mRNA_L-elsbetiae_contig17082.4733.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17082.4733.1
Unique NamemRNA_L-elsbetiae_contig17082.4733.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.220e-39
Identity = 92/132 (69.70%), Postives = 100/132 (75.76%), Query Frame = 2 
Query:  407 RWASYQDVISFASLHQSFTSMTD-IMLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQSYMAAQLPGGDPTN-KSGSSSHPRASSPVGVLSFRRRSHTDTGGGGGAAE-----ADPLLS 781
            RWA Y+DVISFASLHQSF +MTD IMLSNW +FMDAAGDVG V+TA+LFFY+FKVLTFYFVMPVMLGFIVQSYMAA +PG D  N K   SS  RA S    LSF RRSH D GG GGA +     A PL S
Sbjct:  619 RWAYYKDVISFASLHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKLFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAVSDS--LSFSRRSHRDGGGRGGAEDGRGGSASPLSS 748
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BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.610e-36
Identity = 85/131 (64.89%), Postives = 97/131 (74.05%), Query Frame = 2 
Query:  407 RWASYQDVISFASLHQSFTSMTDI-MLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQSYMAAQLPGGDPTNKSGSSSHPRASSPVGVLSFRRRSHTDTGGGGGAAE-----ADPLLS 781
            RWA Y+DV+SFASLHQSF +MTDI MLSNW +FMDAAGDVG V+TA++FFY+FKVLTFYFVMPVMLGFIVQSYMAA +PG D  N   + S    + P   LSF RRS  D GG GGA +     A PL S
Sbjct:  752 RWAYYKDVLSFASLHQSFAAMTDIVMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAIPH-SLSFSRRSPRDGGGRGGAEDGRGGPASPLSS 881
[Close]
BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-16
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 2 
Query:  407 RWASYQDVISFASLHQSFTSMTDI-MLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQSYMAAQLP 640
            R+A+ ++V +FA+L +S+ SM  + M SNW MFMDAAG VG ++ A++FFY+FK + FYFVMPV+LGFIV SYM A +P
Sbjct:  264 RFAAVKEVANFATLPRSYASMMYVVMFSNWPMFMDAAGVVGNLVVAKVFFYSFKAIGFYFVMPVLLGFIVTSYMNAHVP 342
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR41_ECTSI6.220e-3969.70Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5L0T6_9PHAE1.610e-3664.89Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FGS1_ECTSI1.400e-1656.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17082contigL-elsbetiae_contig17082:2020..3327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size812
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17082.4733.1prot_L-elsbetiae_contig17082.4733.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17082 2486..3327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.4726424-UTR-L-elsbetiae_contig17082:2019..24851622815711.4726424-UTR-L-elsbetiae_contig17082:2019..2485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17082 2020..2485 +
1691683053.0955553-UTR-L-elsbetiae_contig17082:2019..24851691683053.0955553-UTR-L-elsbetiae_contig17082:2019..2485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17082 2020..2485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.485134-CDS-L-elsbetiae_contig17082:2485..25841622815711.485134-CDS-L-elsbetiae_contig17082:2485..2584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17082 2486..2584 +
1691683053.1050444-CDS-L-elsbetiae_contig17082:2485..25841691683053.1050444-CDS-L-elsbetiae_contig17082:2485..2584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17082 2486..2584 +
1622815711.502666-CDS-L-elsbetiae_contig17082:3081..33271622815711.502666-CDS-L-elsbetiae_contig17082:3081..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17082 3082..3327 +
1691683053.114142-CDS-L-elsbetiae_contig17082:3081..33271691683053.114142-CDS-L-elsbetiae_contig17082:3081..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17082 3082..3327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17082.4733.1

>prot_L-elsbetiae_contig17082.4733.1 ID=prot_L-elsbetiae_contig17082.4733.1|Name=mRNA_L-elsbetiae_contig17082.4733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MTDIMLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQ
SYMAAQLPGGDPTNKSGSSSHPRASSPVGVLSFRRRSHTDTGGGGGAAEA
DPLLSGSRSHGDKGG
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mRNA from alignment at L-elsbetiae_contig17082:2020..3327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17082.4733.1 ID=mRNA_L-elsbetiae_contig17082.4733.1|Name=mRNA_L-elsbetiae_contig17082.4733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig17082:2020..3327+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTTTCAGGTTGCTGAAAGAGGGATGCATACGCACCACGAAGTGCAGAA
TCTCTTCTGCCTGTCTATCCTCGTGAAGGGGTGACGCAAAACCCATGTGC
GAAGACAGGTACTGAGATAGAAAAATCAAAAGTTGTGCATATGCTTGCCA
CGCTCTTCTGTTCCCCGTATTAGAAATGCTTCGAAATTTGTGTGTACATA
TTTACGTCTACATACGATACAAACTTTTTAAATTTTGGTATCGTGAAGCG
TTGACGGCAGCCATCTTGTTTGCTGAGCAGCAATGCTACATACAGACGCG
GCAAATACACCAACGATAGATACCAAGAGAGCACGAGATTCCTCGTCTTT
GTCTTAGGCCGCCTGGTCTCCCCGAACAATGCTCGCTGCTCGCTGTGTGT
TGCTGAAGGTGGGCATCCTACCAGGACGTCATTTCTTTCGCGTCGTTGCA
TCAGTCCTTCACTTCCATGACCGACATCATGCTGTCGAACTGGACGATGT
TTATGGACGCGGCGGGAGATGTTGGCGGTGTTATGACCGCGAGGCTATTC
TTCTACACCTTCAAGGTCAGCAGCGATTGGACACCCTGAGTGTTTTGTTG
TCTCGTCGGGGGGGGGTTGTGGTTGGCGTGATTATGTTTCTGTGTCTCGC
GGCGTTTTTGTGTTTTTAGTTTTAGATGTGCCTCCGATGATGATATTGAT
TCCGCTCACGATGCAAGCAAAGCGTCTCGTGCTTGCGGCGGTCCGCGTGT
GTAACCTGCACTGCACTGACTGCTGTTGATGTACGTATGTGGTAAGTTAT
ATGAGGTGTGTTTAGTTCGGACGCCTTGTGTGTCAAGTGTTGGTTCGTTC
TCGCGGTGGACGCCATGGATGCCGTCGTTGAACCCGAGGCGTTGCAACCC
CCTCCATAGCCGCTTTACTCGCCGTAGCGATATTATTATTCACCTCCATC
GTCAGCAAATCACAGCAGCGCCCGGCGGCGACCTAGTGCTCCCCCTCCCA
ACCTCCCACCCTCTACCACCACCCCGCTCGCCCGCCTCTGCTGGTTCTTT
TCATTTTTGCAGGTGTTGACGTTCTATTTCGTTATGCCGGTCATGCTCGG
CTTTATCGTCCAGTCGTACATGGCGGCACAGCTGCCGGGTGGCGACCCAA
CCAATAAGTCGGGCTCGTCATCCCACCCACGCGCCAGCAGTCCTGTTGGC
GTCCTGTCGTTCCGCAGAAGATCGCACACGGACACGGGAGGAGGAGGGGG
TGCAGCGGAAGCCGATCCGTTGTTGTCGGGCAGCAGGTCTCACGGAGATA
AGGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17082:2020..3327+

>mRNA_L-elsbetiae_contig17082.4733.1 ID=mRNA_L-elsbetiae_contig17082.4733.1|Name=mRNA_L-elsbetiae_contig17082.4733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig17082:2020..3327+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGACATCATGCTGTCGAACTGGACGATGTTTATGGACGCGGCGGG
AGATGTTGGCGGTGTTATGACCGCGAGGCTATTCTTCTACACCTTCAAGA
TGACCGACATCATGCTGTCGAACTGGACGATGTTTATGGACGCGGCGGGA
GATGTTGGCGGTGTTATGACCGCGAGGCTATTCTTCTACACCTTCAAGGT
GTTGACGTTCTATTTCGTTATGCCGGTCATGCTCGGCTTTATCGTCCAGT
CGTACATGGCGGCACAGCTGCCGGGTGGCGACCCAACCAATAAGTCGGGC
TCGTCATCCCACCCACGCGCCAGCAGTCCTGTTGGCGTCCTGTCGTTCCG
CAGAAGATCGCACACGGACACGGGAGGAGGAGGGGGTGCAGCGGAAGCCG
ATCCGTTGTTGTCGGGCAGCAGGTCTCACGGAGATAAGGGGGGGGTGTTG
ACGTTCTATTTCGTTATGCCGGTCATGCTCGGCTTTATCGTCCAGTCGTA
CATGGCGGCACAGCTGCCGGGTGGCGACCCAACCAATAAGTCGGGCTCGT
CATCCCACCCACGCGCCAGCAGTCCTGTTGGCGTCCTGTCGTTCCGCAGA
AGATCGCACACGGACACGGGAGGAGGAGGGGGTGCAGCGGAAGCCGATCC
GTTGTTGTCGGGCAGCAGGTCTCACGGAGATAAGGGGGGG
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