mRNA_L-elsbetiae_contig1691.4632.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1691.4632.1
Unique NamemRNA_L-elsbetiae_contig1691.4632.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A6H5K9Y6_9PHAE (dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9Y6_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 1.800e-133
Identity = 199/232 (85.78%), Postives = 206/232 (88.79%), Query Frame = 2 
Query:  386 VLMAGTKEAGGPLAGPVKRGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGVAGKKIASLWPRGE 1081
             +MA TK+A    AGP KRGAFILFEGVDRCGKTTQANLLV+SLK AGHDACFMRFPDRTTPIGQMINGFLQNTT IDDRCVHLLFSANRWEAESKIRE L  GTTVVCDRYAYSGVAFSASKPGL V WCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEK EFQRTVRATFLALMEEDKASGV WQLIDANR I SIQDEI+++  S+VG V GK I SLW R E
Sbjct:   11 AVMASTKDA---PAGPAKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGQMINGFLQNTTGIDDRCVHLLFSANRWEAESKIRELLKVGTTVVCDRYAYSGVAFSASKPGLSVRWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDANREIGSIQDEIQKIGTSVVGEVEGKDIGSLWSRKE 239
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BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A835ZMW1_9STRA (dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMW1_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.360e-85
Identity = 139/230 (60.43%), Postives = 169/230 (73.48%), Query Frame = 2 
Query:  389 LMAGTKEA-GGPLAGPVKRGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGVA--GKKIASLW 1069
            + A T+ A  G   GP +RGAFILFEGVDRCGKTTQ   LV  LK+ GHDA  MRFPDRTT IGQMIN +LQ+T ++DD+C+HLLFSANRWEA S I  RL AG T+VCDRYAYSGVAFSA+KPGL V WCK PD+GLPAPD +++LD++VE AM+RGQFGEERYEKA+FQR VR  F+AL E D   G  W ++DA  + + +   +   AA  +  V   G++I  LW
Sbjct:    1 MTAATEAAPAGDSNGP-QRGAFILFEGVDRCGKTTQCERLVKRLKEDGHDAVHMRFPDRTTAIGQMINAYLQSTAEMDDQCIHLLFSANRWEALSTIERRLAAGLTIVCDRYAYSGVAFSAAKPGLTVDWCKAPDKGLPAPDVVIYLDLAVEAAMERGQFGEERYEKADFQRRVRDNFMALREAD---GERWAVVDAAASRDEVAAAVHAAAAKAIADVKEEGRQIQKLW 226
[Close]
BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A7S2H363_9STRA (dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H363_9STRA)

HSP 1 Score: 255 bits (652), Expect = 9.330e-78
Identity = 130/226 (57.52%), Postives = 152/226 (67.26%), Query Frame = 2 
Query:  434 VKRGAFILFEGVDRCGKTTQANLLVDSLKDAGHDA--------------CFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGVAGKKIASLW 1069
            V RGAFIL EGVDRCGKTTQ  +L D+L  A H A                MRFPDRTT IGQMING+L N  D+DDR +HLLFSANRWEA +KI + L AGTT+VCDRYAYSGVAFS +K GL V WC  PDRGLP PD +++LD+SVEDAM+RG FGEERYEK EFQR V   F A+M  D      W ++DA ++I  +Q EI  +A +      GK I  LW
Sbjct:   42 VGRGAFILLEGVDRCGKTTQTKMLADTLSAARHAAPSGAIDDQNMPPRATLMRFPDRTTTIGQMINGYLANGVDMDDRAIHLLFSANRWEARAKIEDTLRAGTTIVCDRYAYSGVAFSGAKEGLSVEWCMAPDRGLPCPDCVIYLDLSVEDAMQRGAFGEERYEKEEFQRRVSDNFKAIMASDSTP---WHVVDATKSIAEMQAEILAIAEATQRQCRGKPITGLW 264
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BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A2R5GGP8_9STRA (dTMP kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGP8_9STRA)

HSP 1 Score: 236 bits (602), Expect = 4.010e-71
Identity = 112/216 (51.85%), Postives = 153/216 (70.83%), Query Frame = 2 
Query:  422 LAGPVKRGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGVAGKKIASLW 1069
            ++G   RGAFI+FEGVDRCGKTTQ   LV +L+    D    RFPDRTT  G++I+ +L+N  ++DD  VHLLFSANRWE+   IR++L AGTT++ DRYA+SGV FSA+K G+++ WCK PD GLPAPD ++FL +++ DAMKRGQFGEERYEK +FQ  V   F+ +  +       W++IDA R I++I +EI+ +A  I+   A K + +LW
Sbjct:    3 VSGMTARGAFIVFEGVDRCGKTTQTQRLVAALQSRKVDVELCRFPDRTTATGKIIDSYLKNGVELDDHAVHLLFSANRWESAQAIRKKLAAGTTLIVDRYAHSGVCFSAAKQGMDIEWCKAPDAGLPAPDAVIFLKLAIADAMKRGQFGEERYEKQDFQTKVLDNFMQMKTDS------WRVIDAKRPIDAIAEEIETLALDIINSCADKPLETLW 212
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BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A7S2L3C4_9STRA (dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3C4_9STRA)

HSP 1 Score: 235 bits (599), Expect = 5.290e-70
Identity = 118/222 (53.15%), Postives = 154/222 (69.37%), Query Frame = 2 
Query:  431 PVKRGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKP-------GLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASG-VEWQLIDANRAIESIQDEIKQVAASIVGGV-AGKKIASLW 1069
            P KRGAFIL EGVDRCGKTTQ  LL+  L   G  A  MRFPDRTT +GQ+ING+L  T +++DR VHLLFSANRWEA + + + L  GTT+VCDRYAYSGVAFS++K         L + WCK  D GLPAPD ++FLD++ E+A KRG +G ERYEK E Q  VR  F  L ++D+ASG V W+++DA++++E +Q +I Q+    +  V AG  +  +W
Sbjct:   13 PAKRGAFILLEGVDRCGKTTQCGLLLQHLLALGITALAMRFPDRTTMVGQLINGYLSQTREMEDRAVHLLFSANRWEASNSLAQHLANGTTIVCDRYAYSGVAFSSAKSYPDARHKELSIDWCKACDIGLPAPDVVIFLDLTQEEAQKRGGYGGERYEKKEMQMRVRQRFDELQKDDEASGRVPWKVVDASQSVEDVQRDINQIVEETLQRVNAGADLKKMW 234
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BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: L1JWU7_GUITC (dTMP kinase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JWU7_GUITC)

HSP 1 Score: 232 bits (592), Expect = 1.180e-69
Identity = 113/212 (53.30%), Postives = 150/212 (70.75%), Query Frame = 2 
Query:  440 RGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGVAGKKIASLWPR 1075
            RGA I+ EG+DR GK+TQ   LV+ L   G  A  M FPDRTT +G +IN +LQ+  D+DD  +HLLFSANRWEA   IR+RL +G T++ DRYAYSGVAFSA+K  L++ WCK PDRGLPAPD +++LD+S + A +RG +GEERYEK EFQ+ VR  F ALM ++ A    W+ +DAN+ ++ + +EI+ +A  IV  V  K I SLW +
Sbjct:    4 RGALIVLEGLDRSGKSTQVIRLVEKLVSMGKKASKMNFPDRTTTVGGLINEYLQSGKDLDDAVIHLLFSANRWEATRSIRDRLSSGETLIVDRYAYSGVAFSAAKGTLDIEWCKGPDRGLPAPDCVIYLDVSSDVAKQRGGYGEERYEKEEFQKKVRTCFEALMSQEPAM---WRRVDANKTMDEVTEEIEGIATKIVDQVTDKPIGSLWTK 212
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BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A7S3H922_9STRA (dTMP kinase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H922_9STRA)

HSP 1 Score: 231 bits (590), Expect = 6.190e-69
Identity = 111/211 (52.61%), Postives = 154/211 (72.99%), Query Frame = 2 
Query:  440 RGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASG-VEWQLIDANRAIESIQDEIKQVAASIVGGVAGKKIASLW 1069
            RGAFILFEGVDRCGKTTQ  +L D L  +  +   +RFP+R + IGQ+I+ +LQ+T++++D+ +HLLFSANRWE    I  +L  G T++CDRYAYSGVAF+++K GL++ WCK  DRGLPAPD I++LDI VEDA KRG FGEERYEK +FQ+ VR  F+ L  ED+AS  V W +++A ++I+ +  EIK +  +++  +  K +  LW
Sbjct:   34 RGAFILFEGVDRCGKTTQVGMLKDYLTKS-RETEQIRFPERKSTIGQLIDSYLQSTSNMNDQSIHLLFSANRWEQSDSIESKLANGNTLICDRYAYSGVAFTSAK-GLDLDWCKSCDRGLPAPDCIIYLDIPVEDAAKRGNFGEERYEKIDFQKKVREQFMLLQSEDQASAAVPWHVVNAAQSIDEVHSEIKNIVDNVLASLDDKPVGKLW 242
[Close]
BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A1Z5K5E1_FISSO (dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5E1_FISSO)

HSP 1 Score: 230 bits (587), Expect = 1.290e-68
Identity = 112/214 (52.34%), Postives = 152/214 (71.03%), Query Frame = 2 
Query:  440 RGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGVAGKKIASLWPRGE 1081
            RGAF L EGVDRCGKTTQ   L+  L  AG  A  MRFP+RTT  GQ+I+ +LQ T+++DDR +HLLFSANRWE+   I E+L AGT++VCDRYAYSGVAFSASK  +++ WC+ PDRGLPAPD ++FLD+S E A +RG +G+ERYEK E Q+ VR  F  L + D   GV+W+ ++A + ++ ++D+I  +A   +  V   ++  LW  G+
Sbjct:   11 RGAFFLLEGVDRCGKTTQCQRLLQRLLQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADMIVEQLKAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQQRVRQRFQELSQLD--DGVQWKFVNAAQTMDQVEDDIWSIAQQTLEQVQ-PEVRQLWQSGD 221
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BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: W7TN04_9STRA (dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN04_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.690e-68
Identity = 115/213 (53.99%), Postives = 146/213 (68.54%), Query Frame = 2 
Query:  440 RGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGVA--GKKIASLWP 1072
            RGAFI+ EGVDRCGKTTQ   +V +L   G  A  +RFPDRTT IGQMIN +L N TD+DDR +HLLFSANRWEA + +R +L AG T+VCDRYAYSGVAFSA+K G++  WCK  DRGLP PD +++LDIS E A KRG++GEERYE    Q  VR  F  LME D      W ++DA  ++E + + + +V  +    V   G ++ +LWP
Sbjct:  112 RGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSI----WHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWP 320
[Close]
BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Match: A0A2P6TY72_CHLSO (dTMP kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TY72_CHLSO)

HSP 1 Score: 229 bits (584), Expect = 1.160e-67
Identity = 117/217 (53.92%), Postives = 150/217 (69.12%), Query Frame = 2 
Query:  431 PVKRGAFILFEGVDRCGKTTQANLLVDSLKDAGHDACFMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLMAGTTVVCDRYAYSGVAFSASK--PGLEVGWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIESIQDEIKQVAASIVGGV--AGKKIASLW 1069
            P  RGAFI+FEG DR GK+TQ  +LV+ L+ AG  A   RFPDRTT IG+MIN +L +  DIDD  VHLLFSANRWE   ++  +L AGTT+V DRYAYSGVAF+A+K  PGL+  WC  PD GLPAPD + FL ++VE A  RG +GEERYEKA+FQR V   F A+       G  W++IDA+++IE IQ ++++ AA++V      G+ I  LW
Sbjct:   44 PQPRGAFIVFEGADRAGKSTQCQMLVEHLQAAGVAAELWRFPDRTTAIGKMINSYLTSQADIDDAAVHLLFSANRWEKREELLRKLRAGTTLVVDRYAYSGVAFTAAKGAPGLDRAWCMSPDEGLPAPDAVFFLSLTVEQAAARGGYGEERYEKADFQRKVLEQFQAMR------GSSWRVIDASQSIEDIQQQLREQAAAVVARCQRGGEPIKQLW 254
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1691.4632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y6_9PHAE1.800e-13385.78dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835ZMW1_9STRA2.360e-8560.43dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2H363_9STRA9.330e-7857.52dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687... [more]
A0A2R5GGP8_9STRA4.010e-7151.85dTMP kinase n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
A0A7S2L3C4_9STRA5.290e-7053.15dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=1... [more]
L1JWU7_GUITC1.180e-6953.30dTMP kinase n=2 Tax=Guillardia theta TaxID=55529 R... [more]
A0A7S3H922_9STRA6.190e-6952.61dTMP kinase (Fragment) n=1 Tax=Spumella elongata T... [more]
A0A1Z5K5E1_FISSO1.290e-6852.34dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519... [more]
W7TN04_9STRA3.690e-6853.99dTMP kinase n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A2P6TY72_CHLSO1.160e-6753.92dTMP kinase n=1 Tax=Chlorella sorokiniana TaxID=30... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1691contigL-elsbetiae_contig1691:12478..18234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue1.7e-109
Seed eggNOG ortholog2880.D7FSC0
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dTDP metabolic process
EggNOG OGsCOG0125@1,KOG3327@2759
EC2.7.4.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-20_004950.1
Exons6
Model size1693
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1691.4632.1prot_L-elsbetiae_contig1691.4632.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1691 13084..17843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.456983-UTR-L-elsbetiae_contig1691:12477..130831622815702.456983-UTR-L-elsbetiae_contig1691:12477..13083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1691 12478..13083 -
1691683047.614866-UTR-L-elsbetiae_contig1691:12477..130831691683047.614866-UTR-L-elsbetiae_contig1691:12477..13083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1691 12478..13083 -
1622815702.5353794-UTR-L-elsbetiae_contig1691:17843..182341622815702.5353794-UTR-L-elsbetiae_contig1691:17843..18234Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1691 17844..18234 -
1691683047.6880684-UTR-L-elsbetiae_contig1691:17843..182341691683047.6880684-UTR-L-elsbetiae_contig1691:17843..18234Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1691 17844..18234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.469929-CDS-L-elsbetiae_contig1691:13083..132271622815702.469929-CDS-L-elsbetiae_contig1691:13083..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 13084..13227 -
1691683047.6282413-CDS-L-elsbetiae_contig1691:13083..132271691683047.6282413-CDS-L-elsbetiae_contig1691:13083..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 13084..13227 -
1622815702.4812093-CDS-L-elsbetiae_contig1691:13510..136001622815702.4812093-CDS-L-elsbetiae_contig1691:13510..13600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 13511..13600 -
1691683047.6386187-CDS-L-elsbetiae_contig1691:13510..136001691683047.6386187-CDS-L-elsbetiae_contig1691:13510..13600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 13511..13600 -
1622815702.4914067-CDS-L-elsbetiae_contig1691:15365..154601622815702.4914067-CDS-L-elsbetiae_contig1691:15365..15460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 15366..15460 -
1691683047.6482391-CDS-L-elsbetiae_contig1691:15365..154601691683047.6482391-CDS-L-elsbetiae_contig1691:15365..15460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 15366..15460 -
1622815702.5044231-CDS-L-elsbetiae_contig1691:16250..163421622815702.5044231-CDS-L-elsbetiae_contig1691:16250..16342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 16251..16342 -
1691683047.6581218-CDS-L-elsbetiae_contig1691:16250..163421691683047.6581218-CDS-L-elsbetiae_contig1691:16250..16342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 16251..16342 -
1622815702.5146427-CDS-L-elsbetiae_contig1691:16736..168451622815702.5146427-CDS-L-elsbetiae_contig1691:16736..16845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 16737..16845 -
1691683047.6666026-CDS-L-elsbetiae_contig1691:16736..168451691683047.6666026-CDS-L-elsbetiae_contig1691:16736..16845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 16737..16845 -
1622815702.5246365-CDS-L-elsbetiae_contig1691:17677..178431622815702.5246365-CDS-L-elsbetiae_contig1691:17677..17843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 17678..17843 -
1691683047.6767225-CDS-L-elsbetiae_contig1691:17677..178431691683047.6767225-CDS-L-elsbetiae_contig1691:17677..17843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 17678..17843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1691.4632.1

>prot_L-elsbetiae_contig1691.4632.1 ID=prot_L-elsbetiae_contig1691.4632.1|Name=mRNA_L-elsbetiae_contig1691.4632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
MAGTKEAGGPLAGPVKRGAFILFEGVDRCGKTTQANLLVDSLKDAGHDAC
FMRFPDRTTPIGQMINGFLQNTTDIDDRCVHLLFSANRWEAESKIRERLM
AGTTVVCDRYAYSGVAFSASKPGLEVGWCKDPDRGLPAPDKILFLDISVE
DAMKRGQFGEERYEKAEFQRTVRATFLALMEEDKASGVEWQLIDANRAIE
SIQDEIKQVAASIVGGVAGKKIASLWPRGEA*
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mRNA from alignment at L-elsbetiae_contig1691:12478..18234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1691.4632.1 ID=mRNA_L-elsbetiae_contig1691.4632.1|Name=mRNA_L-elsbetiae_contig1691.4632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5757bp|location=Sequence derived from alignment at L-elsbetiae_contig1691:12478..18234- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCTTGGGCACGCCGCTGTATCACAAGAGTGAAGAGTCTGCCGCCCT
GTCTCGTCTCTGCTCTGTCTTCGCGGGGTGCTACCCCCCCCTCACCGTAT
ATTTCAAATTTATCATGATACGGAGCCCCATCGCGAGAACCGACGAGAGG
ACGAGAGGTCGTCTCTAGCTGTAGCCCTACAGCCTACAAGGCGCGCAGAG
TTTGACAAGGCAAGAAAATTCTTCGAATCGCCTTCACAGCTGCCACGGCG
TTGCTTTTCGGTCCCCGACAAGTCCTCGCAGCGGCAGCAGAAAGAGGCAG
GACGGCAGCGGCATCATTTGTTTGCACTCGGCACCATCGATCACCCCCCG
CTGCCGAAGTAGCCGATAGAGATCATAGGGCCAGAGTGCTCATGGCGGGC
ACGAAAGAGGCTGGTGGGCCTCTTGCTGGGCCGGTTAAAAGGGGGGCGTT
TATCCTGTTCGAAGGCGTGGACAGGTGCGGGAAGACGACGCAGGCGAACC
TGTTGGTCGACAGCCTCAAGGACGCGGGTCATGACGCGTGCTTCATGCGC
TTCCCAGGTGAGCTACTCCGCTTCCCGTAGACTTTGCTGTGCAGGTGTAC
CCGTTTAGAGATGAGTATGGCTGACGCACAGCAGATTTTATCAGTTTTGT
GCACAGCAGTGACCTAACCTACATAAATACAATGATAGATTTGAACGGGA
AAACTACTGTTCCGATATGTCATCAGTAGGCTGTTGGTACTCAATGGCCC
AAACGAACGTCAGGATGACAGCAGCTGCTCTTGCAGTTGAATAAAAACAC
GTCAGTAGCAGCAGCTGTTCGGTACAAATAATAACATACGGCTGAGGGGC
ACAGACATGCGCAGTTGTGTTGACCTGCACAGCTCCGTGTGACAAAGGCG
GAGCGTGTTGATCAAGGGCGGAGCGCCCACACAGAAGCACCCGGTTGATG
CTGTTGCTGTGCTTAGGAGGGCAGCTGTTACGTCTGATCTATAACGTGGT
GATTAATTAAGGACGGGACCTGCTTTTTGCGGGAAAAGAGGCGTTCGAGT
TCAGAATCTTTAGTTCAAAGATCTGGGTTATTATTTTTTCTTTCGTCTTG
CATCACCCCCGTCCCCTGTGCTATCATGAGCTCGCTCCGAAGGGTGATCT
TGTACATAGATACACATACCTCTGCTAAGGCGCTGACTTGGAACAATTTA
AAAACGGTTCAAGTGGTAGACTAGACTTGATGGTATTTTAGCCAGCAGCA
GATGGGAGAGGCCCGCTTTCAGCGGAGAGGCTTGCTGTTTGCAGGAGTAG
GGCCTGATATTTTTTTCTGTCTGCCGAATCGAAACTCAAAGCAACATCCT
TCTGCCCCCGACGTTGGCGATTGCTTGCCCTCCGCGAAGACCGAACAACA
CCTATTGGGCAGATGATCAACGGCTTCCTGCAGAACACCACCGACATCGA
CGATCGCTGTGTGCACCTTCTCTTCTCGGCTAACCGCTGGGAAGCAGAGT
AAGTTATATACCTACCTACAGAGTTATGTACCTACCTACAAACGCCTTCG
AGACGTTGGTTGACGATCGTAATTTCCACAGCAGTCGGCGAGTAATCAAT
TGTGCATGATGTGTGTGCCGCAGCAGAAGAAAGCTGTCTGTCGACGGTGT
CTTCCAGTTGTAGTAAAGGCAGCATCTCATAACTTGGGGGAGCACGCCCC
CGATCGACACCACAGACACCCAGCGCATGCCCGCGAACACCAGCGCCCAC
CAACCGTCCACGTCTGTGTTGTCTAGTCGACACAATCGAGCTGCGCCTCT
GTTTCTGCTCAGCGGTACCGTGTCGCCTCGCAGAAGGCGAACTGCAGACT
TGCAAATGTGGCTCTCACGCACACCTCCGCACCCGTGGGCAGATCGAAAA
TTCGAGAACGGCTGATGGCGGGCACCACGGTCGTATGTGACCGCTACGCA
TACAGCGGGGTCGCCTTTTCAGCTTCCAAGCCCGGTGAGCACTGCCGGCC
ACGACACTCTATTCTTGGATTGCTCATCGCACGTGCCAAGTTGTGTCCGA
TATCGTATCTAGGACTGTCGCAGAAGAAATCGTCGCTTTTATGTATGGTA
TGTAGCTTGCTGCTTCGCGATTGGGTTTGGTTGTGGGCGTGGCGCCCTTC
TACTGGTGTCCCCCCGAGGTCCACGAGCTTTTGTGTAACCTTTCGCACTT
TGGTTAAGTTGTACTGGTACACGATATCCACTGAGATAACAGTCAGCGCT
GACTGGTAGTCCAGTGGTCTTGGAATTTCACCCCCAGGGTTGCCGTCCCT
GTGGTCAGCGCTGTCTTGCCCGACACTTCCACTTCGGTACAAGAGGTTCA
TCGGCTAGGCCAGTTTCTTTAGGCCTATTTTCCAGTTTCTTTAAGAAGAA
GGAAAAATGCTCAGGGAGAAATTCGAACCCTGGCGTTAGCTTTTGTTGGA
AACCGTCTTGTTGAGAAAAGCTCGGGGATTTAGCGCTTTCTGCGAGGGAA
CAGACGCGCCCTACATACATTACGTTTCCCCCCAACTTCAAATCGTTCCA
GAATTGTACGGCGTGTCTGAGAAGGTCTCAGAAGGCCTGAACGCAGCGGC
ATTGTCCGCACGCTGCACGCATGTACACAGCAGGCTTGCTCCTTTGCCCC
CCCCTCCATTCACACAATGAAGGGAAAAGGAATCACGGTGACTGAACGAT
CATATTTGGCTTGTCATCAACCCGAAAAAGTCGACGGACGGTATGCCTGG
CTTGTCTCAAACCGCTACGGGCAGGACTCGAGGTGGGGTGGTGCAAAGAC
CCCGACCGAGGACTGCCGGCACCGGACAAGATCTTGTTCCTCGACATCTC
CGTAGAGGATGCTATGAAGGTGTGTTTCAATCCCCCTTATGGCGCGCCCA
TGCTTTCGTTCGGCTGCAGACGGGATGCTGGTGTCAGAGATGAAGAATCG
CCCCGCCCAGGTCTTGTCCACGAGTACCGTACCGTGCTATTTATTATCCT
CTGTCAACTTTCTAGGAGCACAAGGCCTGCAGCGCATAATGGCAGAAGAC
ATGTATGTATTGTGACGTGGGTGAACCGCAAGTGCAGTCAGGCTGTCGGT
GTCGGCCAATCACAGGACATAACCTGTTTCAGTTCGGAAAGAGAACCTAC
TACATGTCCGAGCAGACGTGGGCACGTAGCTCCACCCACAGCACACGCCA
GAGCACGAAACTGACGGGGGGGTGTGCGTCTTTGATTTATCTCGAAAAAA
AAACTGTGCAGGTCAGCACGAAAATATTACGCTTTAGAGCTCGGAAATGG
CTCAGGCGGTGAACCGGCAAGGAAACATGCCATATAGATGTATTACGCAC
GCACCTGCTGTGTGTGGTGGTATACTGGGTTTGGTTCAGACCCTTTGCTT
GCAGTCTGCCTGTGCTGAGGGCGAGGGTCAAACGACCCCCAAGATTCCGA
TGCTCGCTTGTGGCACCTTGTAACCGTTGTGTTTGGGAGGGCGTCTTGCA
ATTGCCCAGCATGTCTACGACTGAAAGTAGGCGTGGTATTTTCGTAGCAC
CCGGCCGCCCGTTTGTGGGTTCGAGCTCGCCCGGTAGCGCAAGAAAACGG
TGATCGTGTTGGAGCATGTTCTCAGACAATTTCCAAGAGGAAACCAGATT
CTCTCTCCCGGGGGGGGGTGTTGTCTTGTGTGGTTGTTAGACGGGGTGTT
ATCTTGTGGCGTCGGGTCACATCCTCTGGTACCTAAAAAGCTCTGACACG
TGCTACAATACCGAGCACTTGTGGAGGTAGACGATTTGTTTTAATTTTTG
AAAAACAATCTGCTGTCTTCACCTCAACACTACCCAGCCATCGGCCCTGG
GGCACCGATCACCATTGGGCCCCTTCAAGCGTGTGCTCCATTGTGATTCC
TGTGAGCGTGCGAGTTGGGTGGGGCATGGGCGCGGTGGGCAAATCAATCT
ACTCTTTGAGATGACGGCGATCATGACCACAAAATAAGTCAATCGCCAAA
AACACGGTGGCTTGTGAAGCCGAAATACACCAAGCAGATGCACACACGCA
CGCTCCGACGAAACAGCAGTCAGTGTGAGTAGGTCTATCAGCTCATCTGG
TCAGGCTCGTCTGAATCACCTCGCGAACGAAGAGAAGAGCGTGAGAAGAG
AGGGCCGGTGCGCGGGAGAGAAAAGGATCTCGGGAAGAGAGGTGCTGGGC
ATCAGTCCGTATTTTTCGCGTTTTCGAGCATGTTTTTCGCAACCATTTGG
GCGTGAGTGGAAGATACGCGCTACCCTCAGGCGTGTAGGTGGCATATCTG
TGTGCGAAGGCATGTGCACGGGATTGGGAACGCACATAACTTTCGTCTGT
GTAGAGTAGTTCGCGATCGAAATTTGGTTTCGTTTTTGACCGGTCCTTTT
TTGGAAGAGACCTCCATACCATGATCTCCGTACCATATTCCAGTCAGTCA
GATTTTTTAGCCCAGGGCTGAACCCAATTTCCAAGGAAAATTGGAATTTG
TTCATATGCACGGTAGTGATTCTGAACGCCTACCTGCCCGTCCCTTTTCT
CGAATACTCTTTTTTTCTTTTTTTTCCCTCCCATTGTTGGCTTATTTGTT
GCTCGTCGGCGATGTTTTTGTGGACAACACCCAGAGGGGACAGTTCGGCG
AAGAGCGTTACGAGAAAGCGGAGTTCCAAAGAACAGTAAGAGCAACTTTC
TTGGCTCTCATGGAAGAAGACAAGGTATGTATGTGGGTCAATTGAAAGTG
CCCTCTCCCTCTCTGTCGGGATTAATCCCTCCTTTGGCTCTCCCGGAGGA
AGGAGGGGCACGACGGGTGATATAATCTACGGCAGTACGTACATACCCCC
CCCTTTAAAATTTGATTCGGACCATGCCGTACTCGAGGGACGTCGAGAGC
TGCTAAACCACCGCCACGTCTTGCGCTGCCACTAACCACGTCCGTGGTGC
TCGCGTGGTTCATGTCTTCGACGGACATGCGTCTGTCTGCGGCTCGTTTC
AACGCAGGCATCTGGGGTGGAGTGGCAGCTGATCGACGCCAACAGGGCGA
TCGAGAGCATCCAAGACGAGATCAAGCAGGTCGCCGCCTCTATTGTGGGA
GGAGTAGCGGGAAAGAAGATAGCGTCGCTTTGGCCTCGCGGCGAGGCGTA
GTGCCCCGGAACGTTTTAAAACAAGGCGGCGGCGCGACCGCTGTCTGCTT
TGTTTTTGTTCTCACCGAGAGGCGGCTGCACCATCAGCAACGCAAAATAT
GAAAGCTGCGCGCAAAAAAATGGAGGTACTTAATTCACGCCTGTGCGGCA
AATGTAGTGTGGGTTCCATGGCTTTACGGTAGAAGATATTTCTGCCGCAG
CCCTCGTCACGGAGAGCGGCTCTCCTCGACGACAGAAAAATCCTCGCTCT
CTGGCTCGTTTGTTTCTGCGTGCATTCGCTCATTCCTTCCTCCATTACGA
TTTGAGCGTCTACACACCGCATGTATCGTTCAAATAACGATGCTGGCGGC
TTTCACCTGGCCGAGTCCTGCATCCGTAAACAAATACTTCTGTATGATGA
CCTGCTCTGATGGATGTGCGCCAATTTAAGTACCACCCGTCTGTTCGAGC
GTAGAGCTCTTGGTCGAAATTAGCATGTTGGCTGGTGGTGGACGTGCAAC
ATTGCGTCACCAAAGGGCGAAGTGTTGCCGGCGGGAGCGAGAGGGAGTTC
CGTTTTGACAAGTGGCAAAGAGACGAGCATTTGGTGAATGCCGTGGGTTT
CCGTACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1691:12478..18234-

>mRNA_L-elsbetiae_contig1691.4632.1 ID=mRNA_L-elsbetiae_contig1691.4632.1|Name=mRNA_L-elsbetiae_contig1691.4632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig1691:12478..18234- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGCACGAAAGAGGCTGGTGGGCCTCTTGCTGGGCCGGTTAAAAG
GGGGGCGTTTATCCTGTTCGAAGGCGTGGACAGGTGCGGGAAGACGACGC
AGGCGAACCTGTTGGTCGACAGCCTCAAGGACGCGGGTCATGACGCGTGC
TTCATGCGCTTCCCAGATGGCGGGCACGAAAGAGGCTGGTGGGCCTCTTG
CTGGGCCGGTTAAAAGGGGGGCGTTTATCCTGTTCGAAGGCGTGGACAGG
TGCGGGAAGACGACGCAGGCGAACCTGTTGGTCGACAGCCTCAAGGACGC
GGGTCATGACGCGTGCTTCATGCGCTTCCCAGACCGAACAACACCTATTG
GGCAGATGATCAACGGCTTCCTGCAGAACACCACCGACATCGACGATCGC
TGTGTGCACCTTCTCTTCTCGGCTAACCGCTGGGAAGCAGAACCGAACAA
CACCTATTGGGCAGATGATCAACGGCTTCCTGCAGAACACCACCGACATC
GACGATCGCTGTGTGCACCTTCTCTTCTCGGCTAACCGCTGGGAAGCAGA
ATCGAAAATTCGAGAACGGCTGATGGCGGGCACCACGGTCGTATGTGACC
GCTACGCATACAGCGGGGTCGCCTTTTCAGCTTCCAAGCCCGATCGAAAA
TTCGAGAACGGCTGATGGCGGGCACCACGGTCGTATGTGACCGCTACGCA
TACAGCGGGGTCGCCTTTTCAGCTTCCAAGCCCGGACTCGAGGTGGGGTG
GTGCAAAGACCCCGACCGAGGACTGCCGGCACCGGACAAGATCTTGTTCC
TCGACATCTCCGTAGAGGATGCTATGAAGGACTCGAGGTGGGGTGGTGCA
AAGACCCCGACCGAGGACTGCCGGCACCGGACAAGATCTTGTTCCTCGAC
ATCTCCGTAGAGGATGCTATGAAGAGGGGACAGTTCGGCGAAGAGCGTTA
CGAGAAAGCGGAGTTCCAAAGAACAGTAAGAGCAACTTTCTTGGCTCTCA
TGGAAGAAGACAAGAGGGGACAGTTCGGCGAAGAGCGTTACGAGAAAGCG
GAGTTCCAAAGAACAGTAAGAGCAACTTTCTTGGCTCTCATGGAAGAAGA
CAAGGCATCTGGGGTGGAGTGGCAGCTGATCGACGCCAACAGGGCGATCG
AGAGCATCCAAGACGAGATCAAGCAGGTCGCCGCCTCTATTGTGGGAGGA
GTAGCGGGAAAGAAGATAGCGTCGCTTTGGCCTCGCGGCGAGGCGTAGGC
ATCTGGGGTGGAGTGGCAGCTGATCGACGCCAACAGGGCGATCGAGAGCA
TCCAAGACGAGATCAAGCAGGTCGCCGCCTCTATTGTGGGAGGAGTAGCG
GGAAAGAAGATAGCGTCGCTTTGGCCTCGCGGCGAGGCGTAG
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