mRNA_L-elsbetiae_contig16934.4649.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16934.4649.1
Unique NamemRNA_L-elsbetiae_contig16934.4649.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16934.4649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16934contigL-elsbetiae_contig16934:1561..2348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.5445037-UTR-L-elsbetiae_contig16934:1560..18201622815703.5445037-UTR-L-elsbetiae_contig16934:1560..1820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16934 1561..1820 +
1691683048.2792213-UTR-L-elsbetiae_contig16934:1560..18201691683048.2792213-UTR-L-elsbetiae_contig16934:1560..1820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16934 1561..1820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.5558403-CDS-L-elsbetiae_contig16934:1820..23481622815703.5558403-CDS-L-elsbetiae_contig16934:1820..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16934 1821..2348 +
1691683048.288683-CDS-L-elsbetiae_contig16934:1820..23481691683048.288683-CDS-L-elsbetiae_contig16934:1820..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16934 1821..2348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16934.4649.1prot_L-elsbetiae_contig16934.4649.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16934 1821..2348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16934.4649.1

>prot_L-elsbetiae_contig16934.4649.1 ID=prot_L-elsbetiae_contig16934.4649.1|Name=mRNA_L-elsbetiae_contig16934.4649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MMDLKNKRCGQQGCTKQPVYGVDGSGKPEFCSEHKKDGMMDLKNKRCGQQ
GCNKQPVYGVDSSGKPEFCSAHKNVGMANVISRRCGQQGCTKQPVYGVDG
SGKREFCSEHKKDGMANVISRRYDQSVPPRVTGGNKKAGWAPTDLAVAPT
PVEAPRDGGATPSEDDQRLLEPGGVK
back to top

mRNA from alignment at L-elsbetiae_contig16934:1561..2348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16934.4649.1 ID=mRNA_L-elsbetiae_contig16934.4649.1|Name=mRNA_L-elsbetiae_contig16934.4649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=788bp|location=Sequence derived from alignment at L-elsbetiae_contig16934:1561..2348+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGAGTTCTGCTCTGCACACAAGAAGGACGGGATGATTGACTTGAACAG
CAAGAGGTGCGGCCAACAAGGTTGCACCAGGTGCCCGGCATATGGCATGG
ATGGCAGCGGCAAGCGGGAGTTCTGCTCTGCGCACAAGAAGGAAGGGATG
GTGGACTTGAAGAACAAGAGGTGCGGCCAACAAGGTTGCACCAAGCACCC
GGTATATGGCGTGATGGTAGCGGCAAGCGGGAGTTCTGCTCTGCACACAA
GAAGGACGGGATGATGGACTTGAAGAACAAGAGGTGCGGCCAACAAGGTT
GCACCAAGCAGCCGGTATATGGCGTGGACGGTAGCGGCAAGCCGGAGTTC
TGCTCTGAACACAAGAAGGACGGGATGATGGACTTGAAGAACAAGAGGTG
CGGCCAACAAGGTTGCAACAAGCAGCCGGTATATGGCGTGGATAGTAGCG
GCAAGCCGGAGTTCTGCTCTGCACACAAAAACGTCGGGATGGCGAACGTC
ATTAGTAGGAGGTGCGGCCAACAAGGTTGCACCAAGCAGCCGGTATATGG
CGTGGATGGTAGCGGCAAGCGGGAGTTCTGCTCTGAACACAAGAAGGACG
GGATGGCGAACGTCATTAGTAGGAGGTACGACCAATCCGTTCCTCCAAGG
GTTACGGGGGGCAACAAGAAGGCCGGCTGGGCTCCCACCGACTTGGCTGT
GGCTCCAACTCCAGTAGAAGCACCGCGAGACGGGGGGGCGACCCCATCAG
AGGACGACCAACGACTTTTGGAGCCAGGCGGCGTGAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16934:1561..2348+

>mRNA_L-elsbetiae_contig16934.4649.1 ID=mRNA_L-elsbetiae_contig16934.4649.1|Name=mRNA_L-elsbetiae_contig16934.4649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig16934:1561..2348+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGACTTGAAGAACAAGAGGTGCGGCCAACAAGGTTGCACCAAGCA
GCCGGTATATGGCGTGGACGGTAGCGGCAAGCCGGAGTTCTGCTCTGAAC
ACAAGAAGGACGGGATGATGGACTTGAAGAACAAGAGGTGCGGCCAACAA
GGTTGCAACAAGCAGCCGGTATATGGCGTGGATAGTAGCGGCAAGCCGGA
GTTCTGCTCTGCACACAAAAACGTCGGGATGGCGAACGTCATTAGTAGGA
GGTGCGGCCAACAAGGTTGCACCAAGCAGCCGGTATATGGCGTGGATGGT
AGCGGCAAGCGGGAGTTCTGCTCTGAACACAAGAAGGACGGGATGGCGAA
CGTCATTAGTAGGAGGTACGACCAATCCGTTCCTCCAAGGGTTACGGGGG
GCAACAAGAAGGCCGGCTGGGCTCCCACCGACTTGGCTGTGGCTCCAACT
CCAGTAGAAGCACCGCGAGACGGGGGGGCGACCCCATCAGAGGACGACCA
ACGACTTTTGGAGCCAGGCGGCGTGAAGATGATGGACTTGAAGAACAAGA
GGTGCGGCCAACAAGGTTGCACCAAGCAGCCGGTATATGGCGTGGACGGT
AGCGGCAAGCCGGAGTTCTGCTCTGAACACAAGAAGGACGGGATGATGGA
CTTGAAGAACAAGAGGTGCGGCCAACAAGGTTGCAACAAGCAGCCGGTAT
ATGGCGTGGATAGTAGCGGCAAGCCGGAGTTCTGCTCTGCACACAAAAAC
GTCGGGATGGCGAACGTCATTAGTAGGAGGTGCGGCCAACAAGGTTGCAC
CAAGCAGCCGGTATATGGCGTGGATGGTAGCGGCAAGCGGGAGTTCTGCT
CTGAACACAAGAAGGACGGGATGGCGAACGTCATTAGTAGGAGGTACGAC
CAATCCGTTCCTCCAAGGGTTACGGGGGGCAACAAGAAGGCCGGCTGGGC
TCCCACCGACTTGGCTGTGGCTCCAACTCCAGTAGAAGCACCGCGAGACG
GGGGGGCGACCCCATCAGAGGACGACCAACGACTTTTGGAGCCAGGCGGC
GTGAAG
back to top