mRNA_L-elsbetiae_contig17000.4690.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17000.4690.1
Unique NamemRNA_L-elsbetiae_contig17000.4690.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17000.4690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17000contigL-elsbetiae_contig17000:541..1183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size643
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17000.4690.1prot_L-elsbetiae_contig17000.4690.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17000 663..1145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.0043523-UTR-L-elsbetiae_contig17000:540..6621622815708.0043523-UTR-L-elsbetiae_contig17000:540..662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 541..662 +
1691683050.974568-UTR-L-elsbetiae_contig17000:540..6621691683050.974568-UTR-L-elsbetiae_contig17000:540..662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 541..662 +
1622815708.028268-UTR-L-elsbetiae_contig17000:1145..11831622815708.028268-UTR-L-elsbetiae_contig17000:1145..1183Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 1146..1183 +
1691683050.9991128-UTR-L-elsbetiae_contig17000:1145..11831691683050.9991128-UTR-L-elsbetiae_contig17000:1145..1183Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17000 1146..1183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.0143526-CDS-L-elsbetiae_contig17000:662..11451622815708.0143526-CDS-L-elsbetiae_contig17000:662..1145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17000 663..1145 +
1691683050.9861138-CDS-L-elsbetiae_contig17000:662..11451691683050.9861138-CDS-L-elsbetiae_contig17000:662..1145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17000 663..1145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17000.4690.1

>prot_L-elsbetiae_contig17000.4690.1 ID=prot_L-elsbetiae_contig17000.4690.1|Name=mRNA_L-elsbetiae_contig17000.4690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MLAKRRAVMEMRLAGSKVKEESAAMAAVASTRAHLAMAAATTAAAGKGTG
QGSHAVRLKRSWQQQQGAEEGPPGASSVLPDLPHSGHEHGDEVMPPSADA
HKELNCVGDNLVQSDVTFFCNGELAKHGVNPLPSGMGVVEALLQVAAVET
GLFRNVIRFI*
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mRNA from alignment at L-elsbetiae_contig17000:541..1183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17000.4690.1 ID=mRNA_L-elsbetiae_contig17000.4690.1|Name=mRNA_L-elsbetiae_contig17000.4690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=643bp|location=Sequence derived from alignment at L-elsbetiae_contig17000:541..1183+ (Laminarionema elsbetiae ELsaHSoW15)
TCCAGGACGAGAGCGCGGCAGAGCGTCGGAGGCGGTTGGAGCATGAATCG
ACAAAGCGCATCAGGGAGGCTCTGGAGTTGACCAGACGAGACCGTGCGTG
GGGCCGTCGAGGCTGGTTGTTGATGCTGGCCAAGAGGCGCGCGGTAATGG
AGATGCGGCTGGCTGGTTCCAAGGTGAAGGAAGAAAGCGCGGCGATGGCT
GCCGTTGCGTCTACCCGTGCACACCTGGCGATGGCGGCGGCGACGACGGC
GGCGGCAGGGAAAGGAACGGGCCAGGGCAGTCACGCCGTTCGCCTAAAGC
GGTCTTGGCAGCAGCAGCAAGGTGCAGAGGAAGGTCCCCCAGGTGCTTCG
TCTGTCCTCCCCGACCTGCCGCACTCTGGTCATGAACATGGAGACGAGGT
GATGCCGCCGAGTGCCGATGCACACAAGGAGCTGAACTGCGTCGGTGACA
ATTTGGTGCAGTCAGATGTTACATTTTTTTGTAATGGGGAACTGGCAAAG
CATGGTGTCAACCCGTTGCCGTCGGGGATGGGGGTGGTCGAAGCGTTGCT
CCAGGTAGCCGCTGTAGAAACGGGCTTGTTTCGCAACGTGATCCGCTTCA
TCTAGTTGCTTTCATTGGGAAGAGGAGATATGCGTGTCGTGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17000:541..1183+

>mRNA_L-elsbetiae_contig17000.4690.1 ID=mRNA_L-elsbetiae_contig17000.4690.1|Name=mRNA_L-elsbetiae_contig17000.4690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig17000:541..1183+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGCCAAGAGGCGCGCGGTAATGGAGATGCGGCTGGCTGGTTCCAA
GGTGAAGGAAGAAAGCGCGGCGATGGCTGCCGTTGCGTCTACCCGTGCAC
ACCTGGCGATGGCGGCGGCGACGACGGCGGCGGCAGGGAAAGGAACGGGC
CAGGGCAGTCACGCCGTTCGCCTAAAGCGGTCTTGGCAGCAGCAGCAAGG
TGCAGAGGAAGGTCCCCCAGGTGCTTCGTCTGTCCTCCCCGACCTGCCGC
ACTCTGGTCATGAACATGGAGACGAGGTGATGCCGCCGAGTGCCGATGCA
CACAAGGAGCTGAACTGCGTCGGTGACAATTTGGTGCAGTCAGATGTTAC
ATTTTTTTGTAATGGGGAACTGGCAAAGCATGGTGTCAACCCGTTGCCGT
CGGGGATGGGGGTGGTCGAAGCGTTGCTCCAGGTAGCCGCTGTAGAAACG
GGCTTGTTTCGCAACGTGATCCGCTTCATCTAGATGCTGGCCAAGAGGCG
CGCGGTAATGGAGATGCGGCTGGCTGGTTCCAAGGTGAAGGAAGAAAGCG
CGGCGATGGCTGCCGTTGCGTCTACCCGTGCACACCTGGCGATGGCGGCG
GCGACGACGGCGGCGGCAGGGAAAGGAACGGGCCAGGGCAGTCACGCCGT
TCGCCTAAAGCGGTCTTGGCAGCAGCAGCAAGGTGCAGAGGAAGGTCCCC
CAGGTGCTTCGTCTGTCCTCCCCGACCTGCCGCACTCTGGTCATGAACAT
GGAGACGAGGTGATGCCGCCGAGTGCCGATGCACACAAGGAGCTGAACTG
CGTCGGTGACAATTTGGTGCAGTCAGATGTTACATTTTTTTGTAATGGGG
AACTGGCAAAGCATGGTGTCAACCCGTTGCCGTCGGGGATGGGGGTGGTC
GAAGCGTTGCTCCAGGTAGCCGCTGTAGAAACGGGCTTGTTTCGCAACGT
GATCCGCTTCATCTAG
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