mRNA_L-elsbetiae_contig16876.4614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16876.4614.1
Unique NamemRNA_L-elsbetiae_contig16876.4614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig16876.4614.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.900e-31
Identity = 75/127 (59.06%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:    1 RRDTLRGRFAYRQKYAVLRFPPPEAAALASWRRASSAGMAPXXXXXXTLTLLKGRSGAEKEKVVSLEGAEVTLGTAMAGNLYPFVVSFP----APQRAGPSGKDHRQQKQRGERHALPPRRNTEDFM 369
            RRDTLRGRFAYRQ+YAVLRF PPEAA+L+S RR S  G  P      TLTLLKGR  +E  KV+SLEGAEVTLGTAMAGNLYPFV+SFP    AP    P+ + HR +              TED+M
Sbjct:  592 RRDTLRGRFAYRQQYAVLRFEPPEAASLSSLRRESGFGGVPLRPPPPTLTLLKGRGKSETGKVMSLEGAEVTLGTAMAGNLYPFVISFPSTAPAPTTISPT-RSHRNRPXXXXXXXXXXXXXTEDYM 717
[Close]
BLAST of mRNA_L-elsbetiae_contig16876.4614.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.220e-25
Identity = 68/107 (63.55%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 RRDTLRGRFAYRQKYAVLRFPPPEAAALASWRRASSAGMAPXXXXXXTLTLLKGRSGAEKEKVVSLEGAEVTLGTAMAGNLYPFVVSFPAPQRAGPS---GKDHRQQ 312
            RRDTLRGRFAYRQ+YAVLRF PPEA +L+S RR S +G  PXXXXXX          +E EKV+SLEGAEVTLGTAMAG+LYPFV+SFP+   A P+    + HR Q
Sbjct:  606 RRDTLRGRFAYRQQYAVLRFAPPEATSLSSLRRESGSGGVPXXXXXXXXXXXXXXXXSETEKVMSLEGAEVTLGTAMAGDLYPFVISFPSTAPAPPTISPTRSHRNQ 712
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16876.4614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAS6_9PHAE4.900e-3159.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK06_ECTSI2.220e-2563.55CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16876contigL-elsbetiae_contig16876:90..2134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue4.5e-22
Seed eggNOG ortholog2880.D7FK06
KEGG koko:K15335,ko:K19625
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
EC2.1.1.203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons3
Model size402
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16876.4614.1prot_L-elsbetiae_contig16876.4614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16876 92..2134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.1891196-CDS-L-elsbetiae_contig16876:91..1221622815701.1891196-CDS-L-elsbetiae_contig16876:91..122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16876 92..122 -
1691683046.8016407-CDS-L-elsbetiae_contig16876:91..1221691683046.8016407-CDS-L-elsbetiae_contig16876:91..122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16876 92..122 -
1622815701.1994598-CDS-L-elsbetiae_contig16876:1053..12201622815701.1994598-CDS-L-elsbetiae_contig16876:1053..1220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16876 1054..1220 -
1691683046.8128614-CDS-L-elsbetiae_contig16876:1053..12201691683046.8128614-CDS-L-elsbetiae_contig16876:1053..1220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16876 1054..1220 -
1622815701.2173674-CDS-L-elsbetiae_contig16876:1933..21341622815701.2173674-CDS-L-elsbetiae_contig16876:1933..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16876 1934..2134 -
1691683046.822009-CDS-L-elsbetiae_contig16876:1933..21341691683046.822009-CDS-L-elsbetiae_contig16876:1933..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16876 1934..2134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16876.4614.1

>prot_L-elsbetiae_contig16876.4614.1 ID=prot_L-elsbetiae_contig16876.4614.1|Name=mRNA_L-elsbetiae_contig16876.4614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
RRDTLRGRFAYRQKYAVLRFPPPEAAALASWRRASSAGMAPMPPPPPTLT
LLKGRSGAEKEKVVSLEGAEVTLGTAMAGNLYPFVVSFPAPQRAGPSGKD
HRQQKQRGERHALPPRRNTEDFMQAPQEGVQPP
back to top

mRNA from alignment at L-elsbetiae_contig16876:90..2134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16876.4614.1 ID=mRNA_L-elsbetiae_contig16876.4614.1|Name=mRNA_L-elsbetiae_contig16876.4614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2045bp|location=Sequence derived from alignment at L-elsbetiae_contig16876:90..2134- (Laminarionema elsbetiae ELsaHSoW15)
CGTCGCGACACGCTGCGAGGCAGGTTCGCCTACCGGCAAAAGTACGCCGT
GCTCCGCTTCCCCCCGCCCGAGGCGGCGGCGCTGGCGTCGTGGAGGCGTG
CTTCTAGTGCGGGGATGGCCCCGATGCCTCCCCCCCCTCCTACGCTAACG
CTGCTGAAAGGCCGCAGTGGGGCGGAGAAGGAGAAGGTTGTGTCTCTCGA
GGTGGGTCTTTTTTTTTTTTTTTCTTCACATATATTTCCAGTGCTTGATG
GGCCTCTTGTCACGAAGACATCTTGCCAGATTTTTCTTCTTTTTTTTTCT
TCTTCACATTTCTTTCCAGTGCTTGATGGGCCTCCTTGTCACGACAACAT
CTTGCCAGAGTGCTGAACCGTGGTCACACAGTAGAAGGATTATTTTTCCC
CCAAGGCCCCCGCTAACCCTTTCTGCGGTGCTTGCCTAAGATTTTTTGTC
GCGAGAAGGGTCCAGCCGTTCCATTCCCTCGTCGACGGTAAGGTCGAAGT
TTGTGCAACTCTCGAGGTGGGTCTAAGTCTGCGTTTAGCGGCAGAGTGTG
TACATATAGTCTACATAGTGCCGACGTTTTTGCGATGAGCCCATGCCATT
CCCTCTGGCTGTCATCCTCCAGGCTCGGTGCTTTGACTCGTGTTTTTATC
GTGGTTCGAGTCTGTTGAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCGGTCCCCCCCCCCCGCGGGGGGGGGGGCCCGGGC
CCGGCNNNNNNNNNNTTTTGGGGTGCGCCCATCCCCTTCCCTCGGGCTGT
CACCCCCCGGGCTGGGTGGTTTGCTGCGTTTTTTTTTTGTGTTTGGGGTT
TGTTGGCCCCCCCCCCCCCCCCCCCCCTGCTCCCCGGCGGCTCCGTCGCT
GTGTCGGCAAACAGGGCGCGGAGGTGACCCTAGGCACGGCAATGGCTGGC
AACCTGTACCCCTTCGTGGTTTCGTTTCCGGCGCCGCAGCGGGCAGGGCC
TAGTGGAAAGGACCACAGGCAACAGAAGCAACGGGGGGAGCGGCACGCGC
TCCCACCCCGGCGCAACACCGAAGACTTCATGTTCACGGGGGTGTTGGAC
GCCTCCGGCTCTTCACATTCCGTCGCGGCTAGCGACGCCGCCGGTGGTGG
CGGCGGCGGCCGTGGCGGCCGTGGCGGCCGTGGCGGCCGTGGTGGTGGCG
ATATATCCGGCGGCTACTACCGCCAGCAGTCGGCCCTGACCGATGCCGCC
GTTGTTGGCGGCCGGGGGGGGGTGGAGGAGGCGCGTGGCCGTTACGGCAG
CATGCCGCCGCCGCCGCCGCCGCCGCCGCCCGGCGCGCTCTCGGCTTCGA
CGTCGGCTTCGCCGTCGAGGCTGAACTCGCCCTACCTGCAGCGGCGACCC
AGCAACGCCAACAGCAGCGCCAGCAGCGCCAGCACGATGACCGTGGGCAG
GATGAGGAGCGACTCGCTCGGGTCGTCCTGGGGATCGGGAGCGGCGAGGC
CGAGAAAAACGCTGCATCTGGGCTGTGACACGGAGGAGGAGACGCTGCAG
TGGGCGAGGTGAGAGCGCGGCGGGGGGAAGAAGAGAGCGCGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTTGAATGCTAAAAAAGCGGTTGCTTT
TGCTTCCGAAAGTAAACAATTTCAAAGAAAGTAGGCCGCCCAAATACACG
TTTAAGAAACCTCTGTGTACCTTTTCAGAGAACGTCGAAACGGTTTCGGA
GTCCTCCTCTTTTTTTTGTTTTTCGATAAGAATGCCCCTTAGGCTTTCCT
TTGGAGGCGTGCTCTTTCTTGGATGTCCGTTTCGGGGGCTTTATCTGCCC
CCACCCCCCCTCCTTCCGACAGATGTGAGGCAGGGAAGAAAGTCGTCAAA
GGAAGGAACTAATCCCCAAGGCGGCTGACCGGCTGGCTATGTATAATACT
TCGACTTTGTTGCTGACGAGGGGGGGGAGTGCTGAACCCTGCTCGCGATT
TAAACACGACAGGCAGGCACCGCAGGAGGGGGTCCAACCCCCCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16876:90..2134-

>mRNA_L-elsbetiae_contig16876.4614.1 ID=mRNA_L-elsbetiae_contig16876.4614.1|Name=mRNA_L-elsbetiae_contig16876.4614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig16876:90..2134- (Laminarionema elsbetiae ELsaHSoW15)
CGTCGCGACACGCTGCGAGGCAGGTTCGCCTACCGGCAAAAGTACGCCGT
GCTCCGCTTCCCCCCGCCCGAGGCGGCGGCGCTGGCGTCGTGGAGGCGTG
CTTCTAGTGCGGGGATGGCCCCGATGCCTCCCCCCCCTCCTACGCTAACG
CTGCTGAAAGGCCGCAGTGGGGCGGAGAAGGAGAAGGTTGTGTCTCTCGA
GCGTCGCGACACGCTGCGAGGCAGGTTCGCCTACCGGCAAAAGTACGCCG
TGCTCCGCTTCCCCCCGCCCGAGGCGGCGGCGCTGGCGTCGTGGAGGCGT
GCTTCTAGTGCGGGGATGGCCCCGATGCCTCCCCCCCCTCCTACGCTAAC
GCTGCTGAAAGGCCGCAGTGGGGCGGAGAAGGAGAAGGTTGTGTCTCTCG
AGGGCGCGGAGGTGACCCTAGGCACGGCAATGGCTGGCAACCTGTACCCC
TTCGTGGTTTCGTTTCCGGCGCCGCAGCGGGCAGGGCCTAGTGGAAAGGA
CCACAGGCAACAGAAGCAACGGGGGGAGCGGCACGCGCTCCCACCCCGGC
GCAACACCGAAGACTTCATGGCGCGGAGGTGACCCTAGGCACGGCAATGG
CTGGCAACCTGTACCCCTTCGTGGTTTCGTTTCCGGCGCCGCAGCGGGCA
GGGCCTAGTGGAAAGGACCACAGGCAACAGAAGCAACGGGGGGAGCGGCA
CGCGCTCCCACCCCGGCGCAACACCGAAGACTTCATGCAGGCACCGCAGG
AGGGGGTCCAACCCCCCGCAGGCACCGCAGGAGGGGGTCCAACCCCCC
back to top