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Homology
BLAST of mRNA_L-elsbetiae_contig1691.4630.1 vs. uniprot
Match: D7FSB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB8_ECTSI) HSP 1 Score: 222 bits (565), Expect = 6.690e-63 Identity = 159/318 (50.00%), Postives = 189/318 (59.43%), Query Frame = 1
Query: 616 VWRMLFVDPDSNDPK----RDARLLENAASEALRCACVFDVATDIVEALADLRDGTMWVYRGVFINESLIRYKGVNRR---DSAIQGKHLAQFLRLVGMSRTRMILLVAGGIDFNTKDASAHGLSAVLRKPFTKTGFCNILRGMYLGSEPDTDGSEPTTEAEAAHPLAVAPRPVQASFHGQHCSPTKRLRGPEGAPLAAAAEAAPTL----GGSAALPVGHSPALTPSPSYPACLGFTPFT-PFISPMKVYALGSGFLRPRQPQAEQATLKAGPQRRYTKIAPREKERAVC-LLAPPMGGEIRVGPVAADTSTCAVAV 1530
VW ML + P + P+ R A LLE+AAS+AL ACVFDVATDIVEALADLR TM VYRGVFINESL R+K +N+ D +I GKHL++FLR GMS R+ILLVAG +DF+T DA HGLSAVLRKPFTKTG +ILRG+YL +EP + AA PL+ P P+ F GQ+ R R PEG PLAA G + + +P L S YPACLGFTPFT P +P Y L LR +P KA P+RRYT IAPREK+ + AP + G AAD A AV
Sbjct: 53 VWTMLSLTPSAVIPRSMTTRTAELLESAASQALGWACVFDVATDIVEALADLRGDTMSVYRGVFINESLFRHKKLNQGKAPDKSILGKHLSKFLREAGMSSARIILLVAGDVDFDTADAGLHGLSAVLRKPFTKTGLMDILRGLYLSNEPRSGA--------AAAPLSN-PEPLGVPFPGQY-----RSRPPEGVPLAAXXXXXXXXXXXXGTTPSTIHMGAPGLASS-QYPACLGFTPFTHPMFNP---YNLPLALLRSGKP-------KAWPRRRYTNIAPREKDEDLGDQSAPVLDGASPDVTAAADECGAAAAV 345
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Response receiver |
Ec32 ortholog | Ec-20_004930.1 |
Exons | 3 |
Model size | 1981 |
Cds size | 1788 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815702.3322403-CDS-L-elsbetiae_contig1691:794..868 | 1622815702.3322403-CDS-L-elsbetiae_contig1691:794..868 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1691 795..868 + |
1691683047.5224643-CDS-L-elsbetiae_contig1691:794..868 | 1691683047.5224643-CDS-L-elsbetiae_contig1691:794..868 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1691 795..868 + |
1622815702.3429735-CDS-L-elsbetiae_contig1691:2187..2640 | 1622815702.3429735-CDS-L-elsbetiae_contig1691:2187..2640 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1691 2188..2640 + |
1691683047.5394843-CDS-L-elsbetiae_contig1691:2187..2640 | 1691683047.5394843-CDS-L-elsbetiae_contig1691:2187..2640 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1691 2188..2640 + |
1622815702.3546624-CDS-L-elsbetiae_contig1691:2898..4159 | 1622815702.3546624-CDS-L-elsbetiae_contig1691:2898..4159 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1691 2899..4159 + |
1691683047.548883-CDS-L-elsbetiae_contig1691:2898..4159 | 1691683047.548883-CDS-L-elsbetiae_contig1691:2898..4159 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1691 2899..4159 + |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815702.3675194-UTR-L-elsbetiae_contig1691:4159..4352 | 1622815702.3675194-UTR-L-elsbetiae_contig1691:4159..4352 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1691 4160..4352 + |
1691683047.5638075-UTR-L-elsbetiae_contig1691:4159..4352 | 1691683047.5638075-UTR-L-elsbetiae_contig1691:4159..4352 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1691 4160..4352 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1691.4630.1 >prot_L-elsbetiae_contig1691.4630.1 ID=prot_L-elsbetiae_contig1691.4630.1|Name=mRNA_L-elsbetiae_contig1691.4630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=596bp
MARTRGGGVIRGASAQPRRKDGNSRVAGIRGQMVPVLPRPPLAMRDSTET VAAASEPYPGSNTPLLSSQSAEDGHTFQPPEAGGLAFSPQIGDSLVTGTH VMGGSPSAMGMLGVSAVEAAGDVDAALGPDLAFGIDELGDSNIGIHDSFE NTFVDNSVVEDVVGRPPIEPGEGACSGRLNGNADQSSSRRLATARRKSPL LPPKVVWRMLFVDPDSNDPKRDARLLENAASEALRCACVFDVATDIVEAL ADLRDGTMWVYRGVFINESLIRYKGVNRRDSAIQGKHLAQFLRLVGMSRT RMILLVAGGIDFNTKDASAHGLSAVLRKPFTKTGFCNILRGMYLGSEPDT DGSEPTTEAEAAHPLAVAPRPVQASFHGQHCSPTKRLRGPEGAPLAAAAE AAPTLGGSAALPVGHSPALTPSPSYPACLGFTPFTPFISPMKVYALGSGF LRPRQPQAEQATLKAGPQRRYTKIAPREKERAVCLLAPPMGGEIRVGPVA ADTSTCAVAVDRAGEQGASLCSAGVGSPGKGKDEGSGESSFGPRGGDDCA SGAPELPLLSASPADDVLSGQPTFARVSTEAAAAVTPESHEAQLP* back to topmRNA from alignment at L-elsbetiae_contig1691:795..4352+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1691.4630.1 ID=mRNA_L-elsbetiae_contig1691.4630.1|Name=mRNA_L-elsbetiae_contig1691.4630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3558bp|location=Sequence derived from alignment at L-elsbetiae_contig1691:795..4352+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCACGCACACGGGGAGGCGGTGTAATCAGGGGTGCCTCTGCTCAGCC
CCGTAGGAAAGATGGCAACTCACGGTGAGAGCCAACTACAAAAACATGTT
CTTCATCTGCTGCTATGATACTTGTAGCTCCCTGCTGTGTTGGTGTAACG
GCGGTGAGTACGCTGTAGTCCATCAGACATGTGTCCGTAGATATGTAGAC
GATTGTTGTACATACAATCAACTACGGAGTACTACTTTACATACATACAT
ATCCAGACTATCTAGACCAAATTTGAACAATAGTCTAGATATAGATACAA
CGTAGTCTACAGTATCATGTTCAAACTCGCGGTCGCTGCTGGGAACTTCT
TCATGCACTCAATATGCGAAGCCGATGGGTGCCTTTGTCGATGACCCTTG
ATGAATGGGGGGTGGTGGTCGCTACTTCAAGTACCCCCTTTTGCACCGAG
TGCCATACCCAGGATCTACGTATACATAGTGTCATTTGTTTTCTCCATAC
ATACAAGCTCCTCTTTCAGGCGTTGTACATGAACGGAATACTTCAGGGGG
TGAAGGACGAGAACATACCAGGCGTCCCGATATCTGCATGCTGTTCTGCC
CGACTTGGAGCGTTTTCAACGATTTTAAAGTTGAACACCGGGGGAAGGAA
CAAAAGGCCGACGCAAAAAATGTTGCGATGGATGGCTTTCGCGCGCGCGT
GTGTGTGGTTGCCATCGTCAGAAATAACACACAGAAAACAACTAGCTGTC
AAAAGCCTGCTATTCGAGTTGCGCACACTATGAAGTTGCCGAGGGCAGTG
CGACAGAACAGCTGTCATACTAAACAGCCAGAACTGTCCCGTACGTCGCC
AAGTGCGTCGCCAGCCCGAAATTCTCCTGAAAAAGCCTGGTCCCAGTGCG
TGGCTCGACCAACAGCCCACAGACCCTGCATCCAGGGCAAACCCAATCTA
TATATTGACATATCTACATACATGTAAGAGAGAGCGCTCTATTTTTAACA
AATGCTATGAAAATGTTGGCGTTTTTTTTGTCTAGTCCATACGAAGTACA
CCTTCATTTCATGTACACACCACGCTGTATATACGTAGTGCCAGTTTTCC
AGGTGTGTAACTTTATGTAGTTCGCTCGGCAGACGTGCCTGTTCCACTTT
TAATGTATGCTAGCGTGTTTTTTAACCCTAATATAATCGTTCTTAGCCAC
ACTTACCTGTGTCCAGAGCTGAAAATCTACTACGCGCTATGTGGTGTGTG
TGGTTTCCTGCCGGAACTCCACATCGTCTATTCCCTTAAGATATATCGCG
GCTCGTTCCTATTCAGGAATTTGCCTTATGTATGAACTGGGGGAACCAAC
CTCACAATGTTCACCTGTCGATTGGTGCTCTTACTTTGCGCAGCGTGGCG
GGAATAAGAGGGCAAATGGTTCCCGTGCTCCCAAGGCCACCTTTAGCTAT
GAGAGACAGTACTGAGACGGTCGCGGCAGCATCAGAGCCATATCCTGGCA
GCAATACGCCACTGCTGAGTTCTCAATCTGCAGAAGATGGTCATACTTTC
CAGCCACCTGAAGCTGGTGGCCTTGCGTTTTCGCCCCAGATCGGAGATAG
CCTGGTGACTGGAACTCATGTGATGGGAGGCAGCCCGTCTGCCATGGGCA
TGCTAGGGGTATCGGCCGTAGAAGCAGCAGGAGATGTGGATGCCGCCCTC
GGTCCCGACTTAGCTTTTGGGATCGACGAACTCGGAGATAGCAACATCGG
CATCCATGACAGTTTTGAGAACACTTTCGTGGACAACAGCGTTGTCGAAG
ATGTTGTCGGCCGTCCGCCAATCGAACCGGGGGAGGGCGCTTGCAGGTGC
GTGCGTGCCTCAGGCGGGTCCTCGATATAGCCTGCCGTAAAGTGCAAGGC
GAGCCCATGCAGCATACACGTAGCACCACCCGGACAACCGTGAGTGGAAC
TTCGAAGGTGACGAAAGTTCGGAGAGGAGCCACACGGCATTAAATGTGAC
AATCTTGACCTCTAGACCTCATCGTTTGCAGCTACGGCGTTGAGCTCACG
AGCAATTTTAATTTATTCGCGTGTTTCAATACCCCCTTGCTCTTTTTCTC
CCAGTGGACGCTTGAACGGCAACGCAGATCAAAGTAGCTCCCGGCGCCTT
GCTACCGCAAGGCGAAAGTCGCCCCTTCTGCCGCCAAAGGTGGTGTGGCG
TATGCTATTCGTAGATCCCGACTCGAACGATCCGAAGCGCGACGCACGCC
TTCTGGAGAACGCCGCCTCAGAAGCGTTGAGGTGCGCATGCGTGTTCGAC
GTCGCGACAGATATTGTGGAGGCGCTGGCAGACCTCCGCGACGGTACCAT
GTGGGTTTACCGGGGGGTGTTTATCAACGAGTCGTTGATTCGCTATAAGG
GTGTGAACCGGCGCGACAGCGCGATTCAAGGCAAGCATCTGGCACAGTTC
CTGCGGCTGGTTGGAATGTCAAGAACACGCATGATCCTGCTCGTGGCTGG
CGGTATCGACTTCAACACCAAGGACGCCAGTGCACACGGCCTGAGCGCTG
TGCTTCGAAAACCTTTCACCAAGACCGGCTTTTGCAACATCTTGCGCGGC
ATGTACCTCGGCAGCGAGCCGGACACAGATGGCAGCGAGCCGACCACAGA
AGCTGAAGCGGCCCATCCACTGGCTGTTGCTCCGAGACCAGTCCAGGCTT
CGTTTCACGGACAGCACTGCTCTCCAACGAAAAGACTGAGGGGGCCCGAA
GGAGCTCCACTGGCCGCGGCAGCGGAAGCAGCACCGACGCTGGGAGGGTC
AGCGGCATTACCCGTGGGCCACTCACCTGCCCTCACACCGTCCCCCTCCT
ACCCAGCGTGCTTGGGATTTACTCCATTCACCCCGTTCATCTCCCCAATG
AAAGTCTACGCCTTGGGTTCGGGCTTCCTTCGGCCAAGGCAGCCGCAGGC
GGAGCAGGCAACGCTGAAGGCGGGGCCGCAGAGAAGGTACACAAAGATTG
CCCCGAGGGAGAAGGAAAGGGCTGTTTGTCTACTGGCTCCACCCATGGGA
GGAGAAATCCGTGTTGGTCCAGTAGCCGCCGATACCAGTACTTGCGCCGT
CGCCGTGGATCGGGCTGGTGAGCAAGGCGCTTCGCTTTGCTCGGCTGGAG
TTGGCAGCCCCGGAAAGGGCAAAGATGAAGGGTCGGGTGAATCGAGCTTT
GGCCCCCGAGGAGGCGATGACTGTGCATCGGGAGCACCGGAGCTTCCGCT
TTTGTCGGCGTCGCCAGCGGATGATGTGCTTTCAGGCCAGCCAACTTTTG
CCAGGGTTTCAACGGAAGCAGCCGCTGCGGTAACGCCGGAATCCCACGAA
GCTCAACTACCCTAGACCGGGACGCAAGCCGACGAGGAACCCGCCTCAAA
ACCGGAGGAATCGCGCGGGTGAAACACAAACTCGCGCAGTGCGCACGTTT
ACGGGCTTCTGATGTGTACATCGTTGTTCTTCGAAAATTCGACAAATTTT
CCCGGTTCCGTTCTTTTGGGTCCGCGTCGGGTAGCCAGAAGGACACGTTC
GTCTTGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1691:795..4352+ >mRNA_L-elsbetiae_contig1691.4630.1 ID=mRNA_L-elsbetiae_contig1691.4630.1|Name=mRNA_L-elsbetiae_contig1691.4630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3576bp|location=Sequence derived from alignment at L-elsbetiae_contig1691:795..4352+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCACGCACACGGGGAGGCGGTGTAATCAGGGGTGCCTCTGCTCAGCC CCGTAGGAAAGATGGCAACTCACGATGGCACGCACACGGGGAGGCGGTGT AATCAGGGGTGCCTCTGCTCAGCCCCGTAGGAAAGATGGCAACTCACGCG TGGCGGGAATAAGAGGGCAAATGGTTCCCGTGCTCCCAAGGCCACCTTTA GCTATGAGAGACAGTACTGAGACGGTCGCGGCAGCATCAGAGCCATATCC TGGCAGCAATACGCCACTGCTGAGTTCTCAATCTGCAGAAGATGGTCATA CTTTCCAGCCACCTGAAGCTGGTGGCCTTGCGTTTTCGCCCCAGATCGGA GATAGCCTGGTGACTGGAACTCATGTGATGGGAGGCAGCCCGTCTGCCAT GGGCATGCTAGGGGTATCGGCCGTAGAAGCAGCAGGAGATGTGGATGCCG CCCTCGGTCCCGACTTAGCTTTTGGGATCGACGAACTCGGAGATAGCAAC ATCGGCATCCATGACAGTTTTGAGAACACTTTCGTGGACAACAGCGTTGT CGAAGATGTTGTCGGCCGTCCGCCAATCGAACCGGGGGAGGGCGCTTGCA GCGTGGCGGGAATAAGAGGGCAAATGGTTCCCGTGCTCCCAAGGCCACCT TTAGCTATGAGAGACAGTACTGAGACGGTCGCGGCAGCATCAGAGCCATA TCCTGGCAGCAATACGCCACTGCTGAGTTCTCAATCTGCAGAAGATGGTC ATACTTTCCAGCCACCTGAAGCTGGTGGCCTTGCGTTTTCGCCCCAGATC GGAGATAGCCTGGTGACTGGAACTCATGTGATGGGAGGCAGCCCGTCTGC CATGGGCATGCTAGGGGTATCGGCCGTAGAAGCAGCAGGAGATGTGGATG CCGCCCTCGGTCCCGACTTAGCTTTTGGGATCGACGAACTCGGAGATAGC AACATCGGCATCCATGACAGTTTTGAGAACACTTTCGTGGACAACAGCGT TGTCGAAGATGTTGTCGGCCGTCCGCCAATCGAACCGGGGGAGGGCGCTT GCAGTGGACGCTTGAACGGCAACGCAGATCAAAGTAGCTCCCGGCGCCTT GCTACCGCAAGGCGAAAGTCGCCCCTTCTGCCGCCAAAGGTGGTGTGGCG TATGCTATTCGTAGATCCCGACTCGAACGATCCGAAGCGCGACGCACGCC TTCTGGAGAACGCCGCCTCAGAAGCGTTGAGGTGCGCATGCGTGTTCGAC GTCGCGACAGATATTGTGGAGGCGCTGGCAGACCTCCGCGACGGTACCAT GTGGGTTTACCGGGGGGTGTTTATCAACGAGTCGTTGATTCGCTATAAGG GTGTGAACCGGCGCGACAGCGCGATTCAAGGCAAGCATCTGGCACAGTTC CTGCGGCTGGTTGGAATGTCAAGAACACGCATGATCCTGCTCGTGGCTGG CGGTATCGACTTCAACACCAAGGACGCCAGTGCACACGGCCTGAGCGCTG TGCTTCGAAAACCTTTCACCAAGACCGGCTTTTGCAACATCTTGCGCGGC ATGTACCTCGGCAGCGAGCCGGACACAGATGGCAGCGAGCCGACCACAGA AGCTGAAGCGGCCCATCCACTGGCTGTTGCTCCGAGACCAGTCCAGGCTT CGTTTCACGGACAGCACTGCTCTCCAACGAAAAGACTGAGGGGGCCCGAA GGAGCTCCACTGGCCGCGGCAGCGGAAGCAGCACCGACGCTGGGAGGGTC AGCGGCATTACCCGTGGGCCACTCACCTGCCCTCACACCGTCCCCCTCCT ACCCAGCGTGCTTGGGATTTACTCCATTCACCCCGTTCATCTCCCCAATG AAAGTCTACGCCTTGGGTTCGGGCTTCCTTCGGCCAAGGCAGCCGCAGGC GGAGCAGGCAACGCTGAAGGCGGGGCCGCAGAGAAGGTACACAAAGATTG CCCCGAGGGAGAAGGAAAGGGCTGTTTGTCTACTGGCTCCACCCATGGGA GGAGAAATCCGTGTTGGTCCAGTAGCCGCCGATACCAGTACTTGCGCCGT CGCCGTGGATCGGGCTGGTGAGCAAGGCGCTTCGCTTTGCTCGGCTGGAG TTGGCAGCCCCGGAAAGGGCAAAGATGAAGGGTCGGGTGAATCGAGCTTT GGCCCCCGAGGAGGCGATGACTGTGCATCGGGAGCACCGGAGCTTCCGCT TTTGTCGGCGTCGCCAGCGGATGATGTGCTTTCAGGCCAGCCAACTTTTG CCAGGGTTTCAACGGAAGCAGCCGCTGCGGTAACGCCGGAATCCCACGAA GCTCAACTACCCTAGTGGACGCTTGAACGGCAACGCAGATCAAAGTAGCT CCCGGCGCCTTGCTACCGCAAGGCGAAAGTCGCCCCTTCTGCCGCCAAAG GTGGTGTGGCGTATGCTATTCGTAGATCCCGACTCGAACGATCCGAAGCG CGACGCACGCCTTCTGGAGAACGCCGCCTCAGAAGCGTTGAGGTGCGCAT GCGTGTTCGACGTCGCGACAGATATTGTGGAGGCGCTGGCAGACCTCCGC GACGGTACCATGTGGGTTTACCGGGGGGTGTTTATCAACGAGTCGTTGAT TCGCTATAAGGGTGTGAACCGGCGCGACAGCGCGATTCAAGGCAAGCATC TGGCACAGTTCCTGCGGCTGGTTGGAATGTCAAGAACACGCATGATCCTG CTCGTGGCTGGCGGTATCGACTTCAACACCAAGGACGCCAGTGCACACGG CCTGAGCGCTGTGCTTCGAAAACCTTTCACCAAGACCGGCTTTTGCAACA TCTTGCGCGGCATGTACCTCGGCAGCGAGCCGGACACAGATGGCAGCGAG CCGACCACAGAAGCTGAAGCGGCCCATCCACTGGCTGTTGCTCCGAGACC AGTCCAGGCTTCGTTTCACGGACAGCACTGCTCTCCAACGAAAAGACTGA GGGGGCCCGAAGGAGCTCCACTGGCCGCGGCAGCGGAAGCAGCACCGACG CTGGGAGGGTCAGCGGCATTACCCGTGGGCCACTCACCTGCCCTCACACC GTCCCCCTCCTACCCAGCGTGCTTGGGATTTACTCCATTCACCCCGTTCA TCTCCCCAATGAAAGTCTACGCCTTGGGTTCGGGCTTCCTTCGGCCAAGG CAGCCGCAGGCGGAGCAGGCAACGCTGAAGGCGGGGCCGCAGAGAAGGTA CACAAAGATTGCCCCGAGGGAGAAGGAAAGGGCTGTTTGTCTACTGGCTC CACCCATGGGAGGAGAAATCCGTGTTGGTCCAGTAGCCGCCGATACCAGT ACTTGCGCCGTCGCCGTGGATCGGGCTGGTGAGCAAGGCGCTTCGCTTTG CTCGGCTGGAGTTGGCAGCCCCGGAAAGGGCAAAGATGAAGGGTCGGGTG AATCGAGCTTTGGCCCCCGAGGAGGCGATGACTGTGCATCGGGAGCACCG GAGCTTCCGCTTTTGTCGGCGTCGCCAGCGGATGATGTGCTTTCAGGCCA GCCAACTTTTGCCAGGGTTTCAACGGAAGCAGCCGCTGCGGTAACGCCGG AATCCCACGAAGCTCAACTACCCTAG back to top
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