mRNA_L-elsbetiae_contig1704.4721.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1704.4721.1
Unique NamemRNA_L-elsbetiae_contig1704.4721.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1704.4721.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 7.530e-15
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 2 
Query:  290 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHNSTQAAGAAG---DGEKA 445
            MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDH++  ++GAA    DGEKA
Sbjct:    1 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHSTGSSSGAAATTADGEKA 55
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BLAST of mRNA_L-elsbetiae_contig1704.4721.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.000e-14
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 2 
Query:  290 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHNSTQAAGAA 427
            MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDH++  ++GAA
Sbjct:    1 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHSTGSSSGAA 46
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1704.4721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSC3_ECTSI7.530e-1581.82Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6H5LBT5_9PHAE4.000e-1486.96Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1704contigL-elsbetiae_contig1704:22130..22574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue7.5e-13
Seed eggNOG ortholog2880.D8LSC3
Preferred nameCOG6
KEGG koko:K20293
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG3758@1,KOG3758@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size447
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.4077024-UTR-L-elsbetiae_contig1704:22129..224181622815710.4077024-UTR-L-elsbetiae_contig1704:22129..22418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1704 22130..22418 +
1691683052.393737-UTR-L-elsbetiae_contig1704:22129..224181691683052.393737-UTR-L-elsbetiae_contig1704:22129..22418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1704 22130..22418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.418662-CDS-L-elsbetiae_contig1704:22418..225741622815710.418662-CDS-L-elsbetiae_contig1704:22418..22574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1704 22419..22574 +
1691683052.4056177-CDS-L-elsbetiae_contig1704:22418..225741691683052.4056177-CDS-L-elsbetiae_contig1704:22418..22574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1704 22419..22574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1704.4721.1prot_L-elsbetiae_contig1704.4721.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1704 22419..22574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1704.4721.1

>prot_L-elsbetiae_contig1704.4721.1 ID=prot_L-elsbetiae_contig1704.4721.1|Name=mRNA_L-elsbetiae_contig1704.4721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHNSTQAAGAAGDGE
KA
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mRNA from alignment at L-elsbetiae_contig1704:22130..22574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1704.4721.1 ID=mRNA_L-elsbetiae_contig1704.4721.1|Name=mRNA_L-elsbetiae_contig1704.4721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=445bp|location=Sequence derived from alignment at L-elsbetiae_contig1704:22130..22574+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGTGTGCTGCTGTGGTGGTGTGCATGGCGATGTGCTGAGGAAATCG
TGGTGTGAAAGTTTTTGATCTCGTGCTCCCCGGCTACAAGTGTGATCGTG
GGAAGCCGAATTCAAGAAAAACACACTTTGTTCTTGCGCACGCACCATCA
GCCACGGTGTGTTCCTGGGGGTTGTCCGAGCCGTGTTGTCCGCTGCGCAG
TCCTTCCTCCACAGCCACCTTCCTTTTTTTTACAAGGATATATATAACTG
CTGTACTGGCTACCTGCTGGTCTTCCTGCCGCTGCAACCATGGCGTCACG
AGTACTGGACAAGAAGCTCAAGAAGGTGCTGGACATGCGGACAGATACAC
CCGCGCTGCTGGAGTCTCTCGAGGCGATCAGCACGCTCTTCAGCGATCAC
AACAGCACCCAGGCTGCTGGTGCTGCGGGCGACGGCGAGAAGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1704:22130..22574+

>mRNA_L-elsbetiae_contig1704.4721.1 ID=mRNA_L-elsbetiae_contig1704.4721.1|Name=mRNA_L-elsbetiae_contig1704.4721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig1704:22130..22574+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCACGAGTACTGGACAAGAAGCTCAAGAAGGTGCTGGACATGCG
GACAGATACACCCGCGCTGCTGGAGTCTCTCGAGGCGATCAGCACGCTCT
TCAGCGATCACAACAGCACCCAGGCTGCTGGTGCTGCGGGCGACGGCGAG
AAGGCAATGGCGTCACGAGTACTGGACAAGAAGCTCAAGAAGGTGCTGGA
CATGCGGACAGATACACCCGCGCTGCTGGAGTCTCTCGAGGCGATCAGCA
CGCTCTTCAGCGATCACAACAGCACCCAGGCTGCTGGTGCTGCGGGCGAC
GGCGAGAAGGCA
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