mRNA_L-elsbetiae_contig16879.4615.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16879.4615.1
Unique NamemRNA_L-elsbetiae_contig16879.4615.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: D8LDF4_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF4_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 1.290e-68
Identity = 102/120 (85.00%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFDFT+TKFWVNG+RGDSCHAVIDESGLL EGFHKRT+ELR+HYYPLEVA DLS E R+EMMVEWVTKAHEAMV AGITK+IL  AV+KANL FRPGHGELLRWV++ GVPLLMFSAGIA
Sbjct:   13 DFDFTLTKFWVNGKRGDSCHAVIDESGLLGEGFHKRTSELRDHYYPLEVAPDLSPEMRVEMMVEWVTKAHEAMVAAGITKDILSAAVSKANLLFRPGHGELLRWVDKYGVPLLMFSAGIA 132          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.680e-66
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFDFT+TKFWVNG+RGDSCHAVID SGLL EGFHKRT ELRNHYYPLEVA DLS E R+EMMVEWVTKAH+AMV AGITK+IL  AV+KANL FRPGHGELLRWV++ GVP LMFSAGIA
Sbjct:   47 DFDFTLTKFWVNGKRGDSCHAVIDGSGLLGEGFHKRTWELRNHYYPLEVAPDLSPEMRLEMMVEWVTKAHDAMVAAGITKDILSAAVSKANLLFRPGHGELLRWVDKHGVPFLMFSAGIA 166          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A2R5G5J1_9STRA (5'-nucleotidase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5J1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.140e-31
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFD+TMT FWV   RG SCH  I+E GLL + +H+    L+  Y+PLE++ ++S E + + MVEWV KAHEA+ EAG  KE +  AV +A ++ R G  E L  +++ G+P+L+FSAGIA
Sbjct:  915 DFDYTMTTFWVGEERGYSCHRTIEECGLLPDSYHRVARGLQEKYFPLEISAEISHEQKYKYMVEWVEKAHEALKEAGFRKEYVAEAVRRARVELRAGVPEFLSMLSKAGIPVLIFSAGIA 1034          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A7S2RNM4_9STRA (5'-nucleotidase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RNM4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 7.260e-31
Identity = 55/121 (45.45%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 DFDFTMTKFW-VNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFD+TMT FW  NG RG SCHAV+++ GLL + +H     L+  Y+PLE++++++ E + + MVEWV +A EA++++G+ KE +  AV KANL+ R G  + L+ + +  +P+L+FSAGIA
Sbjct:   92 DFDYTMTTFWDENGNRGHSCHAVLEDCGLLPDSYHAVAQALQKKYFPLEISNEITHEEKYKYMVEWVEQAEEALIDSGLRKEHIPIAVKKANLRLRDGVPDFLKRLEKANIPVLIFSAGIA 212          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A7S3UTG8_HETAK (5'-nucleotidase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTG8_HETAK)

HSP 1 Score: 113 bits (282), Expect = 8.710e-28
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGI 357
            DFD+T+TKF  +G+ G S H V+ E  +L+E +H+    L + YYP+E    +SQ  ++  MVEW    H A+VE G+T+++LR AVA A +Q R G  +L  W    GVP+L+FSAG+
Sbjct:   93 DFDYTLTKFHYDGKMGKSTHGVLAECDMLSEEYHRTARALFDRYYPVETNPSMSQAEKVPAMVEWWEADHAALVEHGLTRDVLRSAVAAAGVQLRAGCVDLFDWAEGRGVPVLLFSAGL 211          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A388LLW2_CHABU (5'-nucleotidase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLW2_CHABU)

HSP 1 Score: 111 bits (277), Expect = 5.400e-26
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFD T+TKF VNGR+G +CHA++ +       + ++  +L  HYYPLE+  DLS E +   M EW TK H  +VE G+ +  +R +V  AN++FR G  EL   + +  VPLL+FSAG+A
Sbjct: 1371 DFDMTLTKFRVNGRKGQTCHALLSQEN---PEYDRKRQQLYEHYYPLEICPDLSYEDKFRYMEEWWTKVHGLLVEGGLQRSAIRASVGSANIEFREGCTELFALLEQLEVPLLIFSAGLA 1487          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A7S0WMC1_9CHLO (5'-nucleotidase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WMC1_9CHLO)

HSP 1 Score: 106 bits (265), Expect = 1.770e-25
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFD T+T   VNG+ G SCH V++    L++ + ++T EL   YYP+E+ H+L+   +I +M EW ++AHE ++  G+T E +R AV  ANL  RPG  ++++ +    VP L+FSAGIA
Sbjct:   57 DFDRTLTMCRVNGKTGASCHGVMESLETLSKEYREQTGELFKKYYPIEICHNLTIPEKIPIMEEWYSQAHELLLREGVTLEHIRDAVMGANLALRPGVCDVIKMLQCNDVPFLIFSAGIA 176          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A444XRW6_ARAHY (5'-nucleotidase n=6 Tax=Arachis TaxID=3817 RepID=A0A444XRW6_ARAHY)

HSP 1 Score: 105 bits (263), Expect = 7.170e-25
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEG---FHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFD T+TKFW+NG RG S H      GLL +G   + ++   L  HY+PLE +  +  E + ++M EW  K H  +VE G+T E +R +VA AN+ FR G GEL  ++    +P+L+FSAG+A
Sbjct:   82 DFDATLTKFWINGTRGQSSH------GLLKQGNPEYDEKRQRLYEHYHPLEFSPTIGLEEKTKLMEEWWGKTHGLLVEGGLTFESIRQSVADANIAFREGVGELFEYLEERDIPVLIFSAGLA 198          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A7S3DJJ1_9EUKA (5'-nucleotidase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DJJ1_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 9.600e-25
Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGI 357
            DFD+TM+KF+  G++G S H  I+   LL + +H++  E+++ YYPLE++ +L+QE +  +MVEW   AH  + + G  + ++  AV +A+L  R G  E+       GVP+L+FSAGI
Sbjct:   76 DFDYTMSKFFFEGKKGSSSHGAIEACNLLGDEYHQKVIEVKDKYYPLEISSELTQEEKFPLMVEWWDTAHFLLKQHGFEQSMIAKAVERAHLSLRDGVQEMFHVTADHGVPVLIFSAGI 194          
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Match: A0A1S2XXK8_CICAR (5'-nucleotidase n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XXK8_CICAR)

HSP 1 Score: 102 bits (255), Expect = 8.410e-24
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 DFDFTMTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQEARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWVNREGVPLLMFSAGIA 360
            DFD T+TKFWVNG RG S H ++ +       +  +  +L  HY+PLE +  L  E + ++M EW  K H  ++E G+T E +R +VA AN+ FR G  EL  ++    +P+L+FSAG+A
Sbjct:   80 DFDATLTKFWVNGTRGQSSHGLLQQDN---PEYDAKRQQLYEHYHPLEFSPTLGFEEKRKLMEEWWGKTHGLLIEGGLTYESIRQSVANANIAFREGVSELFEFLEERDIPVLIFSAGLA 196          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16879.4615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDF4_ECTSI1.290e-6885.005'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JI70_9PHAE1.680e-6683.335'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
A0A2R5G5J1_9STRA2.140e-3148.335'-nucleotidase n=1 Tax=Hondaea fermentalgiana Tax... [more]
A0A7S2RNM4_9STRA7.260e-3145.455'-nucleotidase n=1 Tax=labyrinthulid quahog paras... [more]
A0A7S3UTG8_HETAK8.710e-2843.705'-nucleotidase (Fragment) n=1 Tax=Heterosigma aka... [more]
A0A388LLW2_CHABU5.400e-2644.175'-nucleotidase n=1 Tax=Chara braunii TaxID=69332 ... [more]
A0A7S0WMC1_9CHLO1.770e-2542.505'-nucleotidase n=1 Tax=Pyramimonas obovata TaxID=... [more]
A0A444XRW6_ARAHY7.170e-2543.095'-nucleotidase n=6 Tax=Arachis TaxID=3817 RepID=A... [more]
A0A7S3DJJ1_9EUKA9.600e-2539.505'-nucleotidase n=1 Tax=Palpitomonas bilix TaxID=6... [more]
A0A1S2XXK8_CICAR8.410e-2440.835'-nucleotidase n=1 Tax=Cicer arietinum TaxID=3827... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16879contigL-elsbetiae_contig16879:1122..2065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.2e-50
Seed eggNOG ortholog2880.D8LDF4
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the pyrimidine 5'-nucleotidase family
EggNOG OGsKOG3128@1,KOG3128@2759
EC3.1.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-15_000820.1
Exons3
Model size360
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16879.4615.1prot_L-elsbetiae_contig16879.4615.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16879 1122..2050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.2523491-CDS-L-elsbetiae_contig16879:1121..12681622815701.2523491-CDS-L-elsbetiae_contig16879:1121..1268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16879 1122..1268 -
1691683046.832459-CDS-L-elsbetiae_contig16879:1121..12681691683046.832459-CDS-L-elsbetiae_contig16879:1121..1268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16879 1122..1268 -
1622815701.2644053-CDS-L-elsbetiae_contig16879:1637..17061622815701.2644053-CDS-L-elsbetiae_contig16879:1637..1706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16879 1638..1706 -
1691683046.8485277-CDS-L-elsbetiae_contig16879:1637..17061691683046.8485277-CDS-L-elsbetiae_contig16879:1637..1706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16879 1638..1706 -
1622815701.2771063-CDS-L-elsbetiae_contig16879:1921..20501622815701.2771063-CDS-L-elsbetiae_contig16879:1921..2050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16879 1922..2050 -
1691683046.859669-CDS-L-elsbetiae_contig16879:1921..20501691683046.859669-CDS-L-elsbetiae_contig16879:1921..2050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16879 1922..2050 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.287751-UTR-L-elsbetiae_contig16879:2050..20651622815701.287751-UTR-L-elsbetiae_contig16879:2050..2065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16879 2051..2065 -
1691683046.873454-UTR-L-elsbetiae_contig16879:2050..20651691683046.873454-UTR-L-elsbetiae_contig16879:2050..2065Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16879 2051..2065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16879.4615.1

>prot_L-elsbetiae_contig16879.4615.1 ID=prot_L-elsbetiae_contig16879.4615.1|Name=mRNA_L-elsbetiae_contig16879.4615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MTKFWVNGRRGDSCHAVIDESGLLAEGFHKRTTELRNHYYPLEVAHDLSQ
EARIEMMVEWVTKAHEAMVEAGITKEILRGAVAKANLQFRPGHGELLRWV
NREGVPLLMFSAGIA
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mRNA from alignment at L-elsbetiae_contig16879:1122..2065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16879.4615.1 ID=mRNA_L-elsbetiae_contig16879.4615.1|Name=mRNA_L-elsbetiae_contig16879.4615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=944bp|location=Sequence derived from alignment at L-elsbetiae_contig16879:1122..2065- (Laminarionema elsbetiae ELsaHSoW15)
GACTTCGATTTCACCATGACCAAGTTCTGGGTAAACGGCAGGCGGGGCGA CTCCTGCCACGCCGTCATCGACGAGAGCGGCCTGCTCGCGGAGGGGTTCC ACAAGAGGACGACAGAGCTGAGGAACCATTACTACCCGCTAGAGGTACAG CAGTACCGCGAGGTGTCTAGATATGTCTTTTGAGGTATTTTATGTATGAA GTGGCAGCTGAAGCTACCCCGCCCCTCTCTCCGAGGGGACCACAGCAGCA GCAGCAGCCTTGCCGTATTGGACGACGAATGTATCGATTCGCAGCGGACC CTGCGTGCCCCCCTTTGGTTGGCCCGTGTCGGCTCCTGAACAACATTGGG ATGTATCAGGTGGCTCATGATCTATCTCAGGAAGCCAGGATCGAGATGAT GGTGGAGTGGGTGACTAAGGCGCACGAGGTGCGTATGTATGTATGTATGT ATGTATGTACATACGTGTCATGTGCATTCTATGGTATGCTTTGACGGATC CCCGTTTTTGCCGTCGCTTATTTTGTGCCCTCGAGTTCAGGAGCCGTTCA GCGTTTGTTCCGGTTTCAGCCGCCCGTCTAGAGTCAGACAAGAGAGCGGA GAGCTGCTGTCAGACAATGCTGTCAGACAAAGCTCGATATCGAGTCGCCA TAATAAAGAGTCAAAAAGTGAGCCGATCTGGAACAAAGCCTTGGCCGGGA GTGGCGACAAGCAGACGGGCGCCCAGCAGACAAGGCATTCACGGCCGGTT CGTGTGATATTGTGGCGATGCTCTGTTTTGTCTTTTATCTGTTGCAGGCG ATGGTGGAAGCCGGCATAACCAAGGAAATATTGCGCGGCGCCGTCGCCAA GGCTAACCTCCAGTTCAGGCCGGGGCATGGCGAGCTCCTTCGCTGGGTGA ACCGTGAGGGGGTCCCGTTGCTCATGTTCAGCGCGGGTATCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16879:1122..2065-

>mRNA_L-elsbetiae_contig16879.4615.1 ID=mRNA_L-elsbetiae_contig16879.4615.1|Name=mRNA_L-elsbetiae_contig16879.4615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig16879:1122..2065- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCAAGTTCTGGGTAAACGGCAGGCGGGGCGACTCCTGCCACGCCGT
CATCGACGAGAGCGGCCTGCTCGCGGAGGGGTTCCACAAGAGGACGACAG
AGCTGAGGAACCATTACTACCCGCTAGAGATGACCAAGTTCTGGGTAAAC
GGCAGGCGGGGCGACTCCTGCCACGCCGTCATCGACGAGAGCGGCCTGCT
CGCGGAGGGGTTCCACAAGAGGACGACAGAGCTGAGGAACCATTACTACC
CGCTAGAGGTGGCTCATGATCTATCTCAGGAAGCCAGGATCGAGATGATG
GTGGAGTGGGTGACTAAGGCGCACGAGGTGGCTCATGATCTATCTCAGGA
AGCCAGGATCGAGATGATGGTGGAGTGGGTGACTAAGGCGCACGAGGCGA
TGGTGGAAGCCGGCATAACCAAGGAAATATTGCGCGGCGCCGTCGCCAAG
GCTAACCTCCAGTTCAGGCCGGGGCATGGCGAGCTCCTTCGCTGGGTGAA
CCGTGAGGGGGTCCCGTTGCTCATGTTCAGCGCGGGTATCGCCGCGATGG
TGGAAGCCGGCATAACCAAGGAAATATTGCGCGGCGCCGTCGCCAAGGCT
AACCTCCAGTTCAGGCCGGGGCATGGCGAGCTCCTTCGCTGGGTGAACCG
TGAGGGGGTCCCGTTGCTCATGTTCAGCGCGGGTATCGCC
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