mRNA_L-elsbetiae_contig1688.4617.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1688.4617.1
Unique NamemRNA_L-elsbetiae_contig1688.4617.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: A0A6H5JWK6_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.540e-15
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:  133 AKESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQSQCDSTHGRGGAEGGRRPAAVV 327
            A+E + L S+DYLWTTEKIQ  SV+DICC GK+VSV EGGYGQ+QC+STH   G+ G   P+++ 
Sbjct:   23 AREGLDLSSEDYLWTTEKIQ--SVADICCGGKMVSVLEGGYGQNQCESTHS--GSRGAGMPSSMA 83
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: D8LG61_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG61_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.580e-13
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  133 AKESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQSQCDSTH 282
            A+E + L S+DYLWTTEKIQ  SV+DICC GK+VSV EGGYGQ+QC+S H
Sbjct:  408 AREGLDLSSEDYLWTTEKIQ--SVADICCGGKMVSVLEGGYGQNQCESMH 455
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.140e-12
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  133 AKESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQSQCDSTH 282
            A+E + L S+DYLWTTEKIQ  SV+DICC GK+VSV EGGYGQ+QC+S H
Sbjct: 2032 AREGLDLSSEDYLWTTEKIQ--SVADICCGGKMVSVLEGGYGQNQCESMH 2079
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: A0A482S0W8_9ARCH (Hist_deacetyl domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0W8_9ARCH)

HSP 1 Score: 52.8 bits (125), Expect = 1.160e-5
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:    3 TILRRLLPALRAVNPSLIMLSADFDAVKGDVGSCK 107
            TI +RL+P+LRA NPSLI+LS  FDA+ GDVG+CK
Sbjct:   11 TITQRLIPSLRAFNPSLILLSMGFDALSGDVGNCK 45
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: A0A7S0C3X1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3X1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.830e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  136 KESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQ 261
            K  + L  DDY WTT K+    ++DICC+G+IVSV EGGYG+
Sbjct:  158 KMGLDLEPDDYAWTTRKVM--EIADICCQGRIVSVLEGGYGR 197
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: A0A7S3Q3P5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3P5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.160e-5
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  139 ESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQSQCDS 276
            + I L  DDY W+T KI    V+DICC+G++VS+ EGGYG +  +S
Sbjct: 1016 QGIDLTPDDYAWSTRKIM--EVADICCQGRVVSILEGGYGSTPQNS 1059
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: A0A7S2R2A7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2A7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.430e-5
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  112 GGCDRLSAKESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQS 264
            GG +R+     I L  +DY WTT K+    V+DICC+G+I+SV EGGYG++
Sbjct:  271 GGRERMG----IDLEPEDYAWTTRKVM--EVADICCQGRIISVLEGGYGRT 315
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: A0A7S1GN08_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GN08_CYCTE)

HSP 1 Score: 52.4 bits (124), Expect = 7.240e-5
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  112 GGCDRLSAKESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQSQCDST 279
            GG +R+     + L  +DY WTT KI    ++DICC+G++VSV EGGYG++   S+
Sbjct:  172 GGKERMG----LDLEPEDYAWTTRKIL--EIADICCQGRVVSVLEGGYGRTPIPSS 221
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BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Match: A0A7S4RBR2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBR2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.700e-5
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  112 GGCDRLSAKESIGLVSDDYLWTTEKIQTQSVSDICCEGKIVSVPEGGYGQSQCDST 279
            GG +R+     + L  +DY WTT KI    V+DICC+G++VSV EGGYG++   ST
Sbjct: 1352 GGRERMG----LDLEPEDYAWTTRKII--EVADICCQGRVVSVLEGGYGRTTQRST 1401
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1688.4617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JWK6_9PHAE5.540e-1560.00Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LG61_ECTSI9.580e-1370.00Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LG60_ECTSI1.140e-1270.00Histone deactylase of possible bacterial origin wi... [more]
A0A482S0W8_9ARCH1.160e-568.57Hist_deacetyl domain-containing protein n=1 Tax=ar... [more]
A0A7S0C3X1_9STRA2.830e-554.76Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3Q3P5_9STRA5.160e-550.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2R2A7_9STRA5.430e-549.02Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1GN08_CYCTE7.240e-544.64Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S4RBR2_9STRA9.700e-548.21Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1688contigL-elsbetiae_contig1688:16919..20352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size557
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1688.4617.1prot_L-elsbetiae_contig1688.4617.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1688 16962..18818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.4215086-UTR-L-elsbetiae_contig1688:16918..169611622815701.4215086-UTR-L-elsbetiae_contig1688:16918..16961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1688 16919..16961 -
1691683046.9488826-UTR-L-elsbetiae_contig1688:16918..169611691683046.9488826-UTR-L-elsbetiae_contig1688:16918..16961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1688 16919..16961 -
1622815701.45474-UTR-L-elsbetiae_contig1688:18818..189121622815701.45474-UTR-L-elsbetiae_contig1688:18818..18912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1688 18819..18912 -
1691683046.97701-UTR-L-elsbetiae_contig1688:18818..189121691683046.97701-UTR-L-elsbetiae_contig1688:18818..18912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1688 18819..18912 -
1622815701.468381-UTR-L-elsbetiae_contig1688:20166..203521622815701.468381-UTR-L-elsbetiae_contig1688:20166..20352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1688 20167..20352 -
1691683046.9898918-UTR-L-elsbetiae_contig1688:20166..203521691683046.9898918-UTR-L-elsbetiae_contig1688:20166..20352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1688 20167..20352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.4336653-CDS-L-elsbetiae_contig1688:16961..171391622815701.4336653-CDS-L-elsbetiae_contig1688:16961..17139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1688 16962..17139 -
1691683046.9593103-CDS-L-elsbetiae_contig1688:16961..171391691683046.9593103-CDS-L-elsbetiae_contig1688:16961..17139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1688 16962..17139 -
1622815701.4440012-CDS-L-elsbetiae_contig1688:18762..188181622815701.4440012-CDS-L-elsbetiae_contig1688:18762..18818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1688 18763..18818 -
1691683046.9679232-CDS-L-elsbetiae_contig1688:18762..188181691683046.9679232-CDS-L-elsbetiae_contig1688:18762..18818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1688 18763..18818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1688.4617.1

>prot_L-elsbetiae_contig1688.4617.1 ID=prot_L-elsbetiae_contig1688.4617.1|Name=mRNA_L-elsbetiae_contig1688.4617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MGVAGQRGGAGLLLSSMTRSHSGPAGTGASGLPRPASVPDVHSCAGVLSA
GGAGSAGWHGSQKQRTQGIRERKRQRQ*
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mRNA from alignment at L-elsbetiae_contig1688:16919..20352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1688.4617.1 ID=mRNA_L-elsbetiae_contig1688.4617.1|Name=mRNA_L-elsbetiae_contig1688.4617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3434bp|location=Sequence derived from alignment at L-elsbetiae_contig1688:16919..20352- (Laminarionema elsbetiae ELsaHSoW15)
AGACCATTCTTCGGCGGCTCCTGCCGGCTCTGCGAGCGGTTAATCCCTCT
CTAATCATGCTGAGCGCCGACTTCGACGCCGTCAAGGGGGACGTCGGCAG
CTGCAAGCAGGGGGGGGTGCGATCGTCTGTCTGCTAAGGAGAGCATCGGC
CTTGTGTCGGACGACTACCTCTGGACCACCGAGAAGGTATTTACGTTTTA
TTTTTATTTTTATTTTTTCGAGGGGAGGGGGTTCTGATGCGTCCTGTTCT
TGTTCTGCCTGTCTGTTTGTTTGTCGTTGTATGCATGGTTCTTGTGTTGG
TGGTTTGCTGGTTTGGTGTGTTTGTTCGCCTCTTTGCGTTTGTTTTGCGG
CTGCTGTCGCTCTTGTTTGTATTTGTCTTCGTTCGCTGCAGCTTCTGCCA
CTGCCGGTGGTGTTGTGTGTTGTGTTGTTATTCTCTGTTTTGATGTCGTG
TCGTCCCGTCCTCGCCCCCCCCCCCCCCCCCCCCCCCCGCCCGCCCCCGG
TTGGCTTTGCCCCCCTCTCCCCCCCCCGCCACCCCCCGGGCCGAACCCCC
GGATGCAGGNNNNNNNNNNGGGGTTGTTGGGTTGTTTTTTTTTTTTTTTT
TTTTGTGTTGTTGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAGGA
CGGTTCCTGTTTTCTCGCTTGTCCCCTTTTCGTCGGTCGATTGCCCCAAG
AACAAGACGTTACGTGAATGCTTTCTTTATTATTCGAACGCTACGGTACA
CGCGTTCGGGGATATGTCGATGCCAGCACTGAGCACGTCGTTCATGGTTA
TAAAGTACCTGGAAGAGCAATTAAGCTTGGTTTATCCCAAAATTTATGAA
GTGAAAAGATGGACCGCTTTGTTAGTGCCCCTCTCCCCTGCTGTTGGCGG
TGCCCCCCCCCGTTGATACCGGAGCGACCGAACCGATCTTCGTAAGCCGC
CCCCGGGAAGGGAAAGGGGTTGGGGGCGCCGCGGTGATGCCGAACGTAAC
GTGATGTACGCATGCGGAGTGTTGGTGCTGAATGTGCTGATGCGCTGATT
ACTGAATATGCTTGTTTCGCTTGGCTTGTTGACGATAAAATTGAGGGGTT
AATTTTTCGGACGTAATAGCACGGTTTAAATTTTTAGCTTCTACCTGCGC
GATGTGACTGGCCCCTGGCGCCTCATCGGCCCCATTCCCATATGGAGGTG
GGTGGGCAAGGAACGAAATTCTGCATAAAGCGTTTACATGTGTCGTTTAC
TTGTGTCTGTCTTGGCGAAATAACAAACAAAGAGCAGCGTCGTATTTCTT
ACGGAGTAGATATATAGTAATATGCAAGACGAGCGGCGGTCGAATGTCGT
TTCTGTTTCTCATCCACCGTTCGTTCTCGTGTCCCACCACCATCCACCTC
TTGCGACTTGGGGGGGGTCAATCAATCAATATCAAACCAGATCCAGACCC
AAAGCGTGTCGGACATCTGCTGCGAGGGCAAGATCGTGAGCGTGCCGGAG
GGCGGCTACGGCCAGAGCCAATGCGACAGCACGCATGGGCGTGGCGGGGC
AGAGGGGGGGCGCCGGCCTGCTGCTGTCGTCCATGACCAGGTCAGTCATG
ATGATGTGCGTTCAACCACGCTTTTAAAAAAACAAAATTGTCCTATCTTT
GTGCCGACTTCCCGCAAAATCCGGCTTCACTGCCTTGTTGGGCGTGACCG
ATACAACACATGTTACAATTGCGTATTTACATACATACACACATACCTCC
GTCCTTTCTTGGCGGTGAGCGTTCGACTGGAGTTAATTTGATCGTAGCTG
GCGGTTACAGTAGTTGGTGTTTAGCCTACGGCACGTTTGGTGTCTGCCCA
TGAATTTCTCTGCCAGTTTTTGGGTGCTCTACATGCATACAATGATTCCC
TCCGGACGTTGTTCAAATCATTGGGTGAAGCAAGAGGTGTATATTGCAAT
TACTCCTTGTGCTACTTAAACGTGCAGCAAGGACATGACAAAACGAATCA
CACACGTGAAATAGCGCATTCGATCTTGGGGCAAATAAATGGCCGCGATG
GCTTCCGAAAGCAAATTAAAAATATGGGACGGTGATTCAACATCCAAACG
TGCGTCAGCAAGGGATAAGAAGAGCCAAAGAAACTAGCGTCCTCCGTGGC
AGGCTTTGTGGTGTAGACGGTGGTGCCTTAGCTGTTGAAGTACACACGGA
CTGCTGAGAAAAAATGTACCGCACGCTACACCTGTATGCAGCGAAAACAA
CTCAGCACCTGTGTGTGTGGCACGGCATCGATCCTGGGGACAAAAACAAA
TCGCCGCAAGATCGTCGGCCAGAAGAACGGATGTTTTAGCCGTCACGAAC
CTGATGGCTTGACTTGTTGCTGCGGTTCGATTTCTGAGCTGTATCTCGAA
GAGTGGGGCGTGCGCTTGCCTTTTTTATGTTGCTGCTTTGAAACCATGCC
TCGTAAAAGGAACAAACACTGACGTTTTCACGTGCGTAGTTGAAGCGTCA
ACAGACCAACAGCTGTCGGCATCGTACTTGTTGGTGCCTGCTGCACTTAA
CAGGCCGGTTAGCTTTTGACAGCCTTGGCGCAGTTCCATGTCTTAGGTTC
TTACATTTGTTGTTTTATCATCATTGGTGATTGCCGTAGTTCCCGCTTGC
ACCCGTTGGTCGGCATTCGTCGCGTGTGGCCTTCGCCACGCCACGTTGAA
CATCTCTACAGCGGTACAAGCAGTGCTGCTTTGTGGTTCTGGCCGTGGGT
TGTTATTGTTGTTGCTGCCTGCCGCTGCTGCTATTTTAAAATAAAATAAA
ACAAAGAATCAAAGATGGAACCTAACCCATACTAGAGCAAAGACTCGATA
TGGGGTTCAAACGGTATTCCATACAGAGACGTAATATTTGGCGAAGCGAG
CAGAAAAAATAACCTAAATAACAATTTATTTTTTGTTCTCTTCTTGTTGC
TGCCCATCGGTCTCTGTTTGTCGCGTGGTCACCGCTCCGACCCCGTTGTT
GCTCTCGACATTCGACGTCCGACGTCGCGCTGCCGCTCCTGCCGCTGCTG
CCGCTGCCCCGCCTGCTCCTTTTTTTGTTCTCGCTTTTTTAACTTGCGCT
CGATATCGATTTTTGACTGTGATCACCGCTCCGACCTCGCTCTTGCTCTC
GCCGTCGCCGTCGCTGTCGCCGTTGCCGTTGCCGCTGCCGCTGCTATTGG
TGCTGCCCCGCAGGTCTCACTCCGGCCCCGCCGGCACCGGTGCGAGCGGC
CTGCCACGGCCAGCGTCTGTTCCCGACGTACACAGCTGCGCTGGAGTGCT
GAGCGCCGGCGGCGCTGGCAGCGCCGGCTGGCACGGAAGCCAGAAGCAAA
GAACACAAGGGATACGCGAGAGGAAACGGCAACGGCAGTAGCGCGGGGCC
GCCGCCGGCGCGAGGCTACCAAGTAAAATCTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1688:16919..20352-

>mRNA_L-elsbetiae_contig1688.4617.1 ID=mRNA_L-elsbetiae_contig1688.4617.1|Name=mRNA_L-elsbetiae_contig1688.4617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig1688:16919..20352- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGTGGCGGGGCAGAGGGGGGGCGCCGGCCTGCTGCTGTCGTCCAT
GACCAGATGGGCGTGGCGGGGCAGAGGGGGGGCGCCGGCCTGCTGCTGTC
GTCCATGACCAGGTCTCACTCCGGCCCCGCCGGCACCGGTGCGAGCGGCC
TGCCACGGCCAGCGTCTGTTCCCGACGTACACAGCTGCGCTGGAGTGCTG
AGCGCCGGCGGCGCTGGCAGCGCCGGCTGGCACGGAAGCCAGAAGCAAAG
AACACAAGGGATACGCGAGAGGAAACGGCAACGGCAGTAGGTCTCACTCC
GGCCCCGCCGGCACCGGTGCGAGCGGCCTGCCACGGCCAGCGTCTGTTCC
CGACGTACACAGCTGCGCTGGAGTGCTGAGCGCCGGCGGCGCTGGCAGCG
CCGGCTGGCACGGAAGCCAGAAGCAAAGAACACAAGGGATACGCGAGAGG
AAACGGCAACGGCAGTAG
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