derived from alignment at L-elsbetiae_contig17097:269..1203+ (Laminarionema elsbetiae ELsaHSoW15)
GACTCATGTCTTATTGCCCTACGTAACTCTACAGGCGCGTTCCTCGACGC
TTCCCTGGAGCGCCTCGGGCTCAACATGCGGGAGCGCTGCGACATGGTCA
CGTACTGGCTGCCGCAGCTGGAATCTTCGCCCTTCAACGCCATCTACTTC
GTGAACGTAAAGCGGTACGAGAAGGCGGCCCGTCTGACCATTGTGCCTGC
TCCGGACGTCACGATCCGGGTGTTCATGGCATTCAGGTGGGTCGTGAGTA
CTTGCTCGTGTGTAAGAGTTTACCTATTGATTTCGTTGTTGAATCCTGTT
GTGCTCGAAGGTGAGGATCCGTCTTTTTGCCGTTTGGTGACTCAACGTTG
CTTGCATGAGGTATCAATAATGCAGACGCCGCCCCTGAAATGGTACCATA
TTCACAACATCAGCCCCCCCGACTTGACCACGGCGCGTGGTGGAAACGGT
GTTCTGGTGTATACCGTAACGCCCTAAACATTGAACTTCCCTTCCGCTCC
AATACGATCATACCATTATACATAATACCGTCGACTGATTCCCAAGGGCT
ATCGCATCATATCATTTCTCGTTACCGTTCGGCGTATGCAAACTTTGTCG
GCACACGGTATCGTGTTTGTACTTGCAGCGGCGTCGATGCTTACAATGTG
GAGCTGGACACCGCCAAGATAGAAGAGCTACAAGCGCCTGCCAGGGAGGG
ATTCGTGGCTGTCGAGTGGGGAGGCATGTACCTCAACGGGGCCTCGCACG
ACTAGCTCGCCAAACGACCTGACTTTATTCTATGCGAGGACTGCTGTCGA
CAGGTTCACTGCTTATCAGGAGACAAACTGACCGCGGGCAAGCGGGAACC
TATCGTGTGTGCCATGCTCGCGTGTGGTACCAGAGCGTCTAGCCGAAGCC
TGCGTCTGGTCGACTGGTCTGATCCATGTTTTTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17097:269..1203+

>mRNA_L-elsbetiae_contig17097.4740.1 ID=mRNA_L-elsbetiae_contig17097.4740.1|Name=mRNA_L-elsbetiae_contig17097.4740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig17097:269..1203+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGAGCGCTGCGACATGGTCACGTACTGGCTGCCGCAGCTGGAATC
TTCGCCCTTCAACGCCATCTACTTCGTGAACGTAAAGCGGTACGAGAAGG
CGGCCCGTCTGACCATTGTGCCTGCTCCGGACGTCACGATCCGGGTGTTC
ATGGCATTCAGATGCGGGAGCGCTGCGACATGGTCACGTACTGGCTGCCG
CAGCTGGAATCTTCGCCCTTCAACGCCATCTACTTCGTGAACGTAAAGCG
GTACGAGAAGGCGGCCCGTCTGACCATTGTGCCTGCTCCGGACGTCACGA
TCCGGGTGTTCATGGCATTCAGCGGCGTCGATGCTTACAATGTGGAGCTG
GACACCGCCAAGATAGAAGAGCTACAAGCGCCTGCCAGGGAGGGATTCGT
GGCTGTCGAGTGGGGAGGCATGTACCTCAACGGGGCCTCGCACGACTAGC
GGCGTCGATGCTTACAATGTGGAGCTGGACACCGCCAAGATAGAAGAGCT
ACAAGCGCCTGCCAGGGAGGGATTCGTGGCTGTCGAGTGGGGAGGCATGT
ACCTCAACGGGGCCTCGCACGACTAG
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