mRNA_L-elsbetiae_contig17056.4726.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17056.4726.1
Unique NamemRNA_L-elsbetiae_contig17056.4726.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17056.4726.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.750e-7
Identity = 44/83 (53.01%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  145 AEEVECDDAAPARRSKRARKEKSAFGEGPVGTVADRAGAGNXXXXXXXXXXXXXXXDKDASRRSASFSHSAHTSPFSTPTRTA 393
            A+E E D   PARRSKRARKEKS FG+ P    A  AG G+               +K A R S SFSHS HTSPFSTPTR+A
Sbjct: 1800 ADETEADGVIPARRSKRARKEKSTFGDSPERPTA-AAGRGSSGSGREAAGK-----EKGAPRPS-SFSHSTHTSPFSTPTRSA 1875
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BLAST of mRNA_L-elsbetiae_contig17056.4726.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.780e-7
Identity = 44/83 (53.01%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  145 AEEVECDDAAPARRSKRARKEKSAFGEGPVGTVADRAGAGNXXXXXXXXXXXXXXXDKDASRRSASFSHSAHTSPFSTPTRTA 393
            A+E E D   PARRSKRARKEKS FG+ P    A  AG G+               +K A R S SFSHS HTSPFSTPTR+A
Sbjct: 2372 ADEAEADGVIPARRSKRARKEKSTFGDSPERPTA-AAGRGSSGSGREAAGK-----EKGAPRPS-SFSHSTHTSPFSTPTRSA 2447
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17056.4726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8B2_9PHAE3.750e-753.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K5_ECTSI3.780e-753.01Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17056contigL-elsbetiae_contig17056:1776..2184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.8552098-CDS-L-elsbetiae_contig17056:1775..21831622815710.8552098-CDS-L-elsbetiae_contig17056:1775..2183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17056 1776..2183 +
1691683052.6563246-CDS-L-elsbetiae_contig17056:1775..21831691683052.6563246-CDS-L-elsbetiae_contig17056:1775..2183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17056 1776..2183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17056.4726.1prot_L-elsbetiae_contig17056.4726.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17056 1776..2183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17056.4726.1

>prot_L-elsbetiae_contig17056.4726.1 ID=prot_L-elsbetiae_contig17056.4726.1|Name=mRNA_L-elsbetiae_contig17056.4726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
VDPDSESQDASRAAVAAEEVDGGEPEQEKEELDAEDGGRQEGAAAESGAE
EVECDDAAPARRSKRARKEKSAFGEGPVGTVADRAGAGNSGGGGGGGRGK
EPRKDKDASRRSASFSHSAHTSPFSTPTRTASPSAS
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mRNA from alignment at L-elsbetiae_contig17056:1776..2184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17056.4726.1 ID=mRNA_L-elsbetiae_contig17056.4726.1|Name=mRNA_L-elsbetiae_contig17056.4726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=409bp|location=Sequence derived from alignment at L-elsbetiae_contig17056:1776..2184+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGACCCAGACTCAGAGTCGCAGGATGCGAGTCGTGCTGCTGTCGCCGC
AGAAGAGGTTGACGGTGGCGAGCCGGAGCAGGAGAAGGAGGAGCTGGACG
CTGAGGACGGAGGCCGGCAAGAAGGGGCCGCCGCGGAGAGCGGCGCTGAG
GAGGTCGAGTGCGACGACGCGGCGCCGGCCAGGCGGTCTAAGCGGGCGAG
AAAAGAGAAGTCGGCCTTCGGGGAGGGGCCGGTGGGGACCGTGGCCGATC
GCGCTGGTGCCGGCAACAGCGGCGGCGGCGGCGGCGGCGGAAGAGGGAAA
GAACCGAGGAAGGATAAAGACGCTTCTCGGCGGTCGGCATCGTTCTCTCA
CAGCGCCCACACCAGCCCGTTTTCCACCCCGACCCGCACGGCTTCTCCTT
CGGCGTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17056:1776..2184+

>mRNA_L-elsbetiae_contig17056.4726.1 ID=mRNA_L-elsbetiae_contig17056.4726.1|Name=mRNA_L-elsbetiae_contig17056.4726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig17056:1776..2184+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGACCCAGACTCAGAGTCGCAGGATGCGAGTCGTGCTGCTGTCGCCGC
AGAAGAGGTTGACGGTGGCGAGCCGGAGCAGGAGAAGGAGGAGCTGGACG
CTGAGGACGGAGGCCGGCAAGAAGGGGCCGCCGCGGAGAGCGGCGCTGAG
GAGGTCGAGTGCGACGACGCGGCGCCGGCCAGGCGGTCTAAGCGGGCGAG
AAAAGAGAAGTCGGCCTTCGGGGAGGGGCCGGTGGGGACCGTGGCCGATC
GCGCTGGTGCCGGCAACAGCGGCGGCGGCGGCGGCGGCGGAAGAGGGAAA
GAACCGAGGAAGGATAAAGACGCTTCTCGGCGGTCGGCATCGTTCTCTCA
CAGCGCCCACACCAGCCCGTTTTCCACCCCGACCCGCACGGCTTCTCCTT
CGGCGTCGGTCGACCCAGACTCAGAGTCGCAGGATGCGAGTCGTGCTGCT
GTCGCCGCAGAAGAGGTTGACGGTGGCGAGCCGGAGCAGGAGAAGGAGGA
GCTGGACGCTGAGGACGGAGGCCGGCAAGAAGGGGCCGCCGCGGAGAGCG
GCGCTGAGGAGGTCGAGTGCGACGACGCGGCGCCGGCCAGGCGGTCTAAG
CGGGCGAGAAAAGAGAAGTCGGCCTTCGGGGAGGGGCCGGTGGGGACCGT
GGCCGATCGCGCTGGTGCCGGCAACAGCGGCGGCGGCGGCGGCGGCGGAA
GAGGGAAAGAACCGAGGAAGGATAAAGACGCTTCTCGGCGGTCGGCATCG
TTCTCTCACAGCGCCCACACCAGCCCGTTTTCCACCCCGACCCGCACGGC
TTCTCCTTCGGCGTCG
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