mRNA_L-elsbetiae_contig16867.4611.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16867.4611.1
Unique NamemRNA_L-elsbetiae_contig16867.4611.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5KWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS2_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.430e-46
Identity = 88/163 (53.99%), Postives = 108/163 (66.26%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W EDFL  A   NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S KIP   NP HAL  M  TA  L  + + VNETF+LHLF+ ALS+EYAMTKH LRH
Sbjct:  163 SFSSWLEDFLMAANTANLLELFEEGGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRH 324
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5KZG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG8_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.730e-46
Identity = 87/163 (53.37%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W ED L  A   NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S KIP   NP HAL  M  TA  L  + + VNETF+LHLF+ ALS+EYAMTKH LRH
Sbjct:  163 SFSSWLEDLLMAANTANLLELFEEGGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRH 324
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5J739_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J739_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.530e-45
Identity = 87/163 (53.37%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W EDF   A   NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S KIP   NP HAL  M  TA  L  + + VNETF+LHLF+ ALS+EYAMTKH LRH
Sbjct:  163 SFSSWLEDFFMAANTANLLELFEEGGGEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRH 324
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5JXM0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.370e-45
Identity = 84/163 (51.53%), Postives = 106/163 (65.03%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W EDF   AK  NL + FE+ G  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S  IP   NP HAL  M  TA  L  + + V+ETF+LHLF+ ALS+EYA+TKH LRH
Sbjct:  126 SFSSWLEDFFMAAKTANLLELFEEEGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKPLTSKTIPMAENPQHALNSMLATAESLSKRGLDVSETFVLHLFLNALSNEYALTKHALRH 287
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5L6T6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T6_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 6.150e-45
Identity = 88/163 (53.99%), Postives = 108/163 (66.26%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W EDFL  A   NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S KIP   NP HAL  M  TA  L  + + VNETF+LHLF+ ALS+EYAMTKH LRH
Sbjct:  397 SFSSWLEDFLMAANTANLLELFEEGGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRH 558
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5JKE6_9PHAE (DAO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE6_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.520e-44
Identity = 87/163 (53.37%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W EDFL  A   NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S KIP   NP HAL  M  TA  L  + + VNETF+LHLF+ ALS+EYAMTKH  RH
Sbjct:  601 SFSSWLEDFLMAANTANLLELFEEGGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKPLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHAFRH 762
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.860e-44
Identity = 87/163 (53.37%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W EDF   A   NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S KIP   NP HAL  M  TA  L  + + VNETF+LHLF+ ALS+EYAMTKH LRH
Sbjct:  162 SFSSWLEDFFMAANTANLLELFEEGGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRH 323
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5K8M7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 3.260e-43
Identity = 86/163 (52.76%), Postives = 106/163 (65.03%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +FS W E FL      NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y PES++   D+++ L S KIP   NP HAL  M  TA  L  + + VNETF+LHLF+ ALS+EYAMTKH LRH
Sbjct:  163 SFSSWLEYFLMATNTANLLELFEEGGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNETFVLHLFLDALSNEYAMTKHALRH 324
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5K1E1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E1_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.060e-43
Identity = 83/162 (51.23%), Postives = 105/162 (64.81%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLR 486
            +FS W ED    A   NL + FE+GG  IPV +  +SK  L   +P  +V+LAFH WNFLR AL  E+DR IMKRA SP   LREL  +Y P+S++   D+++ L S KIP   NP HAL  M  TA  L  + + V ETF+LHLF+ ALS+EYAMTKH+LR
Sbjct:   31 SFSSWLEDLFMAADTANLLEFFEEGGAEIPV-NSGQSKVQLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGLYDPKSSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVYETFVLHLFLDALSNEYAMTKHDLR 191
[Close]
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Match: A0A6H5K294_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K294_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 4.550e-42
Identity = 87/164 (53.05%), Postives = 109/164 (66.46%), Query Frame = 1 
Query:    1 NFSPWYEDFLQMAKAVNLSQTFEDGGP-GIPVYDKSKSKAALCSEFPPSQVDLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQDDMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAALSDEYAMTKHNLRH 489
            +F+ W  DF   A   NL + FE+ G   IPV +  KSK +L  ++   QV+L FH WNFL  + VKE DRKI+KR+ +PQ  LREL  I+ PES+V   +D++ L STKI    NP +AL EM  TA  L +K + VNETFLLHLF+ ALSDEYAMTKHNLRH
Sbjct:  135 DFNEWLNDFRMAANGANLLEQFEESGSLEIPV-NSGKSKFSLSQQYRSEQVELEFHAWNFLSHS-VKERDRKIVKRSETPQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENPQNALNEMLQTAKSLTEKGLTVNETFLLHLFLDALSDEYAMTKHNLRH 296
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16867.4611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWS2_9PHAE1.430e-4653.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZG8_9PHAE1.730e-4653.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J739_9PHAE2.530e-4553.37CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JXM0_9PHAE5.370e-4551.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6T6_9PHAE6.150e-4553.99CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKE6_9PHAE2.520e-4453.37DAO domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5JRY9_9PHAE2.860e-4453.37CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]
A0A6H5K8M7_9PHAE3.260e-4352.76CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K1E1_9PHAE7.060e-4351.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K294_9PHAE4.550e-4253.05CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16867contigL-elsbetiae_contig16867:1544..2032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.956018-CDS-L-elsbetiae_contig16867:1543..20321622815700.956018-CDS-L-elsbetiae_contig16867:1543..2032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16867 1544..2032 +
1691683046.6524403-CDS-L-elsbetiae_contig16867:1543..20321691683046.6524403-CDS-L-elsbetiae_contig16867:1543..2032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16867 1544..2032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16867.4611.1prot_L-elsbetiae_contig16867.4611.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16867 1544..2032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16867.4611.1

>prot_L-elsbetiae_contig16867.4611.1 ID=prot_L-elsbetiae_contig16867.4611.1|Name=mRNA_L-elsbetiae_contig16867.4611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
NFSPWYEDFLQMAKAVNLSQTFEDGGPGIPVYDKSKSKAALCSEFPPSQV
DLAFHGWNFLRTALVKEEDRKIMKRAMSPQQVLRELVAIYAPESTVSMQD
DMEKLMSTKIPTETNPLHALREMEVTAGRLDDKQIAVNETFLLHLFVAAL
SDEYAMTKHNLRH
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mRNA from alignment at L-elsbetiae_contig16867:1544..2032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16867.4611.1 ID=mRNA_L-elsbetiae_contig16867.4611.1|Name=mRNA_L-elsbetiae_contig16867.4611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=489bp|location=Sequence derived from alignment at L-elsbetiae_contig16867:1544..2032+ (Laminarionema elsbetiae ELsaHSoW15)
AATTTCTCCCCGTGGTATGAGGATTTCCTTCAGATGGCCAAGGCTGTAAA
TCTGTCGCAAACGTTCGAAGACGGGGGGCCTGGAATCCCCGTGTACGACA
AGAGCAAGTCCAAAGCTGCACTCTGCAGCGAATTCCCTCCCAGTCAAGTC
GACCTTGCGTTCCACGGATGGAATTTCTTGAGGACTGCTCTTGTGAAAGA
AGAAGATAGGAAGATAATGAAGAGAGCTATGTCACCACAGCAGGTACTTC
GGGAGTTAGTAGCAATCTACGCCCCAGAATCAACAGTGTCCATGCAAGAT
GATATGGAGAAACTGATGTCGACCAAAATTCCCACCGAGACGAATCCCCT
GCATGCACTTCGTGAAATGGAAGTAACTGCCGGTCGCTTGGATGATAAGC
AAATCGCAGTCAACGAAACTTTCCTCCTGCACCTTTTCGTGGCCGCCCTT
TCCGACGAGTATGCCATGACGAAGCACAACCTACGACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16867:1544..2032+

>mRNA_L-elsbetiae_contig16867.4611.1 ID=mRNA_L-elsbetiae_contig16867.4611.1|Name=mRNA_L-elsbetiae_contig16867.4611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig16867:1544..2032+ (Laminarionema elsbetiae ELsaHSoW15)
AATTTCTCCCCGTGGTATGAGGATTTCCTTCAGATGGCCAAGGCTGTAAA
TCTGTCGCAAACGTTCGAAGACGGGGGGCCTGGAATCCCCGTGTACGACA
AGAGCAAGTCCAAAGCTGCACTCTGCAGCGAATTCCCTCCCAGTCAAGTC
GACCTTGCGTTCCACGGATGGAATTTCTTGAGGACTGCTCTTGTGAAAGA
AGAAGATAGGAAGATAATGAAGAGAGCTATGTCACCACAGCAGGTACTTC
GGGAGTTAGTAGCAATCTACGCCCCAGAATCAACAGTGTCCATGCAAGAT
GATATGGAGAAACTGATGTCGACCAAAATTCCCACCGAGACGAATCCCCT
GCATGCACTTCGTGAAATGGAAGTAACTGCCGGTCGCTTGGATGATAAGC
AAATCGCAGTCAACGAAACTTTCCTCCTGCACCTTTTCGTGGCCGCCCTT
TCCGACGAGTATGCCATGACGAAGCACAACCTACGACACAATTTCTCCCC
GTGGTATGAGGATTTCCTTCAGATGGCCAAGGCTGTAAATCTGTCGCAAA
CGTTCGAAGACGGGGGGCCTGGAATCCCCGTGTACGACAAGAGCAAGTCC
AAAGCTGCACTCTGCAGCGAATTCCCTCCCAGTCAAGTCGACCTTGCGTT
CCACGGATGGAATTTCTTGAGGACTGCTCTTGTGAAAGAAGAAGATAGGA
AGATAATGAAGAGAGCTATGTCACCACAGCAGGTACTTCGGGAGTTAGTA
GCAATCTACGCCCCAGAATCAACAGTGTCCATGCAAGATGATATGGAGAA
ACTGATGTCGACCAAAATTCCCACCGAGACGAATCCCCTGCATGCACTTC
GTGAAATGGAAGTAACTGCCGGTCGCTTGGATGATAAGCAAATCGCAGTC
AACGAAACTTTCCTCCTGCACCTTTTCGTGGCCGCCCTTTCCGACGAGTA
TGCCATGACGAAGCACAACCTACGACAC
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