mRNA_L-elsbetiae_contig16866.4610.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16866.4610.1
Unique NamemRNA_L-elsbetiae_contig16866.4610.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16866.4610.1 vs. uniprot
Match: D7FLF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF4_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.350e-38
Identity = 56/75 (74.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 EMSLEDAILCDNGPKEISIFCHEAPEIKIVDLSQEHRGNNECLILNINAPDVSSQLVLKCDGSVDDEGFGWGEEW 225
            +MS+EDAILCDNGPKEISIF HE PE+KIVDL+Q+HR NN+CL+LNIN+PDVSS++VLKCDGS+  + FGWGE+W
Sbjct:   86 DMSMEDAILCDNGPKEISIFFHENPEVKIVDLAQDHRNNNDCLVLNINSPDVSSKVVLKCDGSISGDDFGWGEDW 160
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BLAST of mRNA_L-elsbetiae_contig16866.4610.1 vs. uniprot
Match: A0A7S1CH73_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH73_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.800e-16
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   16 DAILCDNGPKEISIFCHEAPEIKIVDLSQEHRGNNECLILNINAPDVSSQLVLKCDGSVDD 198
            DA   DNGPKEIS+FC +  +I I DL+ + R NNEC++LN+N P VSS+LVL CDG+  D
Sbjct:  123 DADSADNGPKEISMFCPKDMQIAIADLNDDERDNNECMVLNLNGPGVSSRLVLFCDGTHSD 183
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BLAST of mRNA_L-elsbetiae_contig16866.4610.1 vs. uniprot
Match: A0A7S2R3B7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3B7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.630e-11
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   31 DNGPKEISIFCHEAPEIKIVDLSQEHRGNNECLILNINAPDVSSQLVLKCDG 186
            D GPKEISIFC +AP++KI DL +     NEC +L IN+P++ S+L + C+G
Sbjct:   55 DLGPKEISIFCPQAPDVKISDLPRHAVEENECFVLQINSPELHSRLSINCNG 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16866.4610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLF4_ECTSI1.350e-3874.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1CH73_9STRA3.800e-1657.38Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2R3B7_9STRA1.630e-1151.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16866contigL-elsbetiae_contig16866:2594..3186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16866.4610.1prot_L-elsbetiae_contig16866.4610.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16866 2597..3186 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.891689-UTR-L-elsbetiae_contig16866:2593..25961622815700.891689-UTR-L-elsbetiae_contig16866:2593..2596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16866 2594..2596 +
1691683046.6191618-UTR-L-elsbetiae_contig16866:2593..25961691683046.6191618-UTR-L-elsbetiae_contig16866:2593..2596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16866 2594..2596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.9082403-CDS-L-elsbetiae_contig16866:2596..27211622815700.9082403-CDS-L-elsbetiae_contig16866:2596..2721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16866 2597..2721 +
1691683046.6309614-CDS-L-elsbetiae_contig16866:2596..27211691683046.6309614-CDS-L-elsbetiae_contig16866:2596..2721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16866 2597..2721 +
1622815700.9198618-CDS-L-elsbetiae_contig16866:3083..31861622815700.9198618-CDS-L-elsbetiae_contig16866:3083..3186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16866 3084..3186 +
1691683046.6415668-CDS-L-elsbetiae_contig16866:3083..31861691683046.6415668-CDS-L-elsbetiae_contig16866:3083..3186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16866 3084..3186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16866.4610.1

>prot_L-elsbetiae_contig16866.4610.1 ID=prot_L-elsbetiae_contig16866.4610.1|Name=mRNA_L-elsbetiae_contig16866.4610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MSLEDAILCDNGPKEISIFCHEAPEIKIVDLSQEHRGNNECLILNINAPD
VSSQLVLKCDGSVDDEGFGWGEEWR*
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mRNA from alignment at L-elsbetiae_contig16866:2594..3186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16866.4610.1 ID=mRNA_L-elsbetiae_contig16866.4610.1|Name=mRNA_L-elsbetiae_contig16866.4610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=593bp|location=Sequence derived from alignment at L-elsbetiae_contig16866:2594..3186+ (Laminarionema elsbetiae ELsaHSoW15)
GAAATGAGTTTGGAGGATGCAATACTCTGCGACAACGGCCCGAAAGAGAT
ATCCATCTTCTGCCATGAGGCTCCTGAGATAAAGATCGTCGATCTGTCTC
AAGAACATCGCGGGAACAATGAATGCCTGTAAGTCCACGAGTGCGATACA
AATCCAACGAAATAGCTGCACATCGCTCCTTCCTCGAGGTGTTCGCAGGG
TGCCATGTCCCCAGCCGCTTCGGGCCCAATGCCCACCCGACATACTGTGT
TTTTTTCACTGCGAACTGCTTGCTCAGTGCGAATGGTCTGTGAATGTTCA
AGGGATCTAATTGTTTGCAGCTGTCATTCCGGCGAGCGTTTGTATCAGTG
TGGAAGACACAACGAGGGAATTTTTCAGCTTGATCTGGGCGCTTTGTATT
ATTCCTTGGGTGATGGGTTTAGCTCGGCCTCGTTTACTTGATCTTTTTTC
CCTTTCGTTCCGACCTCGCCGCACCCTCTTCTTTTTTCAGCATCCTTAAC
ATCAACGCACCGGATGTTTCATCACAATTGGTCTTGAAGTGCGACGGAAG
CGTTGACGACGAAGGCTTTGGTTGGGGGGAAGAATGGCGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16866:2594..3186+

>mRNA_L-elsbetiae_contig16866.4610.1 ID=mRNA_L-elsbetiae_contig16866.4610.1|Name=mRNA_L-elsbetiae_contig16866.4610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig16866:2594..3186+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTTTGGAGGATGCAATACTCTGCGACAACGGCCCGAAAGAGATATC
CATCTTCTGCCATGAGGCTCCTGAGATAAAGATCGTCGATCTGTCTCAAG
AACATCGCGGGAACAATGAATGCCTATGAGTTTGGAGGATGCAATACTCT
GCGACAACGGCCCGAAAGAGATATCCATCTTCTGCCATGAGGCTCCTGAG
ATAAAGATCGTCGATCTGTCTCAAGAACATCGCGGGAACAATGAATGCCT
CATCCTTAACATCAACGCACCGGATGTTTCATCACAATTGGTCTTGAAGT
GCGACGGAAGCGTTGACGACGAAGGCTTTGGTTGGGGGGAAGAATGGCGC
TGACATCCTTAACATCAACGCACCGGATGTTTCATCACAATTGGTCTTGA
AGTGCGACGGAAGCGTTGACGACGAAGGCTTTGGTTGGGGGGAAGAATGG
CGCTGA
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