mRNA_L-elsbetiae_contig17062.4728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17062.4728.1
Unique NamemRNA_L-elsbetiae_contig17062.4728.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17062.4728.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.030e-30
Identity = 73/90 (81.11%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:  208 GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGPXXXXXXXXXALPGQGNHLLNRRTRGAAGSPTDEDQEGEFDFEAGLAKFDKEKA 477
            GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPG XXXXXXXXXALPGQGNHLLNRRT               FDFEAGLAKFDKEK+
Sbjct:  137 GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXALPGQGNHLLNRRTXXXXXXXXX--XXXXFDFEAGLAKFDKEKS 224
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BLAST of mRNA_L-elsbetiae_contig17062.4728.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.830e-25
Identity = 68/89 (76.40%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:  208 GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGPXXXXXXXXXALPGQGNHLLNRRTRGAAGSPTDEDQEGEFDFEAGLAKFDKEK 474
            GS TMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPG XXXXXXXXX LPGQGNHLLNRRT                  EAGLAKFDKEK
Sbjct:  138 GSPTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXXLPGQGNHLLNRRTXXXXXXXXX--XXXXXXXEAGLAKFDKEK 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17062.4728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK17_ECTSI4.030e-3081.11Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE8.830e-2576.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17062contigL-elsbetiae_contig17062:1102..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue3.2e-25
Seed eggNOG ortholog2880.D7FK17
Preferred nameLSM14A
KEGG koko:K18749
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG1073@1,KOG1073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Ec32 ortholog descriptionNovel Sm-like protein with long N- and C-terminal domains.
Ec32 orthologEc-18_002800.1
Exons3
Model size489
Cds size489
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17062.4728.1prot_L-elsbetiae_contig17062.4728.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17062 1102..3508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.020189-CDS-L-elsbetiae_contig17062:1101..12881622815711.020189-CDS-L-elsbetiae_contig17062:1101..1288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17062 1102..1288 -
1691683052.7659526-CDS-L-elsbetiae_contig17062:1101..12881691683052.7659526-CDS-L-elsbetiae_contig17062:1101..1288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17062 1102..1288 -
1622815711.0344112-CDS-L-elsbetiae_contig17062:2401..24721622815711.0344112-CDS-L-elsbetiae_contig17062:2401..2472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17062 2402..2472 -
1691683052.7786777-CDS-L-elsbetiae_contig17062:2401..24721691683052.7786777-CDS-L-elsbetiae_contig17062:2401..2472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17062 2402..2472 -
1622815711.0469365-CDS-L-elsbetiae_contig17062:3277..35081622815711.0469365-CDS-L-elsbetiae_contig17062:3277..3508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17062 3278..3508 -
1691683052.7891078-CDS-L-elsbetiae_contig17062:3277..35081691683052.7891078-CDS-L-elsbetiae_contig17062:3277..3508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17062 3278..3508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17062.4728.1

>prot_L-elsbetiae_contig17062.4728.1 ID=prot_L-elsbetiae_contig17062.4728.1|Name=mRNA_L-elsbetiae_contig17062.4728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
QTAEPPAPPPVAPTVETPPPPPATAPPATRVAPDAAAGGAEAAVQERVQA
AAAAVEENGDAAAEDAAGSGSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQ
RGPPGPGSGAGSGTGALPGQGNHLLNRRTRGAAGSPTDEDQEGEFDFEAG
LAKFDKEKARLR*
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mRNA from alignment at L-elsbetiae_contig17062:1102..3508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17062.4728.1 ID=mRNA_L-elsbetiae_contig17062.4728.1|Name=mRNA_L-elsbetiae_contig17062.4728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2407bp|location=Sequence derived from alignment at L-elsbetiae_contig17062:1102..3508- (Laminarionema elsbetiae ELsaHSoW15)
CAGACGGCGGAGCCGCCTGCGCCGCCACCGGTGGCGCCGACGGTAGAGAC
GCCGCCCCCCCCTCCCGCCACCGCACCCCCGGCAACCCGTGTGGCCCCCG
ATGCGGCAGCAGGCGGAGCCGAGGCAGCCGTCCAAGAGAGGGTTCAGGCA
GCAGCGGCGGCGGTGGAGGAGAACGGGGACGCGGCGGCGGAAGACGCCGC
CGGTTCCGGTTCTTCCACGATGAGGGACCAGGTGTGTGTGTGTGTGTGTA
TTAGGTGTATGTGTCATACAAGTATATGCGGAGTAAAACCAGATGTGTGT
GTGTGTGTATTAGGTGTATGTCTCATACAAGTATATGCGGAGTAAGACCA
GATGTGTGTGTGTGTGGGTGTGTGTAATATATGTATGTCTCATGCAAGCA
TGTGCGACGTATGTTTTTTTTTATGGTTTTGTTTTTGCTGTGGTTTTTCG
TTTCATCGACCACGCTTGGTGAGTCGGTTGGCTCTGCTTGCTGACCCGAA
AGATGTCGTTGAGAGACTCGGCTCTTAGCGGCGTAGGACGAAGGAAAGGC
GAGAAACACTCCGTAGCCTTCGCGGGTTTTATTGACTGGAAAAGAAATCA
CACGGGATAACAGTATGGAAACGGCTAATGGGGGATCGGTTCGGGGTTGG
TTAGGGTTGGGGTTGCGGAAACCCTGTCTATTACTTTTCTATGATATAAT
ATTTTTCTAATATTTTTCTATAGATACTAGATAGGAATTGTTCGCGAAGA
CGGTGTCGGGTTTTCTGTCTGTTCCGGGAAGGGTCAGGAAGGAAGGTGTC
ATTCGTGACCCGGTAACACGCGCGATCCGCGATATATGTGTGTAAAATGC
AAGCAAGCACCCGGATAAGACCCGTCTTGTATCGTGCAGTGACATTTGTG
TCTTTGTTGTGTGAGAAACAAAGGGCGGGGTTAGCGACCCCCCCCCCCCT
CCCCCTGCCTGCGCCCAACGCAGCTCGCCAAACCAAACTCGTGTCGTATT
GTTCGAAAATCACGTTCGGCCTTCTGCGCTGCGCAGGGGCTGAAGCCCGG
GAGGTACCAGCCGCCTCACAAGAACCCCAACTGGAAGCCACCCCCGACTG
TGCAGAGGTGAGCGAGGAGACGAGGAGAGAGAACCAAGGTAGTTTGCCGG
AATCGCCCTCGGGCTTACGAGTGCGAGTGCTTTCCGCTTTGCCGCTTATC
GCGCGGCGACGGGTTTCGACGGAGCGCCTCTGTACAGCAGTAAATTAGCT
CGTGTACCGCCGTAGACGACACAAGATTTCACACCCACTGGACTGAGTTT
CAAGCCTCAACTACTCCACAGCGAGAAGAGTGACAGTCCCGAAAAGGGCG
GCGTTGGAAAGATCTCATTGAGAGCTGTCCGAAAACGTGTCGTTTGGTAT
GAGAACCATACTCGTTGCGGAGTAACCGAGCTTTGAAAAATGGTCCAGGG
GGTGTGTTATCTTGTGTCGTATACGGTACACGTTGCATGTCGTTTTTAGC
GTTAAGGTGCCTACGGACTGCGGAAGAAACGACCGGTCTACCGTCGTAGG
TGACACAAGATACCACCCCCCTGGACATATTTTCAAAGCTCAATCCCTCC
CCAGCAAGAAGAGTGTCAGTGCCGAAAGGGGTGGCGTTGGAAGGATCTAG
TCGAGGGCGGTCCGAAAATGTGTCGTTTGGTGCTGGCGCCCTCTTCGCTA
CGGAGGATTCGTGCTCTGAAAGTTTGTCTAGGGGGTGGTATATTGGGTCG
CCTACGGTATGCAAGTGTAAGTAATGCGTCGAGTCGGTTGACGGCCTCAA
ACTATGTTCCAACGCAGAGAAAAACCCGCGACGTTTTGGTCGGTACTGAC
TAACTGTACGATAAAAATCGCTGGGAAAACCCCGCCGAAAGCTGAAGGAT
AAACAAACACTAAACACGCAAGCGGGGGAGAGTCGCCGCCGACTGATATC
CCATTAGAAAAAAAAATCTCCACACCACAAAAAAAAAAAGAAAAGCGTGT
GCAATGTCAATAAATAACTCTACTGTTGCGCGACGAAAATCGTTCCTTTG
ACGAAACAAAAAAACGCCTACTTGTATGTTTATGTGTGTACATAAAAAAC
GACCTATCACAGGTCGGACAGTCGCAGGCCGCTGACATTTCTTTTAGTAC
ATGGAGCATTTATTAAAAAAATATGAGACTAAAATGTCTCTGCCTTGCGG
GGGCGACGACGCAACCACAGGGGGCCCCCCGGACCCGGCAGCGGGGCGGG
GTCCGGCACGGGCGCTCTTCCGGGGCAGGGGAACCACCTGCTCAACAGGC
GCACGCGCGGGGCGGCGGGGTCCCCGACGGACGAGGATCAGGAAGGGGAG
TTCGACTTCGAGGCAGGCCTCGCCAAGTTCGATAAGGAGAAGGCAAGATT
AAGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17062:1102..3508-

>mRNA_L-elsbetiae_contig17062.4728.1 ID=mRNA_L-elsbetiae_contig17062.4728.1|Name=mRNA_L-elsbetiae_contig17062.4728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig17062:1102..3508- (Laminarionema elsbetiae ELsaHSoW15)
CAGACGGCGGAGCCGCCTGCGCCGCCACCGGTGGCGCCGACGGTAGAGAC
GCCGCCCCCCCCTCCCGCCACCGCACCCCCGGCAACCCGTGTGGCCCCCG
ATGCGGCAGCAGGCGGAGCCGAGGCAGCCGTCCAAGAGAGGGTTCAGGCA
GCAGCGGCGGCGGTGGAGGAGAACGGGGACGCGGCGGCGGAAGACGCCGC
CGGTTCCGGTTCTTCCACGATGAGGGACCAGCAGACGGCGGAGCCGCCTG
CGCCGCCACCGGTGGCGCCGACGGTAGAGACGCCGCCCCCCCCTCCCGCC
ACCGCACCCCCGGCAACCCGTGTGGCCCCCGATGCGGCAGCAGGCGGAGC
CGAGGCAGCCGTCCAAGAGAGGGTTCAGGCAGCAGCGGCGGCGGTGGAGG
AGAACGGGGACGCGGCGGCGGAAGACGCCGCCGGTTCCGGTTCTTCCACG
ATGAGGGACCAGGGGCTGAAGCCCGGGAGGTACCAGCCGCCTCACAAGAA
CCCCAACTGGAAGCCACCCCCGACTGTGCAGAGGGGCTGAAGCCCGGGAG
GTACCAGCCGCCTCACAAGAACCCCAACTGGAAGCCACCCCCGACTGTGC
AGAGGGGGCCCCCCGGACCCGGCAGCGGGGCGGGGTCCGGCACGGGCGCT
CTTCCGGGGCAGGGGAACCACCTGCTCAACAGGCGCACGCGCGGGGCGGC
GGGGTCCCCGACGGACGAGGATCAGGAAGGGGAGTTCGACTTCGAGGCAG
GCCTCGCCAAGTTCGATAAGGAGAAGGCAAGATTAAGATAGGGGGCCCCC
CGGACCCGGCAGCGGGGCGGGGTCCGGCACGGGCGCTCTTCCGGGGCAGG
GGAACCACCTGCTCAACAGGCGCACGCGCGGGGCGGCGGGGTCCCCGACG
GACGAGGATCAGGAAGGGGAGTTCGACTTCGAGGCAGGCCTCGCCAAGTT
CGATAAGGAGAAGGCAAGATTAAGATAG
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