mRNA_L-elsbetiae_contig1705.4724.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1705.4724.1
Unique NamemRNA_L-elsbetiae_contig1705.4724.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1705.4724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1705contigL-elsbetiae_contig1705:2772..3429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size660
Cds size522
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.6461225-CDS-L-elsbetiae_contig1705:2771..32931622815710.6461225-CDS-L-elsbetiae_contig1705:2771..3293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1705 2772..3293 +
1691683052.5386047-CDS-L-elsbetiae_contig1705:2771..32931691683052.5386047-CDS-L-elsbetiae_contig1705:2771..3293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1705 2772..3293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.661146-UTR-L-elsbetiae_contig1705:3293..34291622815710.661146-UTR-L-elsbetiae_contig1705:3293..3429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1705 3294..3429 +
1691683052.5483754-UTR-L-elsbetiae_contig1705:3293..34291691683052.5483754-UTR-L-elsbetiae_contig1705:3293..3429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1705 3294..3429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1705.4724.1prot_L-elsbetiae_contig1705.4724.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1705 2772..3293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1705.4724.1

>prot_L-elsbetiae_contig1705.4724.1 ID=prot_L-elsbetiae_contig1705.4724.1|Name=mRNA_L-elsbetiae_contig1705.4724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
GVGIGLELGRGRGGGRRRHVVPPGPLGPPVPGVGERSGLPSPGGKAILAV
VFLLVLVPVVVVVVVVVLGGRRRGNVVAAERHGAHRRGGRRDAPHGAGAT
SAGGGSVRNAAAAAVLGLGDVVTVGSRRRNLFNLFLLLLLFHRGCPRVAV
AAARQSVPGLLSGAVRVATVFRR*
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mRNA from alignment at L-elsbetiae_contig1705:2772..3429+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1705.4724.1 ID=mRNA_L-elsbetiae_contig1705.4724.1|Name=mRNA_L-elsbetiae_contig1705.4724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=658bp|location=Sequence derived from alignment at L-elsbetiae_contig1705:2772..3429+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCGGAATCGGTCTCGAACTCGGAAGAGGAAGAGGAGGAGGACGACG
ACGACACGTCGTACCGCCCGGCCCCCTCGGCCCCCCGGTACCCGGCGTAG
GGGAGCGGAGCGGGCTGCCCTCGCCCGGGGGCAAAGCCATCCTCGCCGTT
GTCTTCCTCCTCGTCCTCGTCCCCGTCGTCGTCGTCGTCGTCGTAGTCGT
GTTGGGAGGACGAAGACGAGGAAACGTCGTAGCGGCCGAGCGGCACGGAG
CTCACCGGCGAGGGGGCCGGCGTGACGCCCCCCACGGCGCCGGCGCGACC
AGCGCCGGCGGTGGCAGTGTCAGAAACGCCGCCGCTGCTGCTGTGCTCGG
ACTCGGAGACGTCGTAACGGTTGGGTCGCGGCGAAGAAATCTCTTCAACC
TCTTTCTCCTCCTCCTCCTCTTCCATCGGGGTTGCCCCCGTGTGGCCGTT
GCCGCCGCTCGCCAGAGCGTCCCGGGATTGCTCAGCGGCGCCGTCAGGGT
CGCCACCGTCTTCCGACGATGACACGTCGTAACGGGCGCGCGGCGACCCT
TCCTCCCCGGCCAGCTGCTGCGGAAGGTGGTCTTCTGGCGGAGGTGTGCC
CGGACCTCGGTCCTGGCCCCCGGCGTCGCCGTCGCGGTGGGTTCGGCCCA
CTGCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1705:2772..3429+

>mRNA_L-elsbetiae_contig1705.4724.1 ID=mRNA_L-elsbetiae_contig1705.4724.1|Name=mRNA_L-elsbetiae_contig1705.4724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig1705:2772..3429+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCGGAATCGGTCTCGAACTCGGAAGAGGAAGAGGAGGAGGACGACG
ACGACACGTCGTACCGCCCGGCCCCCTCGGCCCCCCGGTACCCGGCGTAG
GGGAGCGGAGCGGGCTGCCCTCGCCCGGGGGCAAAGCCATCCTCGCCGTT
GTCTTCCTCCTCGTCCTCGTCCCCGTCGTCGTCGTCGTCGTCGTAGTCGT
GTTGGGAGGACGAAGACGAGGAAACGTCGTAGCGGCCGAGCGGCACGGAG
CTCACCGGCGAGGGGGCCGGCGTGACGCCCCCCACGGCGCCGGCGCGACC
AGCGCCGGCGGTGGCAGTGTCAGAAACGCCGCCGCTGCTGCTGTGCTCGG
ACTCGGAGACGTCGTAACGGTTGGGTCGCGGCGAAGAAATCTCTTCAACC
TCTTTCTCCTCCTCCTCCTCTTCCATCGGGGTTGCCCCCGTGTGGCCGTT
GCCGCCGCTCGCCAGAGCGTCCCGGGATTGCTCAGCGGCGCCGTCAGGGT
CGCCACCGTCTTCCGACGATGAGGTGTCGGAATCGGTCTCGAACTCGGAA
GAGGAAGAGGAGGAGGACGACGACGACACGTCGTACCGCCCGGCCCCCTC
GGCCCCCCGGTACCCGGCGTAGGGGAGCGGAGCGGGCTGCCCTCGCCCGG
GGGCAAAGCCATCCTCGCCGTTGTCTTCCTCCTCGTCCTCGTCCCCGTCG
TCGTCGTCGTCGTCGTAGTCGTGTTGGGAGGACGAAGACGAGGAAACGTC
GTAGCGGCCGAGCGGCACGGAGCTCACCGGCGAGGGGGCCGGCGTGACGC
CCCCCACGGCGCCGGCGCGACCAGCGCCGGCGGTGGCAGTGTCAGAAACG
CCGCCGCTGCTGCTGTGCTCGGACTCGGAGACGTCGTAACGGTTGGGTCG
CGGCGAAGAAATCTCTTCAACCTCTTTCTCCTCCTCCTCCTCTTCCATCG
GGGTTGCCCCCGTGTGGCCGTTGCCGCCGCTCGCCAGAGCGTCCCGGGAT
TGCTCAGCGGCGCCGTCAGGGTCGCCACCGTCTTCCGACGATGA
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