mRNA_L-elsbetiae_contig1708.4731.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1708.4731.1
Unique NamemRNA_L-elsbetiae_contig1708.4731.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1708.4731.1 vs. uniprot
Match: D8LK91_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK91_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.430e-9
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  256 MAGDVMQDYLNQLVEESVAASENQTCSIAFVKTHKTASTTA 378
            MAG+ M++YLN LV+ESVAA++NQTC+IAFVKTHKTASTTA
Sbjct:    1 MAGNAMREYLNLLVDESVAATKNQTCNIAFVKTHKTASTTA 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1708.4731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK91_ECTSI1.430e-978.05Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1708contigL-elsbetiae_contig1708:8644..9416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog2880.D8LK91
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EggNOG free text desc.galactosylceramide sulfotransferase activity
EggNOG OGs2CM97@1,2QPNT@2759
EC2.8.2.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Ec32 ortholog descriptionGalactose-3-O-sulfotransferase
Ec32 orthologEc-09_000360.1
Exons2
Model size382
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.256904-CDS-L-elsbetiae_contig1708:8645..86961622815711.256904-CDS-L-elsbetiae_contig1708:8645..8696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1708 8646..8696 -
1691683052.9423873-CDS-L-elsbetiae_contig1708:8645..86961691683052.9423873-CDS-L-elsbetiae_contig1708:8645..8696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1708 8646..8696 -
1622815711.270207-CDS-L-elsbetiae_contig1708:9089..94161622815711.270207-CDS-L-elsbetiae_contig1708:9089..9416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1708 9090..9416 -
1691683052.9550712-CDS-L-elsbetiae_contig1708:9089..94161691683052.9550712-CDS-L-elsbetiae_contig1708:9089..9416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1708 9090..9416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1708.4731.1prot_L-elsbetiae_contig1708.4731.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1708 8646..9416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1708.4731.1

>prot_L-elsbetiae_contig1708.4731.1 ID=prot_L-elsbetiae_contig1708.4731.1|Name=mRNA_L-elsbetiae_contig1708.4731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
GAHSLQREEEGEVRLDAERQHQLRQKFQPSRQLDGDNNNEHSGEHDETAT
AEGGSNVAESSDGDRSARHGAGMVKFRMGGRVEQVMAGDVMQDYLNQLVE
ESVAASENQTCSIAFVKTHKTASTTA
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mRNA from alignment at L-elsbetiae_contig1708:8644..9416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1708.4731.1 ID=mRNA_L-elsbetiae_contig1708.4731.1|Name=mRNA_L-elsbetiae_contig1708.4731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=773bp|location=Sequence derived from alignment at L-elsbetiae_contig1708:8644..9416- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTCACTCCCTTCAACGCGAGGAGGAAGGAGAAGTGCGCCTGGATGC
GGAAAGACAGCACCAGTTGCGGCAAAAATTTCAACCATCGCGACAACTGG
ATGGTGACAACAATAACGAGCACAGTGGCGAGCATGATGAAACAGCTACC
GCCGAGGGTGGCTCAAACGTCGCTGAAAGCAGCGATGGTGACAGGAGTGC
GAGACATGGTGCCGGAATGGTCAAGTTTCGGATGGGGGGCAGGGTGGAGC
AGGTCATGGCCGGCGACGTCATGCAAGACTACCTGAATCAACTCGTGGAA
GAGAGTGTGGCTGCCTCCGAGAACCAGGTTTGTTTGTTAGTACATACCTC
AATTAGACTACGCGTGTTTCGAAATACAAACGACATGGTACCAGGTACGT
AGATATATGTAGGACATAAGCGTCGCGAGGGACAGTTTTTCGTCAAGACT
CGGTAGAACTTTGCCGCCGAATTTGTACCCTCTTCGCTCAGATTCACAAA
AGCCTACCATATGTCCTTCAGCCGTGGTTCTTGGTCGTACTCCCGCGGAT
CCGGAGATATTCCTGGAAGATATCGACAGCAGCAGTGGCCATAATACTTG
CAGCGAGCGTAAAAAATAATGAAACAGTTTAGATCAAAGCAGTTATTTCG
TTGTGCCTCGATCTTCCTTCTTTCTCTCACACGGGCGACATACAAACCAA
TCGCCCCCACATCGGTACAGACATGCAGCATCGCATTCGTGAAGACACAC
AAGACGGCGTCGACAACCGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1708:8644..9416-

>mRNA_L-elsbetiae_contig1708.4731.1 ID=mRNA_L-elsbetiae_contig1708.4731.1|Name=mRNA_L-elsbetiae_contig1708.4731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig1708:8644..9416- (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTCACTCCCTTCAACGCGAGGAGGAAGGAGAAGTGCGCCTGGATGC
GGAAAGACAGCACCAGTTGCGGCAAAAATTTCAACCATCGCGACAACTGG
ATGGTGACAACAATAACGAGCACAGTGGCGAGCATGATGAAACAGCTACC
GCCGAGGGTGGCTCAAACGTCGCTGAAAGCAGCGATGGTGACAGGAGTGC
GAGACATGGTGCCGGAATGGTCAAGTTTCGGATGGGGGGCAGGGTGGAGC
AGGTCATGGCCGGCGACGTCATGCAAGACTACCTGAATCAACTCGTGGAA
GAGAGTGTGGCTGCCTCCGAGAACCAGGGGGCTCACTCCCTTCAACGCGA
GGAGGAAGGAGAAGTGCGCCTGGATGCGGAAAGACAGCACCAGTTGCGGC
AAAAATTTCAACCATCGCGACAACTGGATGGTGACAACAATAACGAGCAC
AGTGGCGAGCATGATGAAACAGCTACCGCCGAGGGTGGCTCAAACGTCGC
TGAAAGCAGCGATGGTGACAGGAGTGCGAGACATGGTGCCGGAATGGTCA
AGTTTCGGATGGGGGGCAGGGTGGAGCAGGTCATGGCCGGCGACGTCATG
CAAGACTACCTGAATCAACTCGTGGAAGAGAGTGTGGCTGCCTCCGAGAA
CCAGACATGCAGCATCGCATTCGTGAAGACACACAAGACGGCGTCGACAA
CCGCGACATGCAGCATCGCATTCGTGAAGACACACAAGACGGCGTCGACA
ACCGCG
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