mRNA_L-elsbetiae_contig16902.4629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16902.4629.1
Unique NamemRNA_L-elsbetiae_contig16902.4629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16902.4629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16902contigL-elsbetiae_contig16902:2262..3526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16902.4629.1prot_L-elsbetiae_contig16902.4629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16902 2263..3526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.2808478-CDS-L-elsbetiae_contig16902:2262..23481622815702.2808478-CDS-L-elsbetiae_contig16902:2262..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16902 2263..2348 -
1691683047.4836907-CDS-L-elsbetiae_contig16902:2262..23481691683047.4836907-CDS-L-elsbetiae_contig16902:2262..2348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16902 2263..2348 -
1622815702.290929-CDS-L-elsbetiae_contig16902:3066..32321622815702.290929-CDS-L-elsbetiae_contig16902:3066..3232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16902 3067..3232 -
1691683047.4930742-CDS-L-elsbetiae_contig16902:3066..32321691683047.4930742-CDS-L-elsbetiae_contig16902:3066..3232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16902 3067..3232 -
1622815702.3008885-CDS-L-elsbetiae_contig16902:3451..35261622815702.3008885-CDS-L-elsbetiae_contig16902:3451..3526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16902 3452..3526 -
1691683047.506887-CDS-L-elsbetiae_contig16902:3451..35261691683047.506887-CDS-L-elsbetiae_contig16902:3451..3526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16902 3452..3526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16902.4629.1

>prot_L-elsbetiae_contig16902.4629.1 ID=prot_L-elsbetiae_contig16902.4629.1|Name=mRNA_L-elsbetiae_contig16902.4629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
VPQQTRAPESACSLWSVLAVDWRITILEKHATRDSRSLHVCPLYLCGWVR
ALGSSGDPSGADRRWSYFFARSILCGESVAGAPADTRHGERLYPLVVVAG
WTVGSGENG
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mRNA from alignment at L-elsbetiae_contig16902:2262..3526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16902.4629.1 ID=mRNA_L-elsbetiae_contig16902.4629.1|Name=mRNA_L-elsbetiae_contig16902.4629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1265bp|location=Sequence derived from alignment at L-elsbetiae_contig16902:2262..3526- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCTCAGCAGACACGCGCCCCGGAGAGCGCCTGTAGTCTCTGGTCGGT
TCTTGCTGTTGATTGGAGGATAACGGTGAGAGCCCTTACTGTCAGGGACC
GTGTGTCTCGTTGAAGAGCACATAAATACAAGATCCAGCGCCACGGTTCT
CAATCGTGCACTTGCCGGGGTTTTACTATCTGTTTTTTCGACGCTGCTGT
CAGCTCCCGATGCGAGACAGATGTACCTTTGGTAAGTTTGTAAGTGAGGC
TGATTTTCCAACCTTTTCTTGCCCCTTTCCCGCTCTCTCCACAGATTTTG
GAGAAGCACGCCACACGCGACTCCCGCTCTCTCCACGTATGCCCTCTTTA
TTTATGCGGCTGGGTTCGTGCGCTTGGATCCTCCGGGGATCCATCTGGTG
CCGATCGGCGGTGGTCCTACTTTTTCGCTCGGAGCATCTTGTGTGGTGAA
AGCGTAGCAGGTGAGATTCAGGTTGCGTGGTTTCATTCTTGATCGTGGTT
CGCTTGTGGCACGATGCACGACTGTCTGTATTACCACTGGACTTACCTTG
ACCTCGGAAAGCTCTCTGCCACTTTGCTGTGTGGGGAACGTAACTAGCTT
GGGAAAATAGCTGTTTCTGCCCCGATTGAAATATTGGCAGTACCAGTTTG
TGTTCTCGATGTTTTCACGCGTTTTTTCAGGAACCAGCAATACTGATACT
GGATGGAAAAACCTGTGCGCGCAATCACTGTGAAAATGCCTTTAAACGTC
TTGGTTTGGTCGCAAATGCTTTGTTCCTACACCCACCGTAGCTTTTGTAG
ATTGCAAATGTGTGTATAGAACGTATCGTGAAAGCAAGTCACGTTTTGCA
AAGTTGTTCTCTGTGAGTACTCTCCGTTGGCCATTGTGACACGACCATTC
CAAGTGGTTGTTCTACCCGCCGAACCTTCTCTGGGGCCGACTATCCCAAC
CCTGAGAGAGGCGAGACCAAAATAGAACACCCCGAGTGTGGTGAAGCGTA
GCTTGCTCTTCGCGTCCGTTTTGCGTGGTCCTCCCCTCTCTTAATCTTGC
TTTAAGACCTGTTTCGGGCATATAATTCATGCGCCATCGCTTTTTGAATG
TGAAGCATGCCCATAAATATATTTCCCGCCCTTGATCACGGACCTGTATC
TCTCGTTTCTTTATTTGTCTTCCTTCAGGTGCCCCAGCAGACACGCGCCA
CGGAGAGCGCCTGTACCCTCTCGTTGTTGTTGCTGGTTGGACGGTTGGAT
CTGGCGAAAACGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16902:2262..3526-

>mRNA_L-elsbetiae_contig16902.4629.1 ID=mRNA_L-elsbetiae_contig16902.4629.1|Name=mRNA_L-elsbetiae_contig16902.4629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig16902:2262..3526- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCTCAGCAGACACGCGCCCCGGAGAGCGCCTGTAGTCTCTGGTCGGT
TCTTGCTGTTGATTGGAGGATAACGGTGCCTCAGCAGACACGCGCCCCGG
AGAGCGCCTGTAGTCTCTGGTCGGTTCTTGCTGTTGATTGGAGGATAACG
ATTTTGGAGAAGCACGCCACACGCGACTCCCGCTCTCTCCACGTATGCCC
TCTTTATTTATGCGGCTGGGTTCGTGCGCTTGGATCCTCCGGGGATCCAT
CTGGTGCCGATCGGCGGTGGTCCTACTTTTTCGCTCGGAGCATCTTGTGT
GGTGAAAGCGTAGCAGATTTTGGAGAAGCACGCCACACGCGACTCCCGCT
CTCTCCACGTATGCCCTCTTTATTTATGCGGCTGGGTTCGTGCGCTTGGA
TCCTCCGGGGATCCATCTGGTGCCGATCGGCGGTGGTCCTACTTTTTCGC
TCGGAGCATCTTGTGTGGTGAAAGCGTAGCAGGTGCCCCAGCAGACACGC
GCCACGGAGAGCGCCTGTACCCTCTCGTTGTTGTTGCTGGTTGGACGGTT
GGATCTGGCGAAAACGGTGTGCCCCAGCAGACACGCGCCACGGAGAGCGC
CTGTACCCTCTCGTTGTTGTTGCTGGTTGGACGGTTGGATCTGGCGAAAA
CGGT
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