mRNA_L-elsbetiae_contig16895.4621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16895.4621.1
Unique NamemRNA_L-elsbetiae_contig16895.4621.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: A0A6H5KAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.070e-31
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1
Query:   16 PYHPADVVKSRMQQAGASGGGMVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAAMGI 213
            P +PADVVKSRMQ AGASG GM++TAS+MWKTEGLAPFYRGLSPTI+RAMVNHAATFLVYEA+M +
Sbjct:  184 PIYPADVVKSRMQSAGASGAGMISTASVMWKTEGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSV 249          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: D7FY68_ECTSI (Similar to Mitochondrial ornithine transporter 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY68_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 7.130e-29
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   16 PYHPADVVKSRMQQAGASGGGMVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAAMG 210
            P +PADVVKSRMQ AG SG GM++TAS+MWKTEGLAPFYRGLSPTI+RAMVNHAATFLVYEA+M 
Sbjct:  332 PTYPADVVKSRMQSAGGSGAGMISTASVMWKTEGLAPFYRGLSPTIVRAMVNHAATFLVYEASMS 396          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: A0A7S2CQ56_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CQ56_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 6.180e-11
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   16 PYHPADVVKSRMQQAGASGGG--MVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYE 198
            P +P DV+K+ +Q +   GGG   V  A+ +W T GLA F+ GL P + RA+VNHAATF +++
Sbjct:   88 PVYPIDVIKTNLQASIGDGGGRSFVGAAAEIWATGGLAAFWDGLGPKLARAVVNHAATFFIFD 150          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: B8C9C7_THAPS (Mitochondrial carrier protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9C7_THAPS)

HSP 1 Score: 60.5 bits (145), Expect = 4.130e-9
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 CCCLWPYHPADVVKSRMQQA-GASGGGMVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAAM 207
            C C  P +P DVVK+ +Q   G      +  A  ++  EG+  F+ GL+P ++RA VNHA TF VY+  M
Sbjct:  212 CACWIPVYPIDVVKTLVQNTEGGDSANSIEVAVQLYNEEGIGAFFNGLTPKMIRASVNHAVTFFVYDLMM 281          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: A0A167X9R1_9PEZI (Mitochondrial carrier protein n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167X9R1_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 3.310e-8
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   10 LW-PYHPADVVKSRMQQAGASGGG-----MVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAAM 207
            LW   +P DVVKS+MQ    + G      M A  + +W+TEG+  F+RGL+PT+LRAM   A TF V EA M
Sbjct:  259 LWLSSYPFDVVKSKMQTDALAPGDQQYRTMRACFAQIWRTEGMRGFWRGLAPTLLRAMPVSAGTFAVVEATM 330          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: A0A0G4HKR9_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKR9_9ALVE)

HSP 1 Score: 58.2 bits (139), Expect = 3.500e-8
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 CCCLWPYHPADVVKSRMQQ----AGASGGGMVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYE 198
            C C  P +P DVVK+  Q     +     G + TA  +W   G+  F+ GL+P ++RA+VNHA TF V++
Sbjct:  320 CACWLPVYPIDVVKTAQQSTVGGSAEDAKGAIETAREIWDRGGVGAFFDGLTPKLVRAVVNHAVTFFVFD 389          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: UPI00053FB9CB (mitochondrial ornithine transporter 1-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FB9CB)

HSP 1 Score: 55.8 bits (133), Expect = 3.830e-8
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   22 HPADVVKSRMQQAGASGGGMVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAAM 207
            +PADV+KSR QQ G  G  M   A+++++ EGLA F++GLS T+ RA   +AA FLVYE A+
Sbjct:   70 YPADVIKSR-QQTGHPGSFM-RIANVIYRHEGLAAFFKGLSLTLFRAAPANAAVFLVYEYAL 129          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: A0A0H2RUU6_9AGAM (Mitochondrial carrier n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2RUU6_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 1.500e-7
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   10 LWP-YHPADVVKSRMQQAG-ASGGGMVATASL-----MWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAA 204
            LW   +P D++KSRMQ  G A+  G    ++L     +W+TEG+A F RGL+PT++R+   + ATFL YE A
Sbjct:  223 LWACIYPIDMIKSRMQTDGFAAADGRKYKSTLDCVRTVWRTEGIAAFTRGLTPTLIRSPFANGATFLGYELA 294          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: A0A1V8SRC9_9PEZI (Uncharacterized protein n=3 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8SRC9_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 2.120e-7
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   10 LW-PYHPADVVKSRMQQAGASG----GGMVATASLMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAAM 207
            LW   +P DVVKS+MQ  G       G M A    +W+TEG+  F+RG+ PT+LRA+   A TF+  E  M
Sbjct:  237 LWLTSYPFDVVKSKMQTDGFGAQQKYGSMRACFGSIWRTEGMRGFWRGIGPTLLRALPVSAGTFVTVEMVM 307          
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Match: A0A7J7PI38_9CHLO (Mitochondrial carrier domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PI38_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 2.300e-7
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   22 HPADVVKSRMQQAGASGGGMVATAS-----LMWKTEGLAPFYRGLSPTILRAMVNHAATFLVYEAAMGIM 216
            +P  V++SR+QQ  A G  +V T+S     L W+ EGLA FY+GL+P+++R M   A T +VYE  + ++
Sbjct:  252 YPTQVIRSRLQQR-AEGRHLVYTSSWQAITLTWQREGLAGFYKGLAPSLMRVMPQSAITLMVYEGLVKVL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16895.4621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAN8_9PHAE4.070e-3183.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY68_ECTSI7.130e-2983.08Similar to Mitochondrial ornithine transporter 1 n... [more]
A0A7S2CQ56_9EUKA6.180e-1146.03Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
B8C9C7_THAPS4.130e-940.00Mitochondrial carrier protein (Fragment) n=1 Tax=T... [more]
A0A167X9R1_9PEZI3.310e-847.22Mitochondrial carrier protein n=1 Tax=Sporothrix i... [more]
A0A0G4HKR9_9ALVE3.500e-838.57Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
UPI00053FB9CB3.830e-851.61mitochondrial ornithine transporter 1-like n=1 Tax... [more]
A0A0H2RUU6_9AGAM1.500e-744.44Mitochondrial carrier n=1 Tax=Schizopora paradoxa ... [more]
A0A1V8SRC9_9PEZI2.120e-743.66Uncharacterized protein n=3 Tax=Rachicladosporium ... [more]
A0A7J7PI38_9CHLO2.300e-741.43Mitochondrial carrier domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16895contigL-elsbetiae_contig16895:3215..3430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue7.6e-24
Seed eggNOG ortholog2880.D7FY68
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-24_003600.3
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.8287187-CDS-L-elsbetiae_contig16895:3214..34301622815701.8287187-CDS-L-elsbetiae_contig16895:3214..3430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16895 3215..3430 -
1691683047.2263799-CDS-L-elsbetiae_contig16895:3214..34301691683047.2263799-CDS-L-elsbetiae_contig16895:3214..3430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16895 3215..3430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16895.4621.1prot_L-elsbetiae_contig16895.4621.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16895 3215..3430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16895.4621.1

>prot_L-elsbetiae_contig16895.4621.1 ID=prot_L-elsbetiae_contig16895.4621.1|Name=mRNA_L-elsbetiae_contig16895.4621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
CCCLWPYHPADVVKSRMQQAGASGGGMVATASLMWKTEGLAPFYRGLSPT
ILRAMVNHAATFLVYEAAMGIM
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mRNA from alignment at L-elsbetiae_contig16895:3215..3430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16895.4621.1 ID=mRNA_L-elsbetiae_contig16895.4621.1|Name=mRNA_L-elsbetiae_contig16895.4621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig16895:3215..3430- (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTTGTGGCCTTACCATCCAGCGGACGTGGTGAAGAGCCGGAT GCAGCAGGCCGGGGCCTCGGGCGGCGGCATGGTCGCGACCGCCTCCCTCA TGTGGAAAACCGAGGGCCTCGCTCCGTTCTACAGGGGACTGTCGCCGACG ATCCTGAGGGCGATGGTCAACCACGCGGCGACCTTCTTGGTGTACGAGGC GGCCATGGGCATCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16895:3215..3430-

>mRNA_L-elsbetiae_contig16895.4621.1 ID=mRNA_L-elsbetiae_contig16895.4621.1|Name=mRNA_L-elsbetiae_contig16895.4621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig16895:3215..3430- (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTTGTGGCCTTACCATCCAGCGGACGTGGTGAAGAGCCGGAT
GCAGCAGGCCGGGGCCTCGGGCGGCGGCATGGTCGCGACCGCCTCCCTCA
TGTGGAAAACCGAGGGCCTCGCTCCGTTCTACAGGGGACTGTCGCCGACG
ATCCTGAGGGCGATGGTCAACCACGCGGCGACCTTCTTGGTGTACGAGGC
GGCCATGGGCATCATGTGCTGCTGCTTGTGGCCTTACCATCCAGCGGACG
TGGTGAAGAGCCGGATGCAGCAGGCCGGGGCCTCGGGCGGCGGCATGGTC
GCGACCGCCTCCCTCATGTGGAAAACCGAGGGCCTCGCTCCGTTCTACAG
GGGACTGTCGCCGACGATCCTGAGGGCGATGGTCAACCACGCGGCGACCT
TCTTGGTGTACGAGGCGGCCATGGGCATCATG
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