mRNA_L-elsbetiae_contig16983.4675.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16983.4675.1
Unique NamemRNA_L-elsbetiae_contig16983.4675.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16983.4675.1 vs. uniprot
Match: A0A6H5JV12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV12_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.130e-16
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1 
Query:   76 VNNLLQGSMFAIPSVTKPQAFRVSRDPSDNIVRLQVQARGAEE----------YHEGYMEIMQPGPLPDLRDMPDCPRKTVDEHTIKQHRNCFAASEDRMRVILEHGD---DSITCD----EAKLELEAAAVDLEAS*AVPCDW 456
            + +L+   MF+I  VTKPQAF+VS+DPSD +  +QVQ R  +E          Y  GY+ +M+    PD+RD P  PRK++ + T+ QHR+C  +   R++    H     D +T D        EL  + V+L  S  VP  W
Sbjct:   28 IRDLVHECMFSISHVTKPQAFKVSKDPSDGVATMQVQQRSYKEEWGVINRQGEYGPGYITVMKS--WPDVRDTPSHPRKSLPDATLHQHRHCIESCNARIKNACMHTSSLPDGMTADGLYNSRMEELAESVVELSRSTPVPFGW 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16983.4675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV12_9PHAE3.130e-1636.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16983contigL-elsbetiae_contig16983:354..1321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size499
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16983.4675.1prot_L-elsbetiae_contig16983.4675.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16983 453..1260 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.7868662-UTR-L-elsbetiae_contig16983:353..4521622815705.7868662-UTR-L-elsbetiae_contig16983:353..452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16983 354..452 +
1691683049.433163-UTR-L-elsbetiae_contig16983:353..4521691683049.433163-UTR-L-elsbetiae_contig16983:353..452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16983 354..452 +
1622815705.8528645-UTR-L-elsbetiae_contig16983:1260..13211622815705.8528645-UTR-L-elsbetiae_contig16983:1260..1321Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16983 1261..1321 +
1691683049.4681149-UTR-L-elsbetiae_contig16983:1260..13211691683049.4681149-UTR-L-elsbetiae_contig16983:1260..1321Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16983 1261..1321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.801066-CDS-L-elsbetiae_contig16983:452..5471622815705.801066-CDS-L-elsbetiae_contig16983:452..547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16983 453..547 +
1691683049.4424043-CDS-L-elsbetiae_contig16983:452..5471691683049.4424043-CDS-L-elsbetiae_contig16983:452..547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16983 453..547 +
1622815705.8133929-CDS-L-elsbetiae_contig16983:860..10301622815705.8133929-CDS-L-elsbetiae_contig16983:860..1030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16983 861..1030 +
1691683049.4506686-CDS-L-elsbetiae_contig16983:860..10301691683049.4506686-CDS-L-elsbetiae_contig16983:860..1030Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16983 861..1030 +
1622815705.8271246-CDS-L-elsbetiae_contig16983:1186..12601622815705.8271246-CDS-L-elsbetiae_contig16983:1186..1260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16983 1187..1260 +
1691683049.4591694-CDS-L-elsbetiae_contig16983:1186..12601691683049.4591694-CDS-L-elsbetiae_contig16983:1186..1260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16983 1187..1260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16983.4675.1

>prot_L-elsbetiae_contig16983.4675.1 ID=prot_L-elsbetiae_contig16983.4675.1|Name=mRNA_L-elsbetiae_contig16983.4675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MFAIPSVTKPQAFRVSRDPSDNIVRLQVQARGAEEYHEGYMEIMQPGPLP
DLRDMPDCPRKTVDEHTIKQHRNCFAASEDRMRVILEHGDDSITCDEAKL
ELEAAAVDLEAS*
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mRNA from alignment at L-elsbetiae_contig16983:354..1321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16983.4675.1 ID=mRNA_L-elsbetiae_contig16983.4675.1|Name=mRNA_L-elsbetiae_contig16983.4675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=968bp|location=Sequence derived from alignment at L-elsbetiae_contig16983:354..1321+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCTGGAGCTCTGCATCTCTAATACATGTGATAAACTCGATCTCTCCTT
CTCAAGTAAAGGACATAGATATATCGTCAACAACCTCCTGCAGGGCAGCA
TGTTCGCCATTCCGTCTGTCACCAAGCCACAGGCGTTCCGCGTTTCGAGG
GACCCCTCGGACAACATCGTCAGACTTCAGGTGCAGGCCCGCGGGTACGA
GAACAAGTGGGCTGCGATCGATAGGTATATCGACTCGGCGCGCATATGAT
TGTTTGTGGCCCTTCGAGACCTCGTGTGTTCGGAGGCTTTTGCTATTGAG
TTGGCACTTGCGGGGGTCAGTTGGCACCCGATACGGGCGGGGCCTGCCAC
TTCGTATCTAGCTGTACCTTGTCCGCGAATTCAGGTGTAAACACATACAG
TATAACATATATTCCTAGCGCGGCACACATAAATGCTTGCGATGTAAAAC
AGGGGGGTTGTATCTGACCGTATGCACTTTTGTCTCTTCTTCCTTGGCGC
CAAATAGGGCCGAGGAGTACCACGAAGGATATATGGAGATCATGCAACCC
GGACCGTTGCCCGATCTCCGTGACATGCCAGACTGCCCTCGCAAGACCGT
GGACGAACACACGATAAAGCAGCATCGTAACTGTTTCGCCGCATCAGAGG
ACCGCATGCGCGTCATCCTTGAGCACGGTACGTGTGTCTGTCTGGGAACC
CTCCATCGCTTCCATGTGTTTTTTGGTTATACGTGCTGCTCATCATGTTG
TCTATGTTTGCGAAGACAAATCGTACAATTGATGTATTTGCAGCTCACAA
GACAACCTTTTATGCTGTTCCTTGTATTTACAGGCGACGACTCTATCACG
TGCGACGAGGCTAAGCTCGAGCTGGAGGCCGCGGCGGTGGACCTAGAGGC
GAGCTAAGCGGTACCATGTGATTGGGATTTCGCCTTGTACAAGCTATCTC
CTCTTCACACCACTCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16983:354..1321+

>mRNA_L-elsbetiae_contig16983.4675.1 ID=mRNA_L-elsbetiae_contig16983.4675.1|Name=mRNA_L-elsbetiae_contig16983.4675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig16983:354..1321+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGCCATTCCGTCTGTCACCAAGCCACAGGCGTTCCGCGTTTCGAG
GGACCCCTCGGACAACATCGTCAGACTTCAGGTGCAGGCCCGCGGATGTT
CGCCATTCCGTCTGTCACCAAGCCACAGGCGTTCCGCGTTTCGAGGGACC
CCTCGGACAACATCGTCAGACTTCAGGTGCAGGCCCGCGGGGCCGAGGAG
TACCACGAAGGATATATGGAGATCATGCAACCCGGACCGTTGCCCGATCT
CCGTGACATGCCAGACTGCCCTCGCAAGACCGTGGACGAACACACGATAA
AGCAGCATCGTAACTGTTTCGCCGCATCAGAGGACCGCATGCGCGTCATC
CTTGAGCACGGGCCGAGGAGTACCACGAAGGATATATGGAGATCATGCAA
CCCGGACCGTTGCCCGATCTCCGTGACATGCCAGACTGCCCTCGCAAGAC
CGTGGACGAACACACGATAAAGCAGCATCGTAACTGTTTCGCCGCATCAG
AGGACCGCATGCGCGTCATCCTTGAGCACGGCGACGACTCTATCACGTGC
GACGAGGCTAAGCTCGAGCTGGAGGCCGCGGCGGTGGACCTAGAGGCGAG
CTAAGCGACGACTCTATCACGTGCGACGAGGCTAAGCTCGAGCTGGAGGC
CGCGGCGGTGGACCTAGAGGCGAGCTAA
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