mRNA_L-elsbetiae_contig17033.4715.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17033.4715.1
Unique NamemRNA_L-elsbetiae_contig17033.4715.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17033.4715.1 vs. uniprot
Match: D7FTZ3_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTZ3_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 3.630e-72
Identity = 171/325 (52.62%), Postives = 189/325 (58.15%), Query Frame = 1 
Query:    1 EAGPPAKPQLGTTYAKRPDDPPLDPDIGAPWNTWGPGSASKYNVRTRGYGRSKLKAPSAPELYDLVSIDAYRSPAGRICGLYPMLTPPA-----CIAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGHPDIPLVLLVNCQLPDVPTPFSGQGDGPTVHVIFTFRATRRLCRYAARVWADENSAAAAAASTASPGAFVNSGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDXXXXXXDDGVVPESVRLLVEWMRRAEDDGGFRGRFKAIGDIVNSDE 960
            E GPPAKPQLGTTYAKRPD  PLDP    PWN+W  GS S++NVRT+GYGR+K+KAPSAPELY L+SIDAYRSPAGRICG+YP+ TPPA       A                                XXXXXXXX      TGHPDIP VL+VN QLPD+PTPF+ QGDGPT+H+I TF ATRRLCRYAARVWA+E SAA               G+                           XXXXXXXXXXXX                           +D  VPESVRLLVEWMRRA+DDG FRGRFKAIGDIVN DE
Sbjct:  795 EQGPPAKPQLGTTYAKRPDSSPLDPGAPEPWNSWTVGSGSQFNVRTKGYGRTKVKAPSAPELYQLISIDAYRSPAGRICGVYPLFTPPAFPTAATPAGGGSATDSVEGARRTGTGDEDPPLSQGPGGCGXXXXXXXXSGTGDDTGHPDIPPVLVVNFQLPDLPTPFTVQGDGPTLHIILTFHATRRLCRYAARVWAEERSAA----XXXXXXXXXEEGQAGSPEATPAAASETAAVEPLGSGAPSGXXXXXXXXXXXXGGPVPHGRSSHGAPPAEGGAGLGEGDAED--VPESVRLLVEWMRRAQDDGNFRGRFKAIGDIVNMDE 1113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17033.4715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTZ3_ECTSI3.630e-7252.62EDR2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17033contigL-elsbetiae_contig17033:1326..3107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue8.8e-67
Seed eggNOG ortholog2880.D7FTZ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28UHR@1,2R18H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size990
Cds size990
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17033.4715.1prot_L-elsbetiae_contig17033.4715.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17033 1326..3107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.7946045-CDS-L-elsbetiae_contig17033:1325..15581622815709.7946045-CDS-L-elsbetiae_contig17033:1325..1558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 1326..1558 -
1691683051.9519942-CDS-L-elsbetiae_contig17033:1325..15581691683051.9519942-CDS-L-elsbetiae_contig17033:1325..1558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 1326..1558 -
1622815709.8076313-CDS-L-elsbetiae_contig17033:1594..19481622815709.8076313-CDS-L-elsbetiae_contig17033:1594..1948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 1595..1948 -
1691683051.9630377-CDS-L-elsbetiae_contig17033:1594..19481691683051.9630377-CDS-L-elsbetiae_contig17033:1594..1948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 1595..1948 -
1622815709.8196514-CDS-L-elsbetiae_contig17033:2071..23321622815709.8196514-CDS-L-elsbetiae_contig17033:2071..2332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 2072..2332 -
1691683051.9724622-CDS-L-elsbetiae_contig17033:2071..23321691683051.9724622-CDS-L-elsbetiae_contig17033:2071..2332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 2072..2332 -
1622815709.8290467-CDS-L-elsbetiae_contig17033:2965..31071622815709.8290467-CDS-L-elsbetiae_contig17033:2965..3107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 2966..3107 -
1691683051.9826875-CDS-L-elsbetiae_contig17033:2965..31071691683051.9826875-CDS-L-elsbetiae_contig17033:2965..3107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 2966..3107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17033.4715.1

>prot_L-elsbetiae_contig17033.4715.1 ID=prot_L-elsbetiae_contig17033.4715.1|Name=mRNA_L-elsbetiae_contig17033.4715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=330bp
EAGPPAKPQLGTTYAKRPDDPPLDPDIGAPWNTWGPGSASKYNVRTRGYG
RSKLKAPSAPELYDLVSIDAYRSPAGRICGLYPMLTPPACIAADAAAAAA
AAAAAKLSKRAAEADASGPPADPMGPRAAAARAAGGGGTGHPDIPLVLLV
NCQLPDVPTPFSGQGDGPTVHVIFTFRATRRLCRYAARVWADENSAAAAA
ASTASPGAFVNSGEQATAASETAPSGAARSGGPAAAAAAASGVSGDAAAS
GGGATAVAGEQQASRSAGRGAGEDGGGGEEDDGVVPESVRLLVEWMRRAE
DDGGFRGRFKAIGDIVNSDEASEEFFFFS*
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mRNA from alignment at L-elsbetiae_contig17033:1326..3107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17033.4715.1 ID=mRNA_L-elsbetiae_contig17033.4715.1|Name=mRNA_L-elsbetiae_contig17033.4715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig17033:1326..3107- (Laminarionema elsbetiae ELsaHSoW15)
GAAGCAGGACCGCCTGCGAAGCCGCAGCTCGGGACGACGTACGCGAAGCG
GCCGGACGACCCGCCGCTGGACCCGGATATCGGGGCCCCGTGGAACACCT
GGGGGCCCGGCAGCGCGTCAAAATACAACGTTAGGACAAGAGGTGAAACG
ACAACAACAACAACAACAACAACAACAACAACAACTTTTTGTTTTTCGTT
CACACAAAAATCATTGAACACGAAAAACAAAGCAAAGCAACACAAAACAA
AGGTGCGCCGCCCGCGCTACTATACTACTGCTTTTGCTGTCTGCGGGGCA
ATGAACGACACACGTTCGGTTGTTTTTGCGGTCAAGCGCCTTCTTTTTGT
GCGGGCGGGGCTGATGGGCTGACTGGCATGACCCGTCGGGTCTCGCTCGC
ACTTGGCATTTGTGTCATCGGCGGACGGCGATGAGCACCCTGAGCGGGGG
TGTGGCCTCTCTTCTTTTCCTTCCTCCCTGCCTGCCTGCCTGCCTGCCTT
TTCGATGTCTGTGTTCCGTTTCGTGAAACCTTGTTGTTATTGTTGTGGTG
TTGGTGCATTTCTTTTTCGGGGTTGGCATGTGCGTTCCCCTCCGAACTGT
TGTCCCCGTCGAAAGGCAAACGCGTCTGTTCAACCCATCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCTATCCCTCTCTTCCCCCCTCTCTGCCA
CTCTCCCTCGCTCTCTCTCGCTCTCTCTCCCTCCCTCTCCCCCCCCCTCT
CTCTCCCTCTCTTCGAAAAAAAAAGGATACGGTCGCAGCAAACTCAAGGC
CCCCTCGGCGCCGGAGTTGTACGACCTCGTCAGCATCGACGCCTACCGGA
GCCCCGCCGGGAGGATCTGCGGCTTGTACCCCATGCTCACCCCTCCCGCC
TGCATCGCGGCAGACGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTGCAAA
ACTAAGCAAGCGGGCGGCGGAAGCCGACGCCAGCGGCCCGCCTGCGGACC
CAATGGGGCCGAGAGCTGCAGCGGCGAGAGCGGCCGGTGAAGCGGCAGAG
GCGGCGGAGGAAGGCGCCGCGGCCGCCGGCGGTAACGCCAACCCCGCGAC
GGGGGCGGCCGATCATCCGGCCAGGTTTTCTGAGGAGGACGCCGCACCAT
CAACACAAGGCGGCGGCGGCACCGGACACCCCGACATCCCCCTCGTGCTG
CTGGTGAACTGCCAGCTACCGGACGTACCGACGCCGTTCTCGGGGCAGGG
CGATGGGCCGACGGTGCACGTCATATTCACCTTCCGCGCAACCCGCCGCC
TGTGCCGGTACGCCGCGCGGGTCTGGGCCGACGAGAACAGCGCAGCCGCC
GCCGCCGCCTCCACCGCCTCCCCCGGCGCTTTTGTTAACAGCGGCGAGCA
GGCGACGGCCGCTTCCGAGACGGCACCATCGGGAGCAGCGCGTTCCGGAG
GTCCCGCCGCCGCCGCCGCCGCCGCCAGCGGTGTAAGCGGCGATGCTGCG
GCGAGCGGCGGCGGTGGCGGCTCGTTGCGGCGGGGTGGCGCGCGCGAAGG
CGCAACGGCGGTCGCCGGGGAGCAACAGGCATCGAGAAGCGCTGGTCGCG
GCGCAGGAGAGGACGGCGGGGGGGGGGAAGAAGACGACGGGGTTGTGCCC
GAGTCAGTCCGGCTGCTGGTGGAGTGGATGCGGCGAGCGGAGGACGACGG
CGGCTTTCGGGGGAGGTTCAAGGCTATCGGGGACATCGTGAACTCGGATG
AGGCGAGTGAGGAGTTTTTTTTTTTTTCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17033:1326..3107-

>mRNA_L-elsbetiae_contig17033.4715.1 ID=mRNA_L-elsbetiae_contig17033.4715.1|Name=mRNA_L-elsbetiae_contig17033.4715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1980bp|location=Sequence derived from alignment at L-elsbetiae_contig17033:1326..3107- (Laminarionema elsbetiae ELsaHSoW15)
GAAGCAGGACCGCCTGCGAAGCCGCAGCTCGGGACGACGTACGCGAAGCG
GCCGGACGACCCGCCGCTGGACCCGGATATCGGGGCCCCGTGGAACACCT
GGGGGCCCGGCAGCGCGTCAAAATACAACGTTAGGACAAGAGGAAGCAGG
ACCGCCTGCGAAGCCGCAGCTCGGGACGACGTACGCGAAGCGGCCGGACG
ACCCGCCGCTGGACCCGGATATCGGGGCCCCGTGGAACACCTGGGGGCCC
GGCAGCGCGTCAAAATACAACGTTAGGACAAGAGGATACGGTCGCAGCAA
ACTCAAGGCCCCCTCGGCGCCGGAGTTGTACGACCTCGTCAGCATCGACG
CCTACCGGAGCCCCGCCGGGAGGATCTGCGGCTTGTACCCCATGCTCACC
CCTCCCGCCTGCATCGCGGCAGACGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCTGCAAAACTAAGCAAGCGGGCGGCGGAAGCCGACGCCAGCGGCCCGC
CTGCGGACCCAATGGGGCCGAGAGCTGCAGCGGCGAGAGCGGCCGGATAC
GGTCGCAGCAAACTCAAGGCCCCCTCGGCGCCGGAGTTGTACGACCTCGT
CAGCATCGACGCCTACCGGAGCCCCGCCGGGAGGATCTGCGGCTTGTACC
CCATGCTCACCCCTCCCGCCTGCATCGCGGCAGACGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCTGCAAAACTAAGCAAGCGGGCGGCGGAAGCCGACGC
CAGCGGCCCGCCTGCGGACCCAATGGGGCCGAGAGCTGCAGCGGCGAGAG
CGGCCGGCGGCGGCGGCACCGGACACCCCGACATCCCCCTCGTGCTGCTG
GTGAACTGCCAGCTACCGGACGTACCGACGCCGTTCTCGGGGCAGGGCGA
TGGGCCGACGGTGCACGTCATATTCACCTTCCGCGCAACCCGCCGCCTGT
GCCGGTACGCCGCGCGGGTCTGGGCCGACGAGAACAGCGCAGCCGCCGCC
GCCGCCTCCACCGCCTCCCCCGGCGCTTTTGTTAACAGCGGCGAGCAGGC
GACGGCCGCTTCCGAGACGGCACCATCGGGAGCAGCGCGTTCCGGAGGTC
CCGCCGCCGCCGCCGCCGCCGCCAGCGGTGTAAGCGGCGATGCTGCGGCG
AGCGGCGGCGGCGGCGGCGGCACCGGACACCCCGACATCCCCCTCGTGCT
GCTGGTGAACTGCCAGCTACCGGACGTACCGACGCCGTTCTCGGGGCAGG
GCGATGGGCCGACGGTGCACGTCATATTCACCTTCCGCGCAACCCGCCGC
CTGTGCCGGTACGCCGCGCGGGTCTGGGCCGACGAGAACAGCGCAGCCGC
CGCCGCCGCCTCCACCGCCTCCCCCGGCGCTTTTGTTAACAGCGGCGAGC
AGGCGACGGCCGCTTCCGAGACGGCACCATCGGGAGCAGCGCGTTCCGGA
GGTCCCGCCGCCGCCGCCGCCGCCGCCAGCGGTGTAAGCGGCGATGCTGC
GGCGAGCGGCGGCGGCGCAACGGCGGTCGCCGGGGAGCAACAGGCATCGA
GAAGCGCTGGTCGCGGCGCAGGAGAGGACGGCGGGGGGGGGGAAGAAGAC
GACGGGGTTGTGCCCGAGTCAGTCCGGCTGCTGGTGGAGTGGATGCGGCG
AGCGGAGGACGACGGCGGCTTTCGGGGGAGGTTCAAGGCTATCGGGGACA
TCGTGAACTCGGATGAGGCGAGTGAGGAGTTTTTTTTTTTTTCGTGAGCG
CAACGGCGGTCGCCGGGGAGCAACAGGCATCGAGAAGCGCTGGTCGCGGC
GCAGGAGAGGACGGCGGGGGGGGGGAAGAAGACGACGGGGTTGTGCCCGA
GTCAGTCCGGCTGCTGGTGGAGTGGATGCGGCGAGCGGAGGACGACGGCG
GCTTTCGGGGGAGGTTCAAGGCTATCGGGGACATCGTGAACTCGGATGAG
GCGAGTGAGGAGTTTTTTTTTTTTTCGTGA
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