mRNA_L-elsbetiae_contig17.4682.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17.4682.1
Unique NamemRNA_L-elsbetiae_contig17.4682.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17.4682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17contigL-elsbetiae_contig17:39110..43168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size726
Cds size726
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17.4682.1prot_L-elsbetiae_contig17.4682.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17 39110..43168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.3940935-CDS-L-elsbetiae_contig17:39109..391421622815706.3940935-CDS-L-elsbetiae_contig17:39109..39142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 39110..39142 +
1691683049.7545362-CDS-L-elsbetiae_contig17:39109..391421691683049.7545362-CDS-L-elsbetiae_contig17:39109..39142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 39110..39142 +
1622815706.4096365-CDS-L-elsbetiae_contig17:39543..396781622815706.4096365-CDS-L-elsbetiae_contig17:39543..39678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 39544..39678 +
1691683049.762807-CDS-L-elsbetiae_contig17:39543..396781691683049.762807-CDS-L-elsbetiae_contig17:39543..39678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 39544..39678 +
1622815706.4227738-CDS-L-elsbetiae_contig17:39917..400461622815706.4227738-CDS-L-elsbetiae_contig17:39917..40046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 39918..40046 +
1691683049.770822-CDS-L-elsbetiae_contig17:39917..400461691683049.770822-CDS-L-elsbetiae_contig17:39917..40046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 39918..40046 +
1622815706.4346533-CDS-L-elsbetiae_contig17:41142..412711622815706.4346533-CDS-L-elsbetiae_contig17:41142..41271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 41143..41271 +
1691683049.7788138-CDS-L-elsbetiae_contig17:41142..412711691683049.7788138-CDS-L-elsbetiae_contig17:41142..41271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 41143..41271 +
1622815706.4451046-CDS-L-elsbetiae_contig17:42089..423041622815706.4451046-CDS-L-elsbetiae_contig17:42089..42304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 42090..42304 +
1691683049.7867656-CDS-L-elsbetiae_contig17:42089..423041691683049.7867656-CDS-L-elsbetiae_contig17:42089..42304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 42090..42304 +
1622815706.4566064-CDS-L-elsbetiae_contig17:43083..431681622815706.4566064-CDS-L-elsbetiae_contig17:43083..43168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 43084..43168 +
1691683049.7992697-CDS-L-elsbetiae_contig17:43083..431681691683049.7992697-CDS-L-elsbetiae_contig17:43083..43168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17 43084..43168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17.4682.1

>prot_L-elsbetiae_contig17.4682.1 ID=prot_L-elsbetiae_contig17.4682.1|Name=mRNA_L-elsbetiae_contig17.4682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
LHAFNQLFTSPLNRAAEMKKQLLERDRDGWSVAMHAVRAGHVVVVETVLE
EVRDSGARAALTAKDYLQMTLTMHAAAAGNAAIFQEVVKAVDSDLTDAEM
AEHMVLRSGDDQTLLMIAAASSDKMTFKACVEALRLAVTPHDFRVLMKVR
DADGMTFLMHAANPASSGSKSNKRPKPKRLQQGSGGGGGGHDPISRSSTT
GHIGLHTTGPFHSSSAPAHTARSGPGCLPPPAPVLAQSVSGG
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mRNA from alignment at L-elsbetiae_contig17:39110..43168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17.4682.1 ID=mRNA_L-elsbetiae_contig17.4682.1|Name=mRNA_L-elsbetiae_contig17.4682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4059bp|location=Sequence derived from alignment at L-elsbetiae_contig17:39110..43168+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGCGTTCAACCAGCTCTTTACCAGTCCCGTGAGTCCTAAGTCACT
CCGATGCTGTTGTGATTGTTGTCGTTGTTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCCACTACCATTCTCGCCATGTTCATCCCTTACCCTTAACCTTC
GGCAGTTTGGCTATTTTCGTGCTCGCCCACTGTTGCTGGGGTTAGTGCAT
GTGGAGGTCTACAGATAGTACATACGTGTTGCAAAGCATTATCTTGGGGC
TAGCTCTCTCTTCGACGAAAGTTAAAGCCCAACCAACCAAGTCAATCCCA
CCTTTCTCCTGCGTAGTAAAGTCGTGCCTTTAACTTCGGCGTTGTTTTCC
GCGATTTACCGGCAGCAATGCCTACCCTTACCCGAAAAAAAGTCCTGATA
ACCCAACCCGGATCCTGATACTGGTTGGTTGCAGTTGAACCGTGCAGCAG
AGATGAAGAAGCAGCTTTTGGAGCGCGACAGGGATGGCTGGAGCGTCGCC
ATGCACGCCGTCCGCGCGGGACACGTGGTCGTGGTGGAGACGGTCCTGGA
AGAGGTTCGAGACTCCGGAGTGAGTTGATTGATGGTGGTGGTCCGGTGGT
CGTCGGTTTTGTTGATCCTGATGAAGGAGGATGGTGATGATGGTGATACG
TCTTTTTTGCGGTACCATTTTCTTTGGCCGCTGTCGGTGTTGAACTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCT
GCTGCTGCTGCTGGCGCCGCTCCCTGCCCCTCTCGTGTTTCCGGCCGGGC
GAACCCAGGCGCGAGCGGCACTCACGGCTAAGGACTACCTGCAGATGACG
CTCACCATGCACGCGGCAGCTGCGGGTAACGCGGCCATCTTCCAGGAGGT
GGTGAAGGCCGTAGACTCGGATCTTACGGACGCCGAGGTGACTGCGGCTA
TATTTAGTTTAACCGTAGTCACCGCTGTTTTGCCGTCGTTGTTGCGTTGG
TTGCTCGTTGTGGCCGGCCGCTCGAGCCGCTTTGGCCGTTGCTTCCGCTG
CTGCTGTAGAACGCCCGTGCCGTTGACAGTCCCGTTATCGTCGTCGTTGG
CGTGGTATTGTGTAGTGTGGTTGCCCTACTTGGCATTGTTTTTGTGTGCC
TTTGGTCGGGGGTTTCATGGCGGTGCCGTTTTCCTCTGTCGTCGCGATCT
TCACCCGAAAAGAAGGGATCGAAGGCTGAGCAAGACTTGGATGCAAAAGG
TGTTTGCTGGTGGTGGCGGTTCAAAGGTACTCGGCCAGGTGACCTCTTGA
GATACCGCAACTCAAAATGCGAAGCAATTGGTCTCCCCTTTCGAGTGTAA
AGACATCATAAATACACCACAAGACTCTGCAAGTCGCCCATTCCATCTTG
TGCATGTACATATCGTGAGGATGAAGGCACGCTATTACGTACGTTTCAAA
TCGCGCACGATAGCGCACACCACTTGTGTTTGTACCTTGATTGACACTTC
TGGGCGTCCGTTGCGTGGGTGTTGTTGTCGGTGTCGGTTGCTGAGAGGAG
TGTGGAGTATATCTTGGGCACCTTGGACGCCCGATCCGTGGTCACGAAAG
CCCGAATTCGTACGTACGCAGAAGGTGGCGGTTCGGGCGAACGAAGAGAA
ACGAACAATCCGGAGTTGGCTTGAAACGCTTGAATGCACTTGTGCGTGTG
GTCTTGTACGGGTGGAGGAGGGACTGCGCTAGTGTGGTGTCTCCCCTTCT
GCCTGCATCTAAGCTGTGTCTTGCCCATAGTCCCCATGTTGTTGTTGTTG
TTGTTGTTTCTTCACATTAAAAACCGTCCCAATCTCTCCACCCAGTACCT
CCCTATGTCCGTACAGTCCAACACTTGATGCGGTCAATTCCCGTGGTCAC
AGGATAACCCACTCATACCTAAAAAATACGTCTGAATAACAGTGGCGCCA
CCAACACATGTGCACACTTTCTCCCACACGACGCTTTTCCGTCACGGCTT
CGCTTTCCTGCTGGCGTGTTCTCGTTTTCTCAGATGGCGGAGCACATGGT
GCTGAGGTCAGGGGACGACCAGACACTGCTGATGATCGCCGCGGCCTCCT
CCGATAAGATGACCTTCAAGGCGTGTGTCGAAGCCCTGAGGCTCGCTGTT
ACCCCGCACGACGTGAGAGCATGAGAACAAAAGCAAAACGACCTACATAG
AAATGTGTATGGTATCCGTGAACGATTCCTGTGTGAACGCTACATATGAG
AGCAATTCCCGGAAATATGCGTCCACGAACAATCCCCGTGTGAACACGAG
GATAGGTCCTAGAAAATGAGGTTCATTAATGATTGCACATGAACATGAAA
ACAACACCTAGAAGTTATGTTCATGAACATTTTCGTTTCGGAGCAGGACA
AACTCTTTCCTCGCCTTATACGTTCCTCTCGTGCGCAGACTTTTTACTTC
AGGTTCCAACCTTTCACCGGCAATTCTCAATCGCTTTGATTTTTAGTGCC
TCTCCCAGCAAGTTCCATGTGCCATGGTGATATAATTGTTTAGATGACCA
CCGAGTAATTTGGGCCGATTTGTCACCTCTCCCAATAGTACAGATTTCAT
GTTTTTTGTGACGACTGCGGAGCGGGGGATAGGCATGCGCCGCCCATCAC
CCCCCCCCCCCCCCCGGAGGCAATAGTGTCGCAGAAGTTCCGCGACAAAG
TCGACTAAAAACACGAAAAGTGTGGGCATATCATAATGTCATCAATCATG
CCATCACCATCTCATCATCGCCACCGCCCAATACCACAACCACCACCGCC
ACCACCGCCACCGCTACCAACACCGCTACCATTCACGTCCCTGAACCACG
CGCCCCGCCGCTAACACCACCGCCGCCGCGGCCGCCGCCGCCGCCACTGC
CACTGCCACCCCCCGCCTCCACCGCTGACAACAACGACACGGGCAACGAT
AACGCTGCAACAAAACCTGATGTTAAATAGTTTAGGGTGCTGATGAAGGT
CAGGGATGCGGATGGCATGACCTTCCTCATGCACGCCGCAAACCCAGCTT
CCTCCGGCAGCAAGAGCAACAAGAGGCCCAAGCCGAAGAGGCTTCAGCAA
GGCAGCGGCGGCGGCGGCGGTGGCCACGACCCCATCTCAAGGTCGTCCAC
CACCGGGCACATCGGCCTTCATACCACGGGGCCTTTTCATAGTAGGCAAG
ACTAGTTCGTCGTTCTTCCTTCGTTGAGTTTATTTTTCACAAAAGGCTTA
CGTGATAGCCGTGTGAGTATGTACGATAGTCTACTTCTCGCGGCACGTTT
TGTGGCATCGCGTCTACTGTGTTTGTTTGCTTCGGAGGTGTAGTTGCTGG
TACTACCTTACAGACCCTCGTTTCCCTACGGTTGTGGAGGAGAACGATGC
CATTGCGCGTGAATGTTGAGAGCTTTCGAATGTTGGCGGCGCGGCGACTC
TGCTTGAAAAGGAAAAACGTTTGAGCGAAGGGCTGAATTTCTCTACTCGC
GGCCAAATTCCTCTATCGGAATTGAAATGCCCTGATTCGTGTGCTGTCTG
CTTTGGGGGAAAGCGTCGCCGCCCTCCTCTGATTAGTTAGCATCTAAATA
GTTGGGGAAAAGAGCGACGCTACAGTCTCGCAGGGTGTGCGTCGTCCACA
AATGGGTCCATTGACTGTGCCTCCTCTGCCCGGCTGGTTGTGTTCCTTAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCTGNNNNNNGCGCCGTCCACAAATGGCTCCCTTGCTTGCCCCCCCC
CCCCCCGGTTGGTTTTTTTCCTCCCCCCCCCCCCCCCCCCCCCCGCTCAC
CCCGCACAAAGACAGCCACGACCAGGTATGATAATACTGCGTATCCCCCC
GCCCTGTCCCTCCACCCGCGACAGCAGTGCCCCCGCTCATACTGCTAGGT
CAGGGCCGGGGTGCCTGCCTCCTCCGGCGCCGGTGCTAGCCCAGTCGGTG
TCGGGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17:39110..43168+

>mRNA_L-elsbetiae_contig17.4682.1 ID=mRNA_L-elsbetiae_contig17.4682.1|Name=mRNA_L-elsbetiae_contig17.4682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1452bp|location=Sequence derived from alignment at L-elsbetiae_contig17:39110..43168+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGCGTTCAACCAGCTCTTTACCAGTCCCCTGCACGCGTTCAACCA
GCTCTTTACCAGTCCCTTGAACCGTGCAGCAGAGATGAAGAAGCAGCTTT
TGGAGCGCGACAGGGATGGCTGGAGCGTCGCCATGCACGCCGTCCGCGCG
GGACACGTGGTCGTGGTGGAGACGGTCCTGGAAGAGGTTCGAGACTCCGG
ATTGAACCGTGCAGCAGAGATGAAGAAGCAGCTTTTGGAGCGCGACAGGG
ATGGCTGGAGCGTCGCCATGCACGCCGTCCGCGCGGGACACGTGGTCGTG
GTGGAGACGGTCCTGGAAGAGGTTCGAGACTCCGGAGCGCGAGCGGCACT
CACGGCTAAGGACTACCTGCAGATGACGCTCACCATGCACGCGGCAGCTG
CGGGTAACGCGGCCATCTTCCAGGAGGTGGTGAAGGCCGTAGACTCGGAT
CTTACGGACGCCGAGGCGCGAGCGGCACTCACGGCTAAGGACTACCTGCA
GATGACGCTCACCATGCACGCGGCAGCTGCGGGTAACGCGGCCATCTTCC
AGGAGGTGGTGAAGGCCGTAGACTCGGATCTTACGGACGCCGAGATGGCG
GAGCACATGGTGCTGAGGTCAGGGGACGACCAGACACTGCTGATGATCGC
CGCGGCCTCCTCCGATAAGATGACCTTCAAGGCGTGTGTCGAAGCCCTGA
GGCTCGCTGTTACCCCGCACGACATGGCGGAGCACATGGTGCTGAGGTCA
GGGGACGACCAGACACTGCTGATGATCGCCGCGGCCTCCTCCGATAAGAT
GACCTTCAAGGCGTGTGTCGAAGCCCTGAGGCTCGCTGTTACCCCGCACG
ACTTTAGGGTGCTGATGAAGGTCAGGGATGCGGATGGCATGACCTTCCTC
ATGCACGCCGCAAACCCAGCTTCCTCCGGCAGCAAGAGCAACAAGAGGCC
CAAGCCGAAGAGGCTTCAGCAAGGCAGCGGCGGCGGCGGCGGTGGCCACG
ACCCCATCTCAAGGTCGTCCACCACCGGGCACATCGGCCTTCATACCACG
GGGCCTTTTCATAGTAGTTTAGGGTGCTGATGAAGGTCAGGGATGCGGAT
GGCATGACCTTCCTCATGCACGCCGCAAACCCAGCTTCCTCCGGCAGCAA
GAGCAACAAGAGGCCCAAGCCGAAGAGGCTTCAGCAAGGCAGCGGCGGCG
GCGGCGGTGGCCACGACCCCATCTCAAGGTCGTCCACCACCGGGCACATC
GGCCTTCATACCACGGGGCCTTTTCATAGTAGCAGTGCCCCCGCTCATAC
TGCTAGGTCAGGGCCGGGGTGCCTGCCTCCTCCGGCGCCGGTGCTAGCCC
AGTCGGTGTCGGGCGGACAGTGCCCCCGCTCATACTGCTAGGTCAGGGCC
GGGGTGCCTGCCTCCTCCGGCGCCGGTGCTAGCCCAGTCGGTGTCGGGCG
GA
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