mRNA_L-elsbetiae_contig1696.4667.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1696.4667.1
Unique NamemRNA_L-elsbetiae_contig1696.4667.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1696.4667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1696contigL-elsbetiae_contig1696:20119..20731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size614
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.9138706-CDS-L-elsbetiae_contig1696:20118..204271622815704.9138706-CDS-L-elsbetiae_contig1696:20118..20427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1696 20119..20427 +
1691683048.940625-CDS-L-elsbetiae_contig1696:20118..204271691683048.940625-CDS-L-elsbetiae_contig1696:20118..20427Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1696 20119..20427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.9281254-UTR-L-elsbetiae_contig1696:20427..207311622815704.9281254-UTR-L-elsbetiae_contig1696:20427..20731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1696 20428..20731 +
1691683048.9504125-UTR-L-elsbetiae_contig1696:20427..207311691683048.9504125-UTR-L-elsbetiae_contig1696:20427..20731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1696 20428..20731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1696.4667.1prot_L-elsbetiae_contig1696.4667.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1696 20119..20427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1696.4667.1

>prot_L-elsbetiae_contig1696.4667.1 ID=prot_L-elsbetiae_contig1696.4667.1|Name=mRNA_L-elsbetiae_contig1696.4667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
LVRHVATKPRVGSSRQRLGGGGGGGHGRYSFIRRIAAISWPPLSRKPGSW
SWLCTRHTGGDVAKVVPALFRSVWQYTSICWSCSALMNTGHWAKIHSSKC
SH*
back to top

mRNA from alignment at L-elsbetiae_contig1696:20119..20731+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1696.4667.1 ID=mRNA_L-elsbetiae_contig1696.4667.1|Name=mRNA_L-elsbetiae_contig1696.4667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=613bp|location=Sequence derived from alignment at L-elsbetiae_contig1696:20119..20731+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGTTCGGCATGTCGCCACGAAGCCCCGTGTCGGTTCTAGTCGGCAGCG
GCTGGGGGGCGGCGGCGGCGGCGGCCATGGGCGGTATTCATTCATCCGAC
GTATAGCAGCGATATCTTGGCCTCCTCTCTCGCGCAAGCCCGGCTCGTGG
AGTTGGCTCTGCACCAGGCACACGGGTGGTGATGTTGCGAAGGTGGTGCC
TGCGCTTTTCAGGTCGGTGTGGCAGTACACATCAATATGTTGGTCTTGTT
CCGCACTGATGAACACTGGACACTGGGCGAAAATCCACTCGAGCAAATGT
TCTCACTGACAACCAAGCGGTAGAATGGTGGTTGGTTTCAGGGTGCAGCG
CCTCCTTGACTCCGAAACCTTTGAAATAACTAAAGCATTGAGTGAGTTGG
AAATGCGTGCTTAGGCTCTCTCTCGCGCATCCTGTGGCGTCAAGTGGCAT
GTAGCGGGGACTGCAACAGGCCCCACAGCCGCGACCGATCCGATCAGCAA
GAAGAGTAATTGGTTGAACGCCGCGTTGTCATTTCACCCATGAGATCAAG
TCGTTTTGTAGCCCGACCCAACTCTTATGTAGAGACTTTTGGCTCTCCTA
CTGTATTGCTGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1696:20119..20731+

>mRNA_L-elsbetiae_contig1696.4667.1 ID=mRNA_L-elsbetiae_contig1696.4667.1|Name=mRNA_L-elsbetiae_contig1696.4667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1696:20119..20731+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGTTCGGCATGTCGCCACGAAGCCCCGTGTCGGTTCTAGTCGGCAGCG
GCTGGGGGGCGGCGGCGGCGGCGGCCATGGGCGGTATTCATTCATCCGAC
GTATAGCAGCGATATCTTGGCCTCCTCTCTCGCGCAAGCCCGGCTCGTGG
AGTTGGCTCTGCACCAGGCACACGGGTGGTGATGTTGCGAAGGTGGTGCC
TGCGCTTTTCAGGTCGGTGTGGCAGTACACATCAATATGTTGGTCTTGTT
CCGCACTGATGAACACTGGACACTGGGCGAAAATCCACTCGAGCAAATGT
TCTCACTGATTGGTTCGGCATGTCGCCACGAAGCCCCGTGTCGGTTCTAG
TCGGCAGCGGCTGGGGGGCGGCGGCGGCGGCGGCCATGGGCGGTATTCAT
TCATCCGACGTATAGCAGCGATATCTTGGCCTCCTCTCTCGCGCAAGCCC
GGCTCGTGGAGTTGGCTCTGCACCAGGCACACGGGTGGTGATGTTGCGAA
GGTGGTGCCTGCGCTTTTCAGGTCGGTGTGGCAGTACACATCAATATGTT
GGTCTTGTTCCGCACTGATGAACACTGGACACTGGGCGAAAATCCACTCG
AGCAAATGTTCTCACTGA
back to top