mRNA_L-elsbetiae_contig17025.4706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17025.4706.1
Unique NamemRNA_L-elsbetiae_contig17025.4706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17025.4706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17025contigL-elsbetiae_contig17025:942..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.1345754-CDS-L-elsbetiae_contig17025:942..10301622815709.1345754-CDS-L-elsbetiae_contig17025:942..1030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17025 943..1030 -
1691683051.6102476-CDS-L-elsbetiae_contig17025:942..10301691683051.6102476-CDS-L-elsbetiae_contig17025:942..1030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17025 943..1030 -
1622815709.1461382-CDS-L-elsbetiae_contig17025:1039..11821622815709.1461382-CDS-L-elsbetiae_contig17025:1039..1182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17025 1040..1182 -
1691683051.6194522-CDS-L-elsbetiae_contig17025:1039..11821691683051.6194522-CDS-L-elsbetiae_contig17025:1039..1182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17025 1040..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17025.4706.1prot_L-elsbetiae_contig17025.4706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17025 943..1182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17025.4706.1

>prot_L-elsbetiae_contig17025.4706.1 ID=prot_L-elsbetiae_contig17025.4706.1|Name=mRNA_L-elsbetiae_contig17025.4706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
HNGCDGFWCAGGIRRWSRSSGSTRSHQGTQSPGDRVVHSGRRRRRRRRRC
IGRHHRSGRCCRLSCRFGKATFVAGSP
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mRNA from alignment at L-elsbetiae_contig17025:942..1182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17025.4706.1 ID=mRNA_L-elsbetiae_contig17025.4706.1|Name=mRNA_L-elsbetiae_contig17025.4706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=241bp|location=Sequence derived from alignment at L-elsbetiae_contig17025:942..1182- (Laminarionema elsbetiae ELsaHSoW15)
CACAACGGGTGCGACGGTTTCTGGTGTGCTGGGGGGATCCGCCGCTGGAG
CAGAAGCAGCGGCAGCACGCGAAGCCATCAAGGCACGCAGAGCCCCGGCG
ATCGTGTTGTGCATAGCGGGCGCAGGCGGCGCAGGCGGCGCAGGCGGCGC
AGGCGGTGCATTGGACGCCACCACAGGAGCGGACGGTGCTGCAGATTGAG
CTGCAGGTTCGGCAAAGCGACTTTCGTTGCAGGTTCCCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17025:942..1182-

>mRNA_L-elsbetiae_contig17025.4706.1 ID=mRNA_L-elsbetiae_contig17025.4706.1|Name=mRNA_L-elsbetiae_contig17025.4706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig17025:942..1182- (Laminarionema elsbetiae ELsaHSoW15)
CACAACGGGTGCGACGGTTTCTGGTGTGCTGGGGGGATCCGCCGCTGGAG
CAGAAGCAGCGGCAGCACGCGAAGCCATCAAGGCACGCAGAGCCCCGGCG
ATCGTGTTGTGCATAGCGGGCGCAGGCGGCGCAGGCGGCGCAGCACAACG
GGTGCGACGGTTTCTGGTGTGCTGGGGGGATCCGCCGCTGGAGCAGAAGC
AGCGGCAGCACGCGAAGCCATCAAGGCACGCAGAGCCCCGGCGATCGTGT
TGTGCATAGCGGGCGCAGGCGGCGCAGGCGGCGCAGGCGGTGCATTGGAC
GCCACCACAGGAGCGGACGGTGCTGCAGATTGAGCTGCAGGTTCGGCAAA
GCGACTTTCGTTGCAGGTTCCCCTGCGGTGCATTGGACGCCACCACAGGA
GCGGACGGTGCTGCAGATTGAGCTGCAGGTTCGGCAAAGCGACTTTCGTT
GCAGGTTCCCCT
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