mRNA_L-elsbetiae_contig1701.4693.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1701.4693.1
Unique NamemRNA_L-elsbetiae_contig1701.4693.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 448 bits (1153), Expect = 3.070e-152
Identity = 202/258 (78.29%), Postives = 216/258 (83.72%), Query Frame = 2 
Query:  284 HGFAWADDADVTSYILPLLHHVKNVGRTADGGRYYGNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPC-HNKLRGQYMGTLREPNGPMETNLVKTCDNDDVPDYDFRTCEHNTYMCCWTENDSTGMVDNTDVCRV-------GKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNLVDECDNA 1033
            HGFAWADDAD+ S+ILPL H+V NV RT DGG YYGNVEG P CGCIEDMPVV DA CSKF G+GI PC  N LR QY   L EP G ME NLV+ CDN+DVPDYDFRTC HNTYMCCWTEND  GM DNTDVCRV         TEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGY+GN+ GAPMCGC+E+MP+VSEADCTTYD+EPGREGK T CT+NDLRTRYEEEYPMG+L NLV ECDNA
Sbjct:  228 HGFAWADDADIDSHILPLYHYVTNVNRTDDGG-YYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELDNLVGECDNA 484
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 437 bits (1123), Expect = 4.000e-144
Identity = 196/257 (76.26%), Postives = 211/257 (82.10%), Query Frame = 2 
Query:  284 HGFAWADDADVTSYILPLLHHVKNVGRTADGGRYYGNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPCH-NKLRGQYMGTLREPNGPMETNLVKTCDNDDVPDYDFRTCEHNTYMCCWTENDSTGMVDNTDVCRV-------GKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNLVDECDN 1030
            HGFAWAD AD+ S+ILPL H+V NV RT DGG YYGNVEG P CGCIEDMPVV DA CS+F  +GI PC  N LR  Y   L EP G +E NLV+ CDN+DVPDYDFRTC HNTYMCCWTEND  GM DNTDVCRV         TEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGY+GN+ GAPMCGC+E+MP+VSEADCTTYD+EPGREGK T CT NDLRTRYEEEYPMG+L NLV ECDN
Sbjct:  185 HGFAWADGADIDSHILPLYHYVTNVNRTDDGG-YYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELDNLVGECDN 440
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 417 bits (1071), Expect = 4.810e-140
Identity = 185/258 (71.71%), Postives = 215/258 (83.33%), Query Frame = 2 
Query:  284 HGFAWADDADVTSYILPLLHHVKNVGRTADGGRYYGNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPC-HNKLRGQYMGTLREPNGPMETNLVKTCDNDDVPDYDFRTCEHNTYMCCWTENDSTGMVDNTDVCRV------GKT-EYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNLVDECDNA 1033
            HGFAW + ADV ++ILPL H+VKNVGRT +GG +YGNVEGAP+CGCIE+MP V  +ECS+++ +GI+ C +N L  QY G L EP GPM+ NLV+TCDN+DVPDYD+ +C HNTYMCCWTEND  GM DNTDVCRV      G+T E+PG+SEGEVHCHGFVWPEDATDKYIHLL+QFVQ+FDHRDRRGYYGN+ GAPMCGC+E+MP VSEADCTTYD +P REGK T CT NDLRTRYE EYP G+L NLVD CDNA
Sbjct:  214 HGFAWVEGADVDTHILPLYHYVKNVGRTEEGG-FYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDNEDVPDYDYGSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEYPTGELANLVDTCDNA 470
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 9.530e-122
Identity = 166/257 (64.59%), Postives = 194/257 (75.49%), Query Frame = 2 
Query:  284 HGFAWADDADVTSYILPLLHHVKNVGRTADGGRYYGNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPC-HNKLRGQYMGTLREPNGPMETNLVKTCDNDDVPDYDFRTCEHNTYMCCWTENDSTGMVDNTDVCRV------GKT-EYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNLVDECDN 1030
            HGF WAD ADV + ILPL H V N GRT +GG YYGNVEGAPQCGC+E+MPVV  +ECS+F GDGI  C  + L   Y+  + EPNGP+E NLV+ CDN DVPD+DFR C+ +TYMCCWTEND+ G++DNTDVCR+      G+T EYPG+SEG+VHCHG VWPEDATDKYIHLLAQ+VQ FDH   +GYYGN+ GAPMCGC EDMPEVS+ADCT Y      E ++  C  NDLRTRY+  YP G L NLV  CDN
Sbjct:  162 HGFGWADGADVNTNILPLYHSVINTGRTEEGG-YYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYDVPDFDFRECDSHTYMCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYDVLYPDGDLDNLVGRCDN 417
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 2.370e-101
Identity = 166/347 (47.84%), Postives = 197/347 (56.77%), Query Frame = 2 
Query:  284 HGFAWADDADVTSYILPLLHHVKNVGRTADGGRYY----GNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPC-HNKLRGQYMGTLREPNGPMETNLVKTCDNDDVPDYDFRTCEHNTYMCCWTENDSTGMVDNT----------------------------------------DVCRV-------GKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYG---------------------------------------------NLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNLVDECDNA 1033
            HGFAWA+ ADV ++ILPL H+VKNVGRT + G Y      +VEG P+CGCIE++P V  +ECS+++ +GI  C +N L  QY G L EP GPM+ NLV+TCDN+D+PDYD  +C HNTYMCC TEND  GM +NT                                        DVCRV       G  E+ G+SE E H HGFVW EDATDKYIHLL+QFVQ FDHRDRRGYYG                                             ++ GAPM GCVE+MP VSEAD TTYD +P REGK T CT+NDL TRY E+YP G+L NLV   DNA
Sbjct:   96 HGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNEDIPDYDHGSCSHNTYMCCLTENDGQGMAENTVRRRVPAVASCVEFSCYSADRKDVGLTMLSVILGHLGATKDVCRVLDYPSVGGALEFAGDSEREAHRHGFVWTEDATDKYIHLLSQFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRTTGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTTYDTDPEREGKFTACTTNDLCTRYAEDYPTGELANLVGTYDNA 442
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 4.670e-98
Identity = 153/258 (59.30%), Postives = 161/258 (62.40%), Query Frame = 2 
Query:  284 HGFAWADDADVTSYILPLLHHVKNVGRTADGGRYYGNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPC-HNKLRGQYMGTLREPNGPMETNLVKTCDNDDVPDYDFRTCEHNTYMCCWTENDSTGMVDNTDVCRV-------GKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNLVDECDNA 1033
            HGFAWAD AD+ S+ILPL H+V NV RT DGG YYGNVEG P CGCIEDMPVV DA CSKF G+GI PC  N LR QY   L EP G ME NLV+ CDN+DVPDYDFRTC HNTYMCCWTEND  GM DNTDVCRV         TEYPG SEGE                                                     VSEADCTTYD+EPGREGK T CT NDLRTRYEEEYPMG+L NLV ECDNA
Sbjct:   64 HGFAWADGADIDSHILPLYHYVTNVNRTDDGG-YYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEGE-----------------------------------------------------VSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELSNLVGECDNA 267
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.950e-48
Identity = 76/153 (49.67%), Postives = 99/153 (64.71%), Query Frame = 2 
Query:  584 VPDYDFRTCEHNTYMCCWTENDSTGMVDNTDVCRVGKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNL-VDECDNAMG 1039
            V ++DF  C++NT+MCCW   +   + DNTDVC     E+PG+SEG VHCHGFVWPE+A+D +I  LA  V   +H D + Y GN+PGAP+C C+E+MPEVS ADCT Y            C+ NDLR  Y+E YP G+  +L V +CDN  G
Sbjct:   51 VKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDNRYG 203
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BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.940e-47
Identity = 76/153 (49.67%), Postives = 99/153 (64.71%), Query Frame = 2 
Query:  584 VPDYDFRTCEHNTYMCCWTENDSTGMVDNTDVCRVGKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLRTRYEEEYPMGQLGNL-VDECDNAMG 1039
            V ++DF  C++NT+MCCW   +   + DNTDVC     E+PG+SEG VHCHGFVWPE+A+D +I  LA  V   +H D + Y GN+PGAP+C C+E+MPEVS ADCT Y            C+ NDLR  Y+E YP G+  +L V +CDN  G
Sbjct:  115 VKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDNRYG 267
[Close]
BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.200e-34
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:  626 MCCWTENDSTGMV-DNTDVCRVGKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVTKCTSNDLR 967
            MCCW+       V DNTDV R G TE+PGESEG+VHCHG VWPE ++D+YI  LA  V +  H + +GY+G++PGAP+C C+E MPEVS +DC+ Y     +      C  NDLR
Sbjct:    1 MCCWSSRVGEEPVSDNTDVYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115
[Close]
BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.280e-34
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 2 
Query:  284 HGFAWADDADVTSYILPLLHHVKNVGRTADGGRYYGNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPC-HNKLRGQYMGTLREPNGPMETNLVKTCDN 577
            HGFAW D ADV ++ILPL H+VKN+GRT + G YYG+VEGAP+CGCIE+MP V  AECS+F  DGI+ C    L  QY G L  P G ME NLV++CDN
Sbjct:   81 HGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1701.4693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2N0_ECTSI3.070e-15278.29Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI4.000e-14476.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT55_ECTSI4.810e-14071.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI9.530e-12264.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L319_9PHAE2.370e-10147.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT81_9PHAE4.670e-9859.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8D2_ECTSI2.950e-4849.67Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI1.940e-4749.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHS4_ECTSI4.200e-3451.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9G6_9PHAE5.280e-3461.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1701contigL-elsbetiae_contig1701:1894..5722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score449.9
Seed ortholog evalue1e-123
Seed eggNOG ortholog2880.D7G2N0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1228
Cds size999
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.2687802-UTR-L-elsbetiae_contig1701:1893..19361622815708.2687802-UTR-L-elsbetiae_contig1701:1893..1936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1701 1894..1936 +
1691683051.107673-UTR-L-elsbetiae_contig1701:1893..19361691683051.107673-UTR-L-elsbetiae_contig1701:1893..1936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1701 1894..1936 +
1622815708.3413732-UTR-L-elsbetiae_contig1701:5536..57221622815708.3413732-UTR-L-elsbetiae_contig1701:5536..5722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1701 5537..5722 +
1691683051.1728885-UTR-L-elsbetiae_contig1701:5536..57221691683051.1728885-UTR-L-elsbetiae_contig1701:5536..5722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1701 5537..5722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.2787588-CDS-L-elsbetiae_contig1701:1936..22861622815708.2787588-CDS-L-elsbetiae_contig1701:1936..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 1937..2286 +
1691683051.1184027-CDS-L-elsbetiae_contig1701:1936..22861691683051.1184027-CDS-L-elsbetiae_contig1701:1936..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 1937..2286 +
1622815708.2883995-CDS-L-elsbetiae_contig1701:3764..38331622815708.2883995-CDS-L-elsbetiae_contig1701:3764..3833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 3765..3833 +
1691683051.1300948-CDS-L-elsbetiae_contig1701:3764..38331691683051.1300948-CDS-L-elsbetiae_contig1701:3764..3833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 3765..3833 +
1622815708.2984247-CDS-L-elsbetiae_contig1701:4357..45681622815708.2984247-CDS-L-elsbetiae_contig1701:4357..4568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 4358..4568 +
1691683051.1420765-CDS-L-elsbetiae_contig1701:4357..45681691683051.1420765-CDS-L-elsbetiae_contig1701:4357..4568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 4358..4568 +
1622815708.3106568-CDS-L-elsbetiae_contig1701:4914..50781622815708.3106568-CDS-L-elsbetiae_contig1701:4914..5078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 4915..5078 +
1691683051.1528494-CDS-L-elsbetiae_contig1701:4914..50781691683051.1528494-CDS-L-elsbetiae_contig1701:4914..5078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 4915..5078 +
1622815708.322661-CDS-L-elsbetiae_contig1701:5331..55361622815708.322661-CDS-L-elsbetiae_contig1701:5331..5536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 5332..5536 +
1691683051.1623387-CDS-L-elsbetiae_contig1701:5331..55361691683051.1623387-CDS-L-elsbetiae_contig1701:5331..5536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 5332..5536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1701.4693.1prot_L-elsbetiae_contig1701.4693.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1701 1937..5536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1701.4693.1

>prot_L-elsbetiae_contig1701.4693.1 ID=prot_L-elsbetiae_contig1701.4693.1|Name=mRNA_L-elsbetiae_contig1701.4693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=333bp
MLFVSCSQRSPVFSVLVSHPLGPDEGGGACEQTVSSAHFPFCLVFSHVES
VFLDFLLLRPQPPPTLTRPSLLLYQPANRSHGFAWADDADVTSYILPLLH
HVKNVGRTADGGRYYGNVEGAPQCGCIEDMPVVDDAECSKFTGDGILPCH
NKLRGQYMGTLREPNGPMETNLVKTCDNDDVPDYDFRTCEHNTYMCCWTE
NDSTGMVDNTDVCRVGKTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQF
VQHFDHRDRRGYYGNLPGAPMCGCVEDMPEVSEADCTTYDDEPGREGKVT
KCTSNDLRTRYEEEYPMGQLGNLVDECDNAMG*
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mRNA from alignment at L-elsbetiae_contig1701:1894..5722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1701.4693.1 ID=mRNA_L-elsbetiae_contig1701.4693.1|Name=mRNA_L-elsbetiae_contig1701.4693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3829bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:1894..5722+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAAGCGAAAGTCTCCGCTCACAATCCAAAACAGATAGATGCATGTTGT
TTGTTTCTTGTTCTCAAAGGAGCCCCGTGTTTTCCGTTTTGGTCTCACAC
CCCTTGGGGCCTGACGAAGGCGGGGGGGCGTGCGAACAAACAGTATCTAG
TGCCCATTTTCCATTTTGTCTCGTGTTTTCTCATGTTGAGAGTGTATTTC
TCGACTTCTTACTCCTCCGCCCCCAACCCCCGCCCACACTCACTCGCCCG
TCGCTGCTACTGTATCAACCCGCCAACCGCAGCCACGGCTTTGCCTGGGC
GGACGACGCCGATGTCACGTCCTACATTTTGCCCCTTTTGCACCACGTCA
AGAACGTCGGCCGCACCGCGGACGGGGGAAGATACTACGGAAAGTGAGGA
AAAGAGCATTCACTCATTGCCTGGTCCTCCTGCATGATGACCTGTACTAC
AGATAGCTGCGGCCTGGGCCCGCACTTGAGAGCTTGGCAGCTAAGAACTT
CACCGTTTGAATTGGCGTCAAAAATTAGAACACGGCCGTATTATAAGAAC
ATTATGCGTGCTCGGCTCGGAGGTGTGGCCACGACGAAGAACAAGAACCA
ACCTACTGTAGACTAACAAGGGGAGGTGTAAAACGGGGTCCACGACGCGG
TGTAGCCGAAAGAAAAAAAACACTGGATCGTAGGGTCGCCCCCCAAAGAA
GGTTGGATCAACAAGAGTGGGGGGGGGGGGCTGGGTGACGCTCAAAAACA
CCGAACCCCCAGGTGTTGCTCAAAATATCGCCACACTTGCATCTGCGTTC
GTTCCCCCTCCTTTGTTTTTTGCGGTACCCGAGGCTCTGTCTGTAGGAAG
CGAGGTCGCCATGGCATTGCCTTTGTTTCGCGACGAATGAGTGCCTGCTC
GAAACACGAACTTGGCGAATAAGAACAGGTGCTCGGATTCCGGCGGCCAA
TAAGCCTCGAGGGTTACCCAGAATAAGCGGTTATCCTTAGGTGCGGGCCG
CAGCCTGTATCGTTGCTGCTGTTCCAACTAACTGTCTCAGATTTGAGAGT
ATCATACAACACGTGCCGTCCTATTTCTTGTCGGAAAAACTTAGAACTTA
GGTACATAAATAGCATACCGCAATCATGCGAGTGATCACACCCCCCCGGA
CCGATTTTCAAAGCTTGGTTACTCCTTCACGAAGAGGGTACCAACACCAA
ACGGCACGTTTTTATGACAGATCTCGACGTGATCGTGCCAATGCCACCCT
TTTCGGTGCCCGCACCCCTCTTCGTCAAGGCGCAATTGAGCCTTGAAAAT
CGGTACGGGGGGGTGCGATGACTCGCATGATTTACGGTAGTTTTTCTCTG
TTCCTCTGTCGCGTGCAATAGTTCTCTTCACACACAGACAGGTTAAAGCC
ATCAATCATATTTTGATTCGGCCTGCTCATCGCACCCTCACATTTTAGTG
CAAAAACTAGATGTTTCCACGCCCGTGACGCATGTTAGTCGTGGACTCCG
TTCACCATCTGCTCTCGACGAACCGGATATCGCCGCGCTACGATGTACAA
ACGCTAGGCAAATCAACCACGTGCTCTCCCTATGCACTCCCGAAACTTCT
CCGGGGAAAGAGTGTAGACTGGTAGCCGTAGTACATTGTGTCGTCTAGCT
AGTCGTAGTGGAGGAAGGAGGCCAGTGGGGCAGACGACGAAAAAGCCAAT
AATGGAAGGAAAAAAAATAAAATATATACTTCTACTTCGTACATACATCT
ACTTGTATGAGTACATGAATCACGATGTGTTATCCTCAATCTTCGAGCAT
CGACCCCCTGCTCCCCGGCCGCCGTGATGCTCACTTGCTTTCTTGGCAAT
CGTTTTCTTTTGGCACCGCAGCGTCGAGGGGGCGCCGCAATGCGGCTGCA
TCGAGGACATGCCCGTGGTTGACGACGCCGAGTGCTCCAAGTGAGAAACA
TACAAAATAGATAGATAAAAAAAAAAAGATCTGCGTTGTTGTTTTCTTCG
GGCATTGCTCCCTTCACTGTGCTTTGGACACGTGTACATGCATACACTGT
TGGTTCTGTTCGACAGAAACCGCCCGACTCCTTTACCAGGAAAAATCGCG
ACGTTTCCCTCCCACTGCGCTGCAGTGCGATTGATATGTAGCGCAGTAGG
CGTCCCGAAATCAGGGCACGCGGCCAAGAATTGAGTGCGCACGACCAGCG
AACGTCGACTGGAGTTGATTTCGGTGCGGGATGTTTTTTACTCTTCGCAT
TTTTTCGTCGTTGTGTTGATGTGTGTCAAGCAAAAAGCGCAGTCCAGTCG
CTACATTTACTGCTGCTGCGCTTCGTCGAGACTTGTTTCCGGCTGTTCGA
CCAAAATTCGCGATTTACAAACACTAAAGGAGTATTTATATTGATTTATT
TTGTCCCCGGTGGTGGTGTGTTTTTGTGCGTTTCAACGAAAAACATGGGT
AATTGTTTTGCCAGGTTTACGGGCGACGGGATCTTGCCGTGCCACAACAA
GCTACGCGGCCAGTACATGGGCACCCTGAGGGAGCCGAACGGCCCGATGG
AGACCAACCTGGTGAAGACGTGCGACAACGACGACGTGCCCGACTACGAC
TTCCGCACCTGCGAGCACAACACGTACATGTGCTGCTGGACGGAGAACGA
CAGCACGGGGATGGTCGACAACACGGTGCGTTCGTTCTTCATGCTTTACT
TTTTATATTTTGTTGGTCTGTCCCCCAACGCCAGCAAGCAGTACGTCCTT
CCTTCCTACGTACGTCCGCGAGCGTTATTTCCCCCCCAAGGCATCCAGGA
GGCAGAACCTCCGTACGTCCGTACTAGTCAAATACTCGACGCGGTCGATT
CCTGTGCATACTCGTGCCGCATTTTGTCAGACCTCCACCGAGGGACCAGA
AAAAATGGCAAGTAAGTGGTGTTTGTTTTTGTTTCTACATAATTAATTCT
GGTTTTCTTGTCGCCCGTACCAAACTCGCAGTGTGTTCCTACTGCCGTAC
CACGCGTTTGTTTGTTTTTAGGATGTCTGCCGCGTAGGCAAGACGGAGTA
CCCCGGGGAGAGCGAGGGAGAGGTGCACTGCCACGGGTTCGTGTGGCCCG
AGGACGCCACCGACAAGTACATCCACCTCCTCGCCCAGTTCGTGCAGCAC
TTCGACCACAGGGACAGGAGGGGCTACTACGGAAAGTGAGAGAGCCTTGT
TGTGGGTGCCCGCCAGTGCTTTACGGTCTTAGTCCCAGAGCCCCTGACTT
ATAAACGCCCCTTGCCGGCCTTGAAAATCATCGTAAATAGGCAAAACACA
TTCCGTCCACCACCTTGAAGTCAAGAAGACTACAAAACAGCAACATACGA
TACATAACGCCTTTTTACATTTTTTCGACTCGGTCATCATCCCATCCCGC
CGCCCCCGCCGCCGCCGCTGGTGTTGTGCTTCCCGCAGCCTCCCCGGTGC
TCCGATGTGCGGCTGCGTCGAGGACATGCCCGAGGTGTCCGAGGCGGACT
GCACCACCTACGACGACGAGCCCGGCCGCGAGGGCAAGGTCACGAAGTGC
ACCAGCAACGACCTCCGCACCCGCTACGAAGAGGAGTACCCCATGGGCCA
GCTCGGCAACCTCGTGGACGAGTGCGACAACGCGATGGGCTAAAAATAAA
TGCTGGTCGGAGTGCACAATAAGAACAAGAGACTTTACCACCACCCGCCG
TCTGGACCAGATTTTTGTTTTTTTGGCCACCGTGATGTTTGTTCGTGCGC
TGCTTGGGCGGTTCCTCCCCCCACGGGACTCCTCTCCTGCTGTAGCACGA
AGCACCTACCTACACACCTCCCGCTCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1701:1894..5722+

>mRNA_L-elsbetiae_contig1701.4693.1 ID=mRNA_L-elsbetiae_contig1701.4693.1|Name=mRNA_L-elsbetiae_contig1701.4693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1998bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:1894..5722+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTTTGTTTCTTGTTCTCAAAGGAGCCCCGTGTTTTCCGTTTTGGT
CTCACACCCCTTGGGGCCTGACGAAGGCGGGGGGGCGTGCGAACAAACAG
TATCTAGTGCCCATTTTCCATTTTGTCTCGTGTTTTCTCATGTTGAGAGT
GTATTTCTCGACTTCTTACTCCTCCGCCCCCAACCCCCGCCCACACTCAC
TCGCCCGTCGCTGCTACTGTATCAACCCGCCAACCGCAGCCACGGCTTTG
CCTGGGCGGACGACGCCGATGTCACGTCCTACATTTTGCCCCTTTTGCAC
CACGTCAAGAACGTCGGCCGCACCGCGGACGGGGGAAGATACTACGGAAA
ATGTTGTTTGTTTCTTGTTCTCAAAGGAGCCCCGTGTTTTCCGTTTTGGT
CTCACACCCCTTGGGGCCTGACGAAGGCGGGGGGGCGTGCGAACAAACAG
TATCTAGTGCCCATTTTCCATTTTGTCTCGTGTTTTCTCATGTTGAGAGT
GTATTTCTCGACTTCTTACTCCTCCGCCCCCAACCCCCGCCCACACTCAC
TCGCCCGTCGCTGCTACTGTATCAACCCGCCAACCGCAGCCACGGCTTTG
CCTGGGCGGACGACGCCGATGTCACGTCCTACATTTTGCCCCTTTTGCAC
CACGTCAAGAACGTCGGCCGCACCGCGGACGGGGGAAGATACTACGGAAA
CGTCGAGGGGGCGCCGCAATGCGGCTGCATCGAGGACATGCCCGTGGTTG
ACGACGCCGAGTGCTCCAACGTCGAGGGGGCGCCGCAATGCGGCTGCATC
GAGGACATGCCCGTGGTTGACGACGCCGAGTGCTCCAAGTTTACGGGCGA
CGGGATCTTGCCGTGCCACAACAAGCTACGCGGCCAGTACATGGGCACCC
TGAGGGAGCCGAACGGCCCGATGGAGACCAACCTGGTGAAGACGTGCGAC
AACGACGACGTGCCCGACTACGACTTCCGCACCTGCGAGCACAACACGTA
CATGTGCTGCTGGACGGAGAACGACAGCACGGGGATGGTCGACAACACGG
TTTACGGGCGACGGGATCTTGCCGTGCCACAACAAGCTACGCGGCCAGTA
CATGGGCACCCTGAGGGAGCCGAACGGCCCGATGGAGACCAACCTGGTGA
AGACGTGCGACAACGACGACGTGCCCGACTACGACTTCCGCACCTGCGAG
CACAACACGTACATGTGCTGCTGGACGGAGAACGACAGCACGGGGATGGT
CGACAACACGGATGTCTGCCGCGTAGGCAAGACGGAGTACCCCGGGGAGA
GCGAGGGAGAGGTGCACTGCCACGGGTTCGTGTGGCCCGAGGACGCCACC
GACAAGTACATCCACCTCCTCGCCCAGTTCGTGCAGCACTTCGACCACAG
GGACAGGAGGGGCTACTACGGAAAGATGTCTGCCGCGTAGGCAAGACGGA
GTACCCCGGGGAGAGCGAGGGAGAGGTGCACTGCCACGGGTTCGTGTGGC
CCGAGGACGCCACCGACAAGTACATCCACCTCCTCGCCCAGTTCGTGCAG
CACTTCGACCACAGGGACAGGAGGGGCTACTACGGAAACCTCCCCGGTGC
TCCGATGTGCGGCTGCGTCGAGGACATGCCCGAGGTGTCCGAGGCGGACT
GCACCACCTACGACGACGAGCCCGGCCGCGAGGGCAAGGTCACGAAGTGC
ACCAGCAACGACCTCCGCACCCGCTACGAAGAGGAGTACCCCATGGGCCA
GCTCGGCAACCTCGTGGACGAGTGCGACAACGCGATGGGCTAACCTCCCC
GGTGCTCCGATGTGCGGCTGCGTCGAGGACATGCCCGAGGTGTCCGAGGC
GGACTGCACCACCTACGACGACGAGCCCGGCCGCGAGGGCAAGGTCACGA
AGTGCACCAGCAACGACCTCCGCACCCGCTACGAAGAGGAGTACCCCATG
GGCCAGCTCGGCAACCTCGTGGACGAGTGCGACAACGCGATGGGCTAA
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