mRNA_L-elsbetiae_contig17000.4691.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17000.4691.1
Unique NamemRNA_L-elsbetiae_contig17000.4691.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17000.4691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17000contigL-elsbetiae_contig17000:1234..2157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_000120.1
Exons2
Model size681
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17000.4691.1prot_L-elsbetiae_contig17000.4691.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17000 1466..2068 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.065936-UTR-L-elsbetiae_contig17000:1233..14651622815708.065936-UTR-L-elsbetiae_contig17000:1233..1465Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 1234..1465 -
1691683051.011463-UTR-L-elsbetiae_contig17000:1233..14651691683051.011463-UTR-L-elsbetiae_contig17000:1233..1465Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 1234..1465 -
1622815708.1085796-UTR-L-elsbetiae_contig17000:2068..21571622815708.1085796-UTR-L-elsbetiae_contig17000:2068..2157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 2069..2157 -
1691683051.0377738-UTR-L-elsbetiae_contig17000:2068..21571691683051.0377738-UTR-L-elsbetiae_contig17000:2068..2157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 2069..2157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.0807443-CDS-L-elsbetiae_contig17000:1465..16311622815708.0807443-CDS-L-elsbetiae_contig17000:1465..1631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17000 1466..1631 -
1691683051.0211375-CDS-L-elsbetiae_contig17000:1465..16311691683051.0211375-CDS-L-elsbetiae_contig17000:1465..1631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17000 1466..1631 -
1622815708.093693-CDS-L-elsbetiae_contig17000:1874..20681622815708.093693-CDS-L-elsbetiae_contig17000:1874..2068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17000 1875..2068 -
1691683051.0292814-CDS-L-elsbetiae_contig17000:1874..20681691683051.0292814-CDS-L-elsbetiae_contig17000:1874..2068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17000 1875..2068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17000.4691.1

>prot_L-elsbetiae_contig17000.4691.1 ID=prot_L-elsbetiae_contig17000.4691.1|Name=mRNA_L-elsbetiae_contig17000.4691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MWCGFDPKQRGSPPFALLYRAPPSSLFSLFVHMFFRSPCDQVIHRLPGLD
PACTTVGGLKEALVKCNEMQLFTPGQLALRTQGTLLTDDSVLLSATGVSF
GSRGSQLQDIFLYVPHLIS*
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mRNA from alignment at L-elsbetiae_contig17000:1234..2157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17000.4691.1 ID=mRNA_L-elsbetiae_contig17000.4691.1|Name=mRNA_L-elsbetiae_contig17000.4691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig17000:1234..2157- (Laminarionema elsbetiae ELsaHSoW15)
CTTGAGCATACTGACATCGCACGCATTAATTCCGCCAAACCCAACGGAAC
TCAGTTCACAATGCCTCGGAGCGTGAATCCAGTACCCCCATGTGGTGCGG
CTTCGACCCAAAGCAGCGAGGCTCTCCGCCGTTCGCTTTGTTATACAGGG
CTCCCCCATCCTCGTTGTTTTCGCTTTTTGTACACATGTTTTTTCGTTCT
CCTTGCGACCAGGTTATTCACCGCCTACCCGGCTTGGATCCGGCCTGTAC
GACCGTGGGCGGCCTGAAAGAGGCCCTTGTCAAGTGAGTCCACGGCTTTT
TTTGCGACTGGCTGCCTGTGTACAGCAGTACTGCATCTACTTGATTTCAG
TTGGTCGCCCCGTGCACCGTCTGAACATGTCACCCTCCGTTCTTAGAACC
TACCGAGCATCTGGGGCTACATCTCTTTATTATTGCTGCCCACGAGTTTA
CGGTGGATGGATACACCCGGCCTCGCATGCCGCATGCTCAGAACGGCACA
CGCCGCCCCCCTCCCCACACTCGCAGGTGCAACGAAATGCAGTTGTTCAC
CCCGGGGCAGCTGGCGCTACGCACCCAGGGGACTCTCCTGACGGACGATT
CCGTTCTCCTGAGCGCGACGGGCGTGTCGTTCGGCTCTCGGGGGAGCCAG
CTCCAAGACATCTTCCTTTACGTGCCGCATCTGATCAGCTAGCTATCGTC
CACTAGCTAGCTCTGTGTCTGCGTCCAAAGATACATTTTTTTACCGGTGT
GTCTACAGCATTGCCGTGGTCCAACAGGCTGTTTGCCTGGTGGGGGTAGG
GAAGTATCTTGTTTTCTTTGCCGTCGGTCTCGGCTACGATGGTTTGGTAC
ACTGGTTGCCCTGGATGCCCGTCTCTTTGTCCTTCGGCTTTCTCATATTT
TCTTCAAAAATAAAAAACTCCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17000:1234..2157-

>mRNA_L-elsbetiae_contig17000.4691.1 ID=mRNA_L-elsbetiae_contig17000.4691.1|Name=mRNA_L-elsbetiae_contig17000.4691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig17000:1234..2157- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTGCGGCTTCGACCCAAAGCAGCGAGGCTCTCCGCCGTTCGCTTT
GTTATACAGGGCTCCCCCATCCTCGTTGTTTTCGCTTTTTGTACACATGT
TTTTTCGTTCTCCTTGCGACCAGGTTATTCACCGCCTACCCGGCTTGGAT
CCGGCCTGTACGACCGTGGGCGGCCTGAAAGAGGCCCTTGTCAAATGTGG
TGCGGCTTCGACCCAAAGCAGCGAGGCTCTCCGCCGTTCGCTTTGTTATA
CAGGGCTCCCCCATCCTCGTTGTTTTCGCTTTTTGTACACATGTTTTTTC
GTTCTCCTTGCGACCAGGTTATTCACCGCCTACCCGGCTTGGATCCGGCC
TGTACGACCGTGGGCGGCCTGAAAGAGGCCCTTGTCAAGTGCAACGAAAT
GCAGTTGTTCACCCCGGGGCAGCTGGCGCTACGCACCCAGGGGACTCTCC
TGACGGACGATTCCGTTCTCCTGAGCGCGACGGGCGTGTCGTTCGGCTCT
CGGGGGAGCCAGCTCCAAGACATCTTCCTTTACGTGCCGCATCTGATCAG
CTAGGTGCAACGAAATGCAGTTGTTCACCCCGGGGCAGCTGGCGCTACGC
ACCCAGGGGACTCTCCTGACGGACGATTCCGTTCTCCTGAGCGCGACGGG
CGTGTCGTTCGGCTCTCGGGGGAGCCAGCTCCAAGACATCTTCCTTTACG
TGCCGCATCTGATCAGCTAG
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