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Homology
BLAST of mRNA_L-elsbetiae_contig1709.4735.1 vs. uniprot
Match: D8LMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ5_ECTSI) HSP 1 Score: 247 bits (631), Expect = 1.070e-73 Identity = 140/227 (61.67%), Postives = 161/227 (70.93%), Query Frame = 3
Query: 3 PTDPITPLVSGLVRGIRFDGPVRRYRLASKILCRLASVLGWTAVVIGAGEIAIGVVLFSKWRREGGWWAGLLGALLGMVATGITADTPVGTPLVGWLVVLGLVSLLTSLVTLLALDGATWLDAKGVEVCVKSFDLVCQXXXXXXSTSDDAWDKCFSPGNGDCGGIESAPPVLLASSFALLVLSIVSALLLAAGIKIKYLGGGVAEGGETEKTRSSHPAMMPSKNPFP 683
P++P TP S LV+G R GPV RYR+ASK LCR+ASV GW AVVIGAGE A+G V+FSKWRREGGWWAG+L +LGM TGITADTPVGTPLV LV LG+ SL+TSLVT LALDGA WL K VE+C VCQ S+S+ WD CF P NG CGGIE A LLASS LL L++VSA+LLA GIK+K+LGGGV GGE + +PA P K P
Sbjct: 36 PSEPATPKASVLVQG-RAGGPVDRYRVASKRLCRVASVFGWAAVVIGAGETALGAVVFSKWRREGGWWAGVLAVMLGMAGTGITADTPVGTPLVTRLVFLGVASLITSLVTALALDGAKWLSIKDVEMCASDVRSVCQECTC--SSSNLLWDMCFPPLNGSCGGIEFAAAPLLASSVVLLALALVSAVLLATGIKVKFLGGGVEVGGEEARP---NPAKTPGKRRAP 256
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-16_001190.1 |
Exons | 5 |
Model size | 1612 |
Cds size | 825 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815711.7414334-UTR-L-elsbetiae_contig1709:14804..15358 | 1622815711.7414334-UTR-L-elsbetiae_contig1709:14804..15358 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 14805..15358 - |
1691683053.251438-UTR-L-elsbetiae_contig1709:14804..15358 | 1691683053.251438-UTR-L-elsbetiae_contig1709:14804..15358 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 14805..15358 - |
1622815711.7938743-UTR-L-elsbetiae_contig1709:17115..17163 | 1622815711.7938743-UTR-L-elsbetiae_contig1709:17115..17163 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 17116..17163 - |
1691683053.2978685-UTR-L-elsbetiae_contig1709:17115..17163 | 1691683053.2978685-UTR-L-elsbetiae_contig1709:17115..17163 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 17116..17163 - |
1622815711.804291-UTR-L-elsbetiae_contig1709:18095..18223 | 1622815711.804291-UTR-L-elsbetiae_contig1709:18095..18223 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 18096..18223 - |
1691683053.3072257-UTR-L-elsbetiae_contig1709:18095..18223 | 1691683053.3072257-UTR-L-elsbetiae_contig1709:18095..18223 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 18096..18223 - |
1622815711.8165162-UTR-L-elsbetiae_contig1709:20095..20152 | 1622815711.8165162-UTR-L-elsbetiae_contig1709:20095..20152 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 20096..20152 - |
1691683053.3170192-UTR-L-elsbetiae_contig1709:20095..20152 | 1691683053.3170192-UTR-L-elsbetiae_contig1709:20095..20152 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1709 20096..20152 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815711.7547195-CDS-L-elsbetiae_contig1709:15358..15962 | 1622815711.7547195-CDS-L-elsbetiae_contig1709:15358..15962 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1709 15359..15962 - |
1691683053.2703083-CDS-L-elsbetiae_contig1709:15358..15962 | 1691683053.2703083-CDS-L-elsbetiae_contig1709:15358..15962 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1709 15359..15962 - |
1622815711.766867-CDS-L-elsbetiae_contig1709:16245..16325 | 1622815711.766867-CDS-L-elsbetiae_contig1709:16245..16325 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1709 16246..16325 - |
1691683053.2792459-CDS-L-elsbetiae_contig1709:16245..16325 | 1691683053.2792459-CDS-L-elsbetiae_contig1709:16245..16325 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1709 16246..16325 - |
1622815711.779125-CDS-L-elsbetiae_contig1709:16974..17115 | 1622815711.779125-CDS-L-elsbetiae_contig1709:16974..17115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1709 16975..17115 - |
1691683053.2884312-CDS-L-elsbetiae_contig1709:16974..17115 | 1691683053.2884312-CDS-L-elsbetiae_contig1709:16974..17115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1709 16975..17115 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1709.4735.1 >prot_L-elsbetiae_contig1709.4735.1 ID=prot_L-elsbetiae_contig1709.4735.1|Name=mRNA_L-elsbetiae_contig1709.4735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=275bp
MVATGITADTPVGTPLVGWLVVLGLVSLLTSLVTLLALDGATWLDAKGVE VCVKSFDLVCQSFDCACSTSDDAWDKCFSPGNGDCGGIESAPPVLLASSF ALLVLSIVSALLLAAGIKIKYLGGGVAEGGETEKTRSSHPAMMPSKNPFP ETPEPGNERHRHQHRRSRDEGKYHNRGQQPPRGLEEAKKTAVGAEYEEEQ KKENDEDGVAVVTGAAVPKEAEEAPAGAEPWAVGYVDRLAGGGNKKRRDE LNNPGRGGGGGGGGRGSVGAAVSQ* back to topmRNA from alignment at L-elsbetiae_contig1709:14805..20152- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1709.4735.1 ID=mRNA_L-elsbetiae_contig1709.4735.1|Name=mRNA_L-elsbetiae_contig1709.4735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5348bp|location=Sequence derived from alignment at L-elsbetiae_contig1709:14805..20152- (Laminarionema elsbetiae ELsaHSoW15) GGCCTACAGATCCCATCACGCCCTTGGTATCCGGCCTGGTTCGAGGGATC
AGATTCGGTGAGCTGTTATCATCTGGCTTTCCGATCATTCATACATTTGT
GGCGGGAGAGAGAGATGTGAGATGCCACTACATACTGCTGTGGGAAGGAA
CAGAGATATTTGCAGTTGTTGCAGCCAACACTCAGGAGAGCAGGCTCAAG
GGAGGCAACAATTCATTCATTTGCTCCTAGCTCGCGATCTTTTGAGAAAA
AGTGACAAACAGCCAATTTTCACACACGCAGCAGCGTACAGGGTTACCCC
GCTCCCCCGATGACATTGGGGGCGAGGGCTCATACCGGCGAGATGCTAAG
CATAGCTCTCTCTCTCCTCCCCTTCTACCCCTTTCTCCATTCCTCCGTGC
CAGAGGAAGAGACGAGAGATAGAGTCGACTGTGTGTATTATGAGAACCTA
TTTTCTACACATGTGAAAAGAGGGTCGCATCCACACACGCCTGGGCGTGT
GGGGGATAGCCGCTTAGTTAGCGTGTGGTGAGGTTTACAATAGCGTATCT
TACCTCTATAGACTCGCGTCAAACCCGATGGGAGCCGCGTGGGACTTGGT
TTCTCGAAGGAGGCGGCATGTTTCAACCTCCGGGCTTTTTCCCGCACGCA
CACTTATTACTCTCACAGTTGGCTCTTCTTTTTTGGAACCCACGCGACCG
TCGTATCCGCACGCCAATACACTACATACAGTAGCAGAGCAGGTCAATTT
GGTGGTGTAATGACCTGCAGAGTACGACCTAATACCCTGCAGTCTAAGTA
GTCTAGATCTGCGATGTTGTGCGAAGCCGGGACAGGCATCATTTTTGCGC
TGAGCTTCATACGAAGTACGAAGGATGCATGTAGATAGACCGTGCGGCGA
CAGGACCGAGGCGCGAGAAAGTAATGGAGGGTTTCGCATCTGACGGCACG
GGACGCGGGAGAGAAAGGAGCACAGGGGTTGCGGTTATTGTCTCTGTGGT
TGTGTTTTTGAATATGGCTGCAAACACGCGACACGTACCTAGCTCCCCGC
AACACCACCACAAGCTTCGTGCCTGTGGGCAACCGCCAAATCGCGCAGTA
ACTTTTGGAAAAAAATGAAATCAGAAAATCTGAGACTTTCGTTCTGGGTT
CTACGGAGCTCCGAGCAAACGATGCGGCCGTCACGAGGCTTCCCGGCACT
AGCAGAGGGTAAAAGGCTCGCGTCAGAGGTTAGTCACGACATCTAACGAC
TGCCTTCATTCCGCACCTTTGCTCCAGAGTAGTCAAGAGCTGTGCTATTC
CTACATATGTTACAGCCTTCCGCCCGACCTCTCGGGATCACACCAGACCG
GCAAAAAAAACGCCCCCCCCCGGCTTTTGCTGCTTTTGCTGCTCTCCGCG
GTTCATTACAACAATAGTGGCGCTGCAGCGACTCTCCTTTTGCTGTGGGC
TTTCCCCTCAAACTAAAGGAGATGCTTGTGCATTGTTTGGGTGTGTGCGT
GTAAATATTAGTACTGCGCACGCCGCCCTTTCGTACTTCTTTGTATGTAT
GCATTGTATGTATATATGTACCAGGTACGCAGCAATCAAATACAAATACT
CCGAGAGTTAGTTTTTTCTTAGACTCTCCGCCCCCACGGCGGCGTTTGAG
CACCAAAAAAACTGCCGGAAAGGGCAGCGAAGCATAAATTTCCTTCCCTC
CCTCTGCCTTTTTTTTGTTCTGTCCTCTCTGTGAACATCTACCACTTATT
GTGGTCCTCCGTAGGGTAGTATTCGCAAACTCGATCGACATGTGATTTTG
TCCAATTTTTAGGTTTTAGCCTGTTTCATCAAAAAACATGCTCACCGGGG
GGTCCCGCGGTAGTAACATATTTTCGTCTAATTCCGCTCGTCCACACGCA
CCCCATCCTCGTCCTGCCGTGGCCGGTAGACGGCCCAGTAAGGCGCTATC
GTCTGGCGTCGAAAATACTGTGTCGCCTGGCGAGCGTGTTGGGCTGGACG
GCTGTCGTGATCGGCGCGGGCGAGATCGCTATTGGCGTCGTGTTGTTCAG
CAAATGGGTGAGAGCAGGGCAGCAGACAGAGCCCACCCTTTTGGGCGTGT
TTCTTCGATCGATGGAAGGAAAGCAGTACAGAGGTATTCGGTCGCGGTGA
TGTAAGGCTGAAATCTGGTTTGGTTAAGACCGACAGTCTAAAGGCAGACC
ACCTACAGTACGGGGCGCCTTTATTGCGCGCTGCTGCATAAAAAAAATAG
CAAGTCGATAGAAAGGTGTCTTCGCCAGGCGTGCGGGTTTTCGATTGGAA
TCGTAATCGTTGCACTGCGGGGAATCATGATATGTAACGTCAAGATAATC
GGCAGAGTTTTGCCCACCGTAGTTTTTTTTTTTGTTTTGGGTAAAACTAG
TCCCCCCGGGGGGAAATTGAAGAAGGGGGGGTGGGTCTGTTTTTATTGGA
CTGCTACATACTCCGGGAGGATATCTCCCCCGGGAGGTAGGCCAACAGAT
TGGTGGTCCACAATACAACCACACACAGAAAAAGTGCGGAACCCGCGATA
GATAAGGTGTATGGGCAAGCGTTTAGGAAGGCATGCTTTTAAGTGCCTCG
CGATGCCATCAAAAAACGACTCAAAAAAAGGGAAATGCACCCCCCCCGGG
GGGAACTCGTGGAAAAATTACGACCCCGGGGAGAAATTGAAAAAGGGGGG
GGGGGGGTCGTGGAAATACGATCTACCCCGGGGCAATTCAAAATGTTGAT
GCTTCCAGTCCAAAAAGGTGACCCCCGGGGGGCCGACATTAAGAGGGGGG
GGAAACTCCGCCGATCACGGTACACCACTTCTCAAGAAGCCACCACGTTC
GAAGAGGGCACCACTCCCAACAAATAAGATGAAACCATGCCGCACGAGTT
GTGCGTCGTGTACTACGGTATCGCGTTACATCCACGGCGCCTACCGATTG
GTTCTAACAGCCGTTGCCGTTGTTCGGCGTGTCTCGCAGCGGCGAGAAGG
AGGATGGTGGGCTGGTCTGCTTGGAGCACTGTTGGGCATGGTGGCGACGG
GGATCACGGCCGACACCCCCGTGGGCACTCCGCTCGTGGGCTGGCTGGTG
GTCCTTGGTCTGGTGTCGCTTTTGACAAGCCTCGTCACCTTGCTCGCTCT
CGACGGTGCCACGTGGCTGGACGCAAAGGTGAAAAACAGTGATGCTTTCG
ACTCGTTGTTCTGGCCCCCGTGGAAATCGACGCGCGCCCAAGCACTATTA
TTGCAGTCGATCGACGTTTTTGGGGTTGGTCGGGGTTGTGAAGGCTGCAT
GCATGTTTGGCGGGCTTGCGCCAAAATGAGCACTCGACGGTTTAGTTAGG
ATTTGTTCCGACTTGTTTTTGCACGGCTCAAATGTTGTAGATAAGTACTA
GCGTTGACGAAACGCAGGAGAGAGGGGAGAAAGTTTGAACATTGGAGTGG
ACGACAAGATCAACAAGTGCATGCGCGCAAATCTTAGTCCTCGCGCCCCC
CCCCTTTTCGTTGAAGACCGGGGTGAACGTCGTGGCGGGATCTAAATCCT
ACCCGTTCTCTGTGCGAACGGCCCGTAGGTTCTCTTGAATGTTTCGTTGT
TCACGCTTACATGCACGCCTCGTATTCAGCAGTCTAGATGAGTGTTCTGT
TTTCTGTGCTCTTCAAGATGAAAGCATAACACTTGAAAAAGATGTTCCTG
TGTATTTGCCACACGCTTCTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTACTTGTCCTCGATCTGTGGCTCACACCGGCGGC
GGGGCGCCGCGGCGGTGTACACTGCAGGGCGTCGAGGTCTGTGTCAAGAG
CTTCGACCTCGTGTGCCAGAGTTTTGACTGCGCCTGTTCGACTTCGGATG
ACGCTTGGTGAGTGCCTGCAGCTCCAGTTATTTGAGCCCTTGTGGCGTGA
GGCCCTCAACTACTGCGGTCTATTTTGCCGAACATGCCAAACAAGCACCC
ACCGAGCACACCGCCGCACCTGTCAAACATGCCACGACAACGTTGTCGGG
ACTTCCCTTTTAAATAAACCGCCCGCTTTGCCGACAAGCCGGCACTCCGC
CCCCACCTCGCTTGCTTTCGAAGCATGGATCGCCCTGACCCCAAGCCTAA
AAACCCAACCCCGACATTTACAACCCTGCCGACTACACAGGGACAAGTGT
TTTTCACCCGGGAACGGCGATTGCGGCGGGATCGAGTCTGCGCCCCCCGT
GTTGCTGGCGTCCAGTTTTGCCCTACTGGTCCTGTCCATCGTCTCGGCGT
TACTCCTGGCGGCGGGAATCAAGATCAAGTACCTCGGGGGCGGCGTGGCG
GAAGGAGGGGAGACGGAGAAGACGCGCTCCAGCCACCCCGCCATGATGCC
CAGCAAGAACCCATTTCCGGAGACCCCGGAGCCGGGAAACGAGCGGCACC
GGCACCAGCACCGGCGGAGCAGGGATGAGGGTAAGTATCACAATCGAGGG
CAGCAGCCGCCGAGGGGCTTGGAGGAGGCGAAAAAGACCGCCGTCGGGGC
CGAGTACGAAGAGGAACAGAAGAAGGAGAATGATGAGGATGGCGTGGCCG
TGGTGACGGGTGCTGCTGTGCCGAAGGAGGCAGAGGAGGCACCCGCCGGA
GCGGAGCCGTGGGCGGTGGGGTACGTGGACCGGCTAGCGGGAGGTGGAAA
CAAGAAGCGCCGCGACGAGCTTAACAACCCTGGGCGTGGCGGCGGCGGCG
GCGGCGGCGGTCGCGGCAGCGTAGGGGCGGCGGTATCCCAGTAGGTGTCC
TACCGACTTTCCATGAATGGGTGTGGGCTCTTGTTCGGCGGATGGAAGGG
CTGGTTTGTTAGACCCCGCGTCGTGCAGAGGCGAGGGCTTGGAATCGGCG
AGTTGTCACGTGTTCTGTTACCTCGGCGAAAATGAAGGGCATCGCATTTC
ACTGATTTCCCGAAGAAGTTGATGGCACTACCGCAATCCCCTCTGATCCG
CCTTAACGGTTTTTGGTCCTGCCCCCACCTCCTTTGCGGTGACAAAGCAT
GAATACGGGATTTCCCCCAAGATTTGTTTTTTATCCTCCCCGGCACCCAC
GATTCGTCCTCCCGATTCTTCCAGTCGCAATTTTTTCTTGTGATTTAGCA
TGACGGCGGATCAAAAGTGCGTGCGTGCTTTTTCGGCCGAACACGCCACT
TTCTTTGCACGGGTGTGTGCACCTTGAGTGGTTTGATGGTGCAGTTATTG
GTTGGTCTGCCGTGCATGTTTTGGGCGTTTGCTTTCATTTCTTGGTGTGT
GTGTCGTCGTGGTACATAACATAGATACCCGGCCTCGGTGGTGTTCCG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1709:14805..20152- >mRNA_L-elsbetiae_contig1709.4735.1 ID=mRNA_L-elsbetiae_contig1709.4735.1|Name=mRNA_L-elsbetiae_contig1709.4735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1650bp|location=Sequence derived from alignment at L-elsbetiae_contig1709:14805..20152- (Laminarionema elsbetiae ELsaHSoW15) ATGGTGGCGACGGGGATCACGGCCGACACCCCCGTGGGCACTCCGCTCGT GGGCTGGCTGGTGGTCCTTGGTCTGGTGTCGCTTTTGACAAGCCTCGTCA CCTTGCTCGCTCTCGACGGTGCCACGTGGCTGGACGCAAAGATGGTGGCG ACGGGGATCACGGCCGACACCCCCGTGGGCACTCCGCTCGTGGGCTGGCT GGTGGTCCTTGGTCTGGTGTCGCTTTTGACAAGCCTCGTCACCTTGCTCG CTCTCGACGGTGCCACGTGGCTGGACGCAAAGGGCGTCGAGGTCTGTGTC AAGAGCTTCGACCTCGTGTGCCAGAGTTTTGACTGCGCCTGTTCGACTTC GGATGACGCTTGGGCGTCGAGGTCTGTGTCAAGAGCTTCGACCTCGTGTG CCAGAGTTTTGACTGCGCCTGTTCGACTTCGGATGACGCTTGGGACAAGT GTTTTTCACCCGGGAACGGCGATTGCGGCGGGATCGAGTCTGCGCCCCCC GTGTTGCTGGCGTCCAGTTTTGCCCTACTGGTCCTGTCCATCGTCTCGGC GTTACTCCTGGCGGCGGGAATCAAGATCAAGTACCTCGGGGGCGGCGTGG CGGAAGGAGGGGAGACGGAGAAGACGCGCTCCAGCCACCCCGCCATGATG CCCAGCAAGAACCCATTTCCGGAGACCCCGGAGCCGGGAAACGAGCGGCA CCGGCACCAGCACCGGCGGAGCAGGGATGAGGGTAAGTATCACAATCGAG GGCAGCAGCCGCCGAGGGGCTTGGAGGAGGCGAAAAAGACCGCCGTCGGG GCCGAGTACGAAGAGGAACAGAAGAAGGAGAATGATGAGGATGGCGTGGC CGTGGTGACGGGTGCTGCTGTGCCGAAGGAGGCAGAGGAGGCACCCGCCG GAGCGGAGCCGTGGGCGGTGGGGTACGTGGACCGGCTAGCGGGAGGTGGA AACAAGAAGCGCCGCGACGAGCTTAACAACCCTGGGCGTGGCGGCGGCGG CGGCGGCGGCGGTCGCGGCAGCGTAGGGGCGGCGGTATCCCAGTAGGGAC AAGTGTTTTTCACCCGGGAACGGCGATTGCGGCGGGATCGAGTCTGCGCC CCCCGTGTTGCTGGCGTCCAGTTTTGCCCTACTGGTCCTGTCCATCGTCT CGGCGTTACTCCTGGCGGCGGGAATCAAGATCAAGTACCTCGGGGGCGGC GTGGCGGAAGGAGGGGAGACGGAGAAGACGCGCTCCAGCCACCCCGCCAT GATGCCCAGCAAGAACCCATTTCCGGAGACCCCGGAGCCGGGAAACGAGC GGCACCGGCACCAGCACCGGCGGAGCAGGGATGAGGGTAAGTATCACAAT CGAGGGCAGCAGCCGCCGAGGGGCTTGGAGGAGGCGAAAAAGACCGCCGT CGGGGCCGAGTACGAAGAGGAACAGAAGAAGGAGAATGATGAGGATGGCG TGGCCGTGGTGACGGGTGCTGCTGTGCCGAAGGAGGCAGAGGAGGCACCC GCCGGAGCGGAGCCGTGGGCGGTGGGGTACGTGGACCGGCTAGCGGGAGG TGGAAACAAGAAGCGCCGCGACGAGCTTAACAACCCTGGGCGTGGCGGCG GCGGCGGCGGCGGCGGTCGCGGCAGCGTAGGGGCGGCGGTATCCCAGTAG back to top
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