mRNA_L-elsbetiae_contig1704.4719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1704.4719.1
Unique NamemRNA_L-elsbetiae_contig1704.4719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1704.4719.1 vs. uniprot
Match: D8LSD0_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 5.420e-20
Identity = 82/208 (39.42%), Postives = 97/208 (46.63%), Query Frame = 1 
Query:   79 PAGRPSSPRARAGAERRGSGCDDMPLTGIRRRGSGSGINTEIAGDGARWATDKHLNGVRPGNQSGGGGSEARRXXXXXXXLXXXXXXGGEAGTVAGHGIRWASSKPTIKTRPNAMRPSDSYRDRPG-----IPKAIASDGLAAENEDAASKGSHSFSLADSRHSSARERPHLATTKVGHGDQERGGPASPTRALARATARRMSALGSK 687
            P  RP+SPRAR GA RRGSGCD +   G      G          GARWA  K L+G      +G G S+                     G V   G+RWASSKP I TR     P+  YR+R G     +P AIASDG A E+E          S A++            T +     QERGG  SPTR  ARATARR+SALG+K
Sbjct: 1548 PTRRPASPRARVGAVRRGSGCDGLGFGGXXXXXXG----------GARWAIGKPLSGTGRRGSAGTGDSDT--------------------GKVLADGVRWASSKPAINTRSITTAPAQPYRERAGSADGRVPIAIASDGQAEESESGXXXXPPPRSRAEA----------FTTARSARSLQERGGATSPTRGFARATARRLSALGAK 1715
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BLAST of mRNA_L-elsbetiae_contig1704.4719.1 vs. uniprot
Match: A0A6H5L078_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L078_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.290e-19
Identity = 83/208 (39.90%), Postives = 98/208 (47.12%), Query Frame = 1 
Query:   79 PAGRPSSPRARAGAERRGSGCDDMPLTGIRRRGSGSGINTEIAGDGARWATDKHLNGVRPGNQSGGGGSEARRXXXXXXXLXXXXXXGGEAGTVAGHGIRWASSKPTIKTRPNAMRPSDSYRDRPG-----IPKAIASDGLAAENEDAASKGSHSFSLADSRHSSARERPHLATTKVGHGDQERGGPASPTRALARATARRMSALGSK 687
            P  RP+SPRAR GA RRGSGCD          G G G        GARWA  K L G   G +  GG  ++                  + G V   G+RWASSKP I TR     P+  YR+R G     +P AIASDG A E+           S A++            T +     QERGG ASPTR  ARATARR+SALG+K
Sbjct: 1681 PTRRPASPRARVGAVRRGSGCD----------GLGFGDXXXXXXGGARWAIGKPLGGT--GRRGSGGTDDS------------------DTGKVFADGVRWASSKPAINTRSTTTAPAQPYRERAGSADGRVPIAIASDGQAEESGXXXXXXXXXRSRAEA----------FTTARSARSLQERGGAASPTRGFARATARRLSALGAK 1848
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1704.4719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSD0_ECTSI5.420e-2039.42Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L078_9PHAE1.290e-1939.90Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1704contigL-elsbetiae_contig1704:11288..12881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue6.5e-15
Seed eggNOG ortholog2880.D8LSD0
Preferred namekinesin-F
KEGG koko:K10397,ko:K10400
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size1594
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1704.4719.1prot_L-elsbetiae_contig1704.4719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1704 11435..12250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.1894252-UTR-L-elsbetiae_contig1704:11287..114341622815710.1894252-UTR-L-elsbetiae_contig1704:11287..11434Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1704 11288..11434 +
1691683052.2401528-UTR-L-elsbetiae_contig1704:11287..114341691683052.2401528-UTR-L-elsbetiae_contig1704:11287..11434Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1704 11288..11434 +
1622815710.2136366-UTR-L-elsbetiae_contig1704:12250..128811622815710.2136366-UTR-L-elsbetiae_contig1704:12250..12881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1704 12251..12881 +
1691683052.2678077-UTR-L-elsbetiae_contig1704:12250..128811691683052.2678077-UTR-L-elsbetiae_contig1704:12250..12881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1704 12251..12881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.200589-CDS-L-elsbetiae_contig1704:11434..122501622815710.200589-CDS-L-elsbetiae_contig1704:11434..12250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1704 11435..12250 +
1691683052.2527537-CDS-L-elsbetiae_contig1704:11434..122501691683052.2527537-CDS-L-elsbetiae_contig1704:11434..12250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1704 11435..12250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1704.4719.1

>prot_L-elsbetiae_contig1704.4719.1 ID=prot_L-elsbetiae_contig1704.4719.1|Name=mRNA_L-elsbetiae_contig1704.4719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
MPLTGIRRRGSGSGINTEIAGDGARWATDKHLNGVRPGNQSGGGGSEARR
SSGGQRSLSRGSSGGGEAGTVAGHGIRWASSKPTIKTRPNAMRPSDSYRD
RPGIPKAIASDGLAAENEDAASKGSHSFSLADSRHSSARERPHLATTKVG
HGDQERGGPASPTRALARATARRMSALGSKAVGGMSLGGTNIGGNSSGPS
ATTRPLLPPPPTVSGAFTGSGSPGAKGEGPPPPPSREQHRRMSAAPLTEQ
HLQGVSDSHRGYAAPAAVRAA*
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mRNA from alignment at L-elsbetiae_contig1704:11288..12881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1704.4719.1 ID=mRNA_L-elsbetiae_contig1704.4719.1|Name=mRNA_L-elsbetiae_contig1704.4719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1594bp|location=Sequence derived from alignment at L-elsbetiae_contig1704:11288..12881+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACCGGTATTCGCAGGCGCGGGAGCGGTAGTGGTGTTGATGCGGAGAA
CACTCGCCCATCCGCCGCCGATCGTTACCCGGCAGGGCGGCCCTCGAGTC
CCCGGGCACGTGCCGGGGCAGAACGGCGCGGGAGTGGTTGCGACGATATG
CCCCTCACCGGTATTCGCAGGCGCGGGAGCGGTAGTGGTATCAATACGGA
GATCGCAGGCGATGGTGCCCGGTGGGCGACAGATAAGCACCTCAACGGTG
TGAGGCCAGGAAACCAAAGCGGCGGTGGAGGCAGTGAGGCGAGGCGCAGC
AGTGGTGGCCAACGTAGTCTCAGCCGCGGAAGCAGTGGCGGTGGCGAAGC
GGGCACCGTAGCGGGCCACGGCATCCGTTGGGCGAGCAGTAAGCCCACCA
TCAAGACTCGACCAAATGCCATGCGCCCGTCCGACTCCTACCGTGACCGC
CCTGGTATCCCCAAGGCCATCGCTTCGGATGGGCTAGCCGCGGAGAACGA
AGATGCCGCCTCAAAGGGTAGCCACAGCTTTAGCCTTGCCGACTCACGCC
ACAGCTCAGCCCGAGAAAGGCCGCACCTCGCCACCACCAAAGTGGGGCAC
GGGGATCAGGAGCGGGGAGGACCAGCATCACCGACCAGGGCACTTGCACG
TGCGACGGCTAGGCGCATGTCGGCGCTGGGGTCAAAGGCGGTCGGAGGCA
TGAGCTTGGGCGGCACGAATATCGGTGGCAACAGCTCTGGTCCCAGCGCA
ACTACCCGGCCTCTTCTTCCTCCTCCACCTACCGTCTCCGGCGCCTTCAC
CGGCAGCGGCTCCCCAGGTGCCAAAGGGGAGGGGCCACCGCCCCCGCCGT
CGCGGGAGCAACACCGCCGGATGTCGGCTGCTCCTCTCACCGAGCAGCAT
CTCCAAGGAGTGAGTGACTCCCACAGGGGGTATGCCGCGCCGGCGGCCGT
TCGCGCAGCATAACGTTGCCGGAATTTTCGGCAGCTCAGACTTCATTTTC
AGCCTCGATAGGGCAAGTTGCTTCCGCCGCTGTTGCTGCTCGCCCCTACG
ACAAACGGCGCGCTTGGGGCGACGACGGTGTCTCGTATGTACTACCGAAT
GTGGCGGGGTTTTGAGTGGCTCTTCTGAGTGATGCACAACGATGCACAAA
ACGCAACACAACAGTGAGAAGTGGTAGTGTAGGTGGTCTACTTGTACATA
TAAATTATCTAGAGAGTATCTAATTATCTAGAGAGAGAGGGGGGAGAGAG
AGAGAACACAAGGAAAAACTTGCTTGGCTGATGAAGCCGGCGTACATAGC
TTTACGAGGCACCGTTTGTGGTGCCGATCGGTTCGTTGGCAGTGCTTGTT
GTGCGTTGTGACATTCGCCTCCAAAGCTCCAAGTTCAGCCACATATCTAT
GTACATATCTAGATAGGATTCCGCGTCCCTGCTTACATACAGCTGTATTG
CTGAAAAGTTGGCCGCAGAAGTAGAAAAGGCGCTCTGCGCCAATGCAGAG
AATAGGATATATTTTGTAGTTTCAGCTTTCCGAGAGGGTTTTATCCACAC
ACGCAGGAATCAGTTTGCTTTTGTTTGCTTCAGGCCTTTCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1704:11288..12881+

>mRNA_L-elsbetiae_contig1704.4719.1 ID=mRNA_L-elsbetiae_contig1704.4719.1|Name=mRNA_L-elsbetiae_contig1704.4719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig1704:11288..12881+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCTCACCGGTATTCGCAGGCGCGGGAGCGGTAGTGGTATCAATAC
GGAGATCGCAGGCGATGGTGCCCGGTGGGCGACAGATAAGCACCTCAACG
GTGTGAGGCCAGGAAACCAAAGCGGCGGTGGAGGCAGTGAGGCGAGGCGC
AGCAGTGGTGGCCAACGTAGTCTCAGCCGCGGAAGCAGTGGCGGTGGCGA
AGCGGGCACCGTAGCGGGCCACGGCATCCGTTGGGCGAGCAGTAAGCCCA
CCATCAAGACTCGACCAAATGCCATGCGCCCGTCCGACTCCTACCGTGAC
CGCCCTGGTATCCCCAAGGCCATCGCTTCGGATGGGCTAGCCGCGGAGAA
CGAAGATGCCGCCTCAAAGGGTAGCCACAGCTTTAGCCTTGCCGACTCAC
GCCACAGCTCAGCCCGAGAAAGGCCGCACCTCGCCACCACCAAAGTGGGG
CACGGGGATCAGGAGCGGGGAGGACCAGCATCACCGACCAGGGCACTTGC
ACGTGCGACGGCTAGGCGCATGTCGGCGCTGGGGTCAAAGGCGGTCGGAG
GCATGAGCTTGGGCGGCACGAATATCGGTGGCAACAGCTCTGGTCCCAGC
GCAACTACCCGGCCTCTTCTTCCTCCTCCACCTACCGTCTCCGGCGCCTT
CACCGGCAGCGGCTCCCCAGGTGCCAAAGGGGAGGGGCCACCGCCCCCGC
CGTCGCGGGAGCAACACCGCCGGATGTCGGCTGCTCCTCTCACCGAGCAG
CATCTCCAAGGAGTGAGTGACTCCCACAGGGGGTATGCCGCGCCGGCGGC
CGTTCGCGCAGCATAAATGCCCCTCACCGGTATTCGCAGGCGCGGGAGCG
GTAGTGGTATCAATACGGAGATCGCAGGCGATGGTGCCCGGTGGGCGACA
GATAAGCACCTCAACGGTGTGAGGCCAGGAAACCAAAGCGGCGGTGGAGG
CAGTGAGGCGAGGCGCAGCAGTGGTGGCCAACGTAGTCTCAGCCGCGGAA
GCAGTGGCGGTGGCGAAGCGGGCACCGTAGCGGGCCACGGCATCCGTTGG
GCGAGCAGTAAGCCCACCATCAAGACTCGACCAAATGCCATGCGCCCGTC
CGACTCCTACCGTGACCGCCCTGGTATCCCCAAGGCCATCGCTTCGGATG
GGCTAGCCGCGGAGAACGAAGATGCCGCCTCAAAGGGTAGCCACAGCTTT
AGCCTTGCCGACTCACGCCACAGCTCAGCCCGAGAAAGGCCGCACCTCGC
CACCACCAAAGTGGGGCACGGGGATCAGGAGCGGGGAGGACCAGCATCAC
CGACCAGGGCACTTGCACGTGCGACGGCTAGGCGCATGTCGGCGCTGGGG
TCAAAGGCGGTCGGAGGCATGAGCTTGGGCGGCACGAATATCGGTGGCAA
CAGCTCTGGTCCCAGCGCAACTACCCGGCCTCTTCTTCCTCCTCCACCTA
CCGTCTCCGGCGCCTTCACCGGCAGCGGCTCCCCAGGTGCCAAAGGGGAG
GGGCCACCGCCCCCGCCGTCGCGGGAGCAACACCGCCGGATGTCGGCTGC
TCCTCTCACCGAGCAGCATCTCCAAGGAGTGAGTGACTCCCACAGGGGGT
ATGCCGCGCCGGCGGCCGTTCGCGCAGCATAA
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