mRNA_L-elsbetiae_contig17092.4737.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17092.4737.1
Unique NamemRNA_L-elsbetiae_contig17092.4737.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17092.4737.1 vs. uniprot
Match: A0A6H5J5H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5H1_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 5.290e-131
Identity = 199/262 (75.95%), Postives = 229/262 (87.40%), Query Frame = 2 
Query:    2 QFDDSEEGSGKKTFASTARDAGESLFEPRPAPRTQDSRSSSSPDDKWQEQWFAHEDKRMDKLGLE-PEGETGGGDMPELDDCEEDDHFDPEDEWDDEVWARYAPEQLEQFKILGARLEKEESEQMTKLRRTWSQTKADAEREHGTAEHIELPDIIIRHEMSYEAPPGKANSDRPMPLPRPLDTIVDSMQLPPGLDVTPDDPEYEQVVNMWTSISRNNTMDEKMKKKVIGQISTFIAKHRDSDAFQKALETQDFPQVRGRRPR 784
            QF+DS+EGSG K FA TARD  E LFE +      DSRSS S DDKWQEQWF+HEDKR+DKLGLE PEGE GG D+PELDDCEEDDHFD +DEWDDE W  Y PEQ+E+FKILGARLE+EES+QM  LRR W +TKAD+ ++HGTAEH+ELPDI+I+HE++YEAPPGKAN+DR MP PRP++TIVDSMQLPPGLDVTPDDPEYE+VV MW ++SRNNTMDE+MKK +IGQISTFIAKHR+SDAFQKALETQDFP+VRGRRPR
Sbjct:  123 QFEDSDEGSGTKKFAGTARDE-ELLFEEKEP--EDDSRSSKSQDDKWQEQWFSHEDKRLDKLGLEQPEGEMGG-DLPELDDCEEDDHFDADDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDIVIKHEITYEAPPGKANADRSMPTPRPVETIVDSMQLPPGLDVTPDDPEYEEVVKMWMTLSRNNTMDERMKKSIIGQISTFIAKHRNSDAFQKALETQDFPEVRGRRPR 380
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BLAST of mRNA_L-elsbetiae_contig17092.4737.1 vs. uniprot
Match: D8LRT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT9_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.070e-78
Identity = 130/183 (71.04%), Postives = 152/183 (83.06%), Query Frame = 2 
Query:    2 QFDDSEEGSGKKTFASTARDAGESLFEPRPAPRTQDSRSSSSPDDKWQEQWFAHEDKRMDKLGLEPEGETGGGDMPELDDCEEDDHFDPEDEWDDEVWARYAPEQLEQFKILGARLEKEESEQMTKLRRTWSQTKADAEREHGTAEHIELPDIIIRHEMSYEAPPGKANSDRPMPLPRPLDTI 550
            QFDDS+EGSG K FA TARD G    E  P     D RSS S DDKWQEQWF+HEDKR+DKLGLEPEGE GG D+PELDDCEEDDHFDP+DEWDDE W  Y PEQ+E+FKILGARLE+EES+QM  LRR W +TKAD+ ++HGTAEH+ELPDI+I+HE++YEAPPGKAN+DR MP+PRP+ +I
Sbjct:  114 QFDDSDEGSGTKKFAGTARDEGLLFEEKEPE---DDFRSSKSQDDKWQEQWFSHEDKRLDKLGLEPEGEMGG-DLPELDDCEEDDHFDPDDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDIVIKHEITYEAPPGKANADRSMPIPRPVVSI 292
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17092.4737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5H1_9PHAE5.290e-13175.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRT9_ECTSI1.070e-7871.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17092contigL-elsbetiae_contig17092:707..3499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1608
Cds size612
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.9469185-UTR-L-elsbetiae_contig17092:706..8811622815711.9469185-UTR-L-elsbetiae_contig17092:706..881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17092 707..881 +
1691683053.378522-UTR-L-elsbetiae_contig17092:706..8811691683053.378522-UTR-L-elsbetiae_contig17092:706..881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17092 707..881 +
1622815712.0220802-UTR-L-elsbetiae_contig17092:2678..34991622815712.0220802-UTR-L-elsbetiae_contig17092:2678..3499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17092 2679..3499 +
1691683053.4358952-UTR-L-elsbetiae_contig17092:2678..34991691683053.4358952-UTR-L-elsbetiae_contig17092:2678..3499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17092 2679..3499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.9606693-CDS-L-elsbetiae_contig17092:881..9021622815711.9606693-CDS-L-elsbetiae_contig17092:881..902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 882..902 +
1691683053.3925328-CDS-L-elsbetiae_contig17092:881..9021691683053.3925328-CDS-L-elsbetiae_contig17092:881..902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 882..902 +
1622815711.9709544-CDS-L-elsbetiae_contig17092:1162..13271622815711.9709544-CDS-L-elsbetiae_contig17092:1162..1327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 1163..1327 +
1691683053.4026053-CDS-L-elsbetiae_contig17092:1162..13271691683053.4026053-CDS-L-elsbetiae_contig17092:1162..1327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 1163..1327 +
1622815711.9828067-CDS-L-elsbetiae_contig17092:1767..19471622815711.9828067-CDS-L-elsbetiae_contig17092:1767..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 1768..1947 +
1691683053.410787-CDS-L-elsbetiae_contig17092:1767..19471691683053.410787-CDS-L-elsbetiae_contig17092:1767..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 1768..1947 +
1622815711.9959428-CDS-L-elsbetiae_contig17092:2076..21961622815711.9959428-CDS-L-elsbetiae_contig17092:2076..2196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 2077..2196 +
1691683053.418765-CDS-L-elsbetiae_contig17092:2076..21961691683053.418765-CDS-L-elsbetiae_contig17092:2076..2196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 2077..2196 +
1622815712.009282-CDS-L-elsbetiae_contig17092:2552..26781622815712.009282-CDS-L-elsbetiae_contig17092:2552..2678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 2553..2678 +
1691683053.4271593-CDS-L-elsbetiae_contig17092:2552..26781691683053.4271593-CDS-L-elsbetiae_contig17092:2552..2678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17092 2553..2678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17092.4737.1prot_L-elsbetiae_contig17092.4737.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17092 882..2678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17092.4737.1

>prot_L-elsbetiae_contig17092.4737.1 ID=prot_L-elsbetiae_contig17092.4737.1|Name=mRNA_L-elsbetiae_contig17092.4737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
MDKLGLEPEGETGGGDMPELDDCEEDDHFDPEDEWDDEVWARYAPEQLEQ
FKILGARLEKEESEQMTKLRRTWSQTKADAEREHGTAEHIELPDIIIRHE
MSYEAPPGKANSDRPMPLPRPLDTIVDSMQLPPGLDVTPDDPEYEQVVNM
WTSISRNNTMDEKMKKKVIGQISTFIAKHRDSDAFQKALETQDFPQVRGR
RPR*
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mRNA from alignment at L-elsbetiae_contig17092:707..3499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17092.4737.1 ID=mRNA_L-elsbetiae_contig17092.4737.1|Name=mRNA_L-elsbetiae_contig17092.4737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2793bp|location=Sequence derived from alignment at L-elsbetiae_contig17092:707..3499+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGTTTGACGACTCTGAAGAAGGGTCCGGTAAAAAGACGTTTGCGAGCA
CAGCACGGGACGCCGGGGAATCGCTATTCGAACCCAGGCCAGCACCGAGG
ACTCAAGACTCCAGGTCGTCCTCCTCACCCGACGATAAGTGGCAGGAGCA
ATGGTTTGCCCACGAAGACAAGAGGATGGACAAGCTGGGCTTGGAGGTGA
GGTGACGTTCGTAGGTACGCATTGCACCTCGCGCCGCCGTACGGGTTACT
ATTTACTGCTTTAGTGGGTTCGCACCGACGGCGGAGGTGAAACATTCTCG
CGTGAAATGATTCTTGGGTGTTATTATCGGTGCCTAGATCCCGCCGCCAA
GATTGATGGATTGTTTGAGTACAAAGAGGCGTTCACGGCTTGCTTTGCAT
CGCTCTCTATGTTGTCCTGCTTGTTTTTTGGGGTCTTCCGAATGCTACCA
TGATAGCCGGAAGGAGAAACGGGGGGAGGAGACATGCCGGAGCTGGATGA
CTGCGAGGAAGACGACCACTTCGATCCCGAAGACGAATGGGACGATGAGG
TTTGGGCGAGGTACGCCCCGGAGCAGCTCGAGCAGTTTAAAATACTGGGT
GCCAGGCTCGAAAAAGAGGAGGTGAGTTGGCGTGAGATTGCTTGCTTGCA
GCGTGTTTACGTTCGCACAAGCTGCGCACCGAAACTCCTCGAGACTCTTG
ATATTTCTCGCCACGGTTTGCACCAGTTTTCTCGTGGAGCGTCATGCACT
CGCGTCTCGCTTCCGCAAATTGTGCCCGTGGTAGGGCAGGTCGTGACGAT
GAGTTTGTGCCAACGACGCCGGTGCCGCCTTGTAGGCGCCATGCGAACGA
GTGATCCCGAAAGGTAGAGGGAGATGGGCGATGTGAAGCTTAGCTGTGAC
CGCCGCCATTCCCTGCTGTGCCTTAACGCCTCACATTGCAAGCGGCGTAA
TGCTTGTACTTTCTTGGCGCGAAGCAGAAACAACGTGGTGGGCACAACTG
AAAAATGACAACTTGGCTGATCCAAACGGCACAAACCCGCACGTGTAAAT
GGTATCTACAGAGCGAGCAAATGACAAAGCTGCGCAGGACGTGGTCGCAG
ACCAAGGCAGACGCAGAGAGAGAGCACGGAACGGCCGAACATATCGAGTT
GCCGGACATCATCATTCGCCACGAGATGAGCTATGAGGCACCTCCGGGGA
AGGCCAATTCAGACCGCCCCATGCCACTACCACGCCCCTTGGTGAGGCTT
CTCTTGTAAACCGCTTGTTCTTGTTTTCGTATCTTTCGGTCGCAGGTATA
TCAGGGCACCCATTCGTCATTTATACGATGCGAAAATCTAAAAACGCCCA
TCCTCTCTGTCATTTCCCAGGATACTATTGTCGACAGCATGCAGCTTCCT
CCTGGCCTCGACGTGACGCCAGACGACCCAGAGTACGAACAGGTGGTCAA
CATGTGGACCTCTATATCCCGCAACAACACCATGGATGAGGTGCGCCACT
GCTCGTTGGTCTGCATATGGACCGACTACATTCGATTGGATTTCTGCTAG
ATAATTTTCTGTAAAAAATGCCGCTGAGGGATATCCCACACGTTTGTTGA
AAGTCACTTTGGCAGAAACGCAGGTGGCCAAACATATCGCGCCACGGACA
TTAGTTGTTTGGATGCAACTGCCCGTCAAAGCTTCTTTTGCCCGTGCGCA
TTTACCCCCCTGAAGTCTGAGGTTCGTCCACAACAGATATTCAGATTTGT
TTAGACATTTCAAGTAAATTCGACCTCCTGCGTGTTCCGGTTTCACGCCG
CTGTCTGTCTTTCTCTTTCCGGATTTCGCCACCCATGTCTTTGCAGAAAA
TGAAGAAAAAGGTTATTGGGCAAATCTCCACCTTCATCGCCAAGCACCGA
GATTCGGATGCTTTCCAGAAGGCGTTGGAGACTCAAGATTTCCCGCAAGT
GCGGGGAAGGCGACCACGTTGAGCGCGGTTTGATGTTTGCCTCTCGGTAT
TGGGCGAAGTAACAATTGCGCTGTGGCAGCGAAGCGTGAGCGAGGCATAT
ATAGCCACTGGAATTGTTCCACCGCCAGCGTTTTGGAGGCATGGCGTGTA
CTGCTAATCTGCCGGTTTTGCCTACGCCGTGCGGTGCGCGGTTTGTACCA
ATCGACCGAACCAGAGAAAAGCCCAAGCGTCCAAAGATTTGCCATTCTGA
GTACCATGTAGAGGTATGACGTTTCTTAGGCCTTACGTCCAAATCCCGCT
GAGTTTTTGGAGTGCTTTTTTTCAAAAGTTCGGTCACGTTTTCAGGCCAA
ACGCGTGATCCTATTTTCTCGCAACCGACGGACGTCTAATCGCGCCGGTG
AATGCATGTGGGCCTCAAGGTTATGCCCCCCCAATTTGCCCTCTCGCCTC
GAGCTCCAGTGTTATTTGAACTAAATTTCAAGGGGGCGCATGTGCGGGAG
ATTTTTAAGAAGGCGCCTTCCGTCAAGGCCAAAAGGCACAGGGCCTCAGT
ATACCCCACGCACCCAAGAAGCCGATATCTCAGTCTCCGGTTGCAGGAAG
TGATCCAAAACGAACCTTTGAGGCTGTGCAGTAGAGATGTGTGACTACAG
AGCGGGCCAAACATCTAGGTGGTAGCTCTTGCACTGCATTTAGAGGTGCC
ATCGCAAAAAAATGATAGGGAAAAGAGGGAGAGTCGAAAAAAGAGAGCCA
GCTGCGAGACAGACGAGCACGATTCCTATACAAAACGCAGCTTTTTGGTC
CCTGAAGAGATCCATCGCAAGACCGCGCACGTTGGCAAGAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17092:707..3499+

>mRNA_L-elsbetiae_contig17092.4737.1 ID=mRNA_L-elsbetiae_contig17092.4737.1|Name=mRNA_L-elsbetiae_contig17092.4737.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig17092:707..3499+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAAGCTGGGCTTGGAGATGGACAAGCTGGGCTTGGAGCCGGAAGG
AGAAACGGGGGGAGGAGACATGCCGGAGCTGGATGACTGCGAGGAAGACG
ACCACTTCGATCCCGAAGACGAATGGGACGATGAGGTTTGGGCGAGGTAC
GCCCCGGAGCAGCTCGAGCAGTTTAAAATACTGGGTGCCAGGCTCGAAAA
AGAGGAGCCGGAAGGAGAAACGGGGGGAGGAGACATGCCGGAGCTGGATG
ACTGCGAGGAAGACGACCACTTCGATCCCGAAGACGAATGGGACGATGAG
GTTTGGGCGAGGTACGCCCCGGAGCAGCTCGAGCAGTTTAAAATACTGGG
TGCCAGGCTCGAAAAAGAGGAGAGCGAGCAAATGACAAAGCTGCGCAGGA
CGTGGTCGCAGACCAAGGCAGACGCAGAGAGAGAGCACGGAACGGCCGAA
CATATCGAGTTGCCGGACATCATCATTCGCCACGAGATGAGCTATGAGGC
ACCTCCGGGGAAGGCCAATTCAGACCGCCCCATGCCACTACCACGCCCCT
TGAGCGAGCAAATGACAAAGCTGCGCAGGACGTGGTCGCAGACCAAGGCA
GACGCAGAGAGAGAGCACGGAACGGCCGAACATATCGAGTTGCCGGACAT
CATCATTCGCCACGAGATGAGCTATGAGGCACCTCCGGGGAAGGCCAATT
CAGACCGCCCCATGCCACTACCACGCCCCTTGGATACTATTGTCGACAGC
ATGCAGCTTCCTCCTGGCCTCGACGTGACGCCAGACGACCCAGAGTACGA
ACAGGTGGTCAACATGTGGACCTCTATATCCCGCAACAACACCATGGATG
AGGATACTATTGTCGACAGCATGCAGCTTCCTCCTGGCCTCGACGTGACG
CCAGACGACCCAGAGTACGAACAGGTGGTCAACATGTGGACCTCTATATC
CCGCAACAACACCATGGATGAGAAAATGAAGAAAAAGGTTATTGGGCAAA
TCTCCACCTTCATCGCCAAGCACCGAGATTCGGATGCTTTCCAGAAGGCG
TTGGAGACTCAAGATTTCCCGCAAGTGCGGGGAAGGCGACCACGTTGAAA
AATGAAGAAAAAGGTTATTGGGCAAATCTCCACCTTCATCGCCAAGCACC
GAGATTCGGATGCTTTCCAGAAGGCGTTGGAGACTCAAGATTTCCCGCAA
GTGCGGGGAAGGCGACCACGTTGA
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