mRNA_L-elsbetiae_contig1686.4609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1686.4609.1
Unique NamemRNA_L-elsbetiae_contig1686.4609.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: D7G1P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P8_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 4.260e-130
Identity = 221/265 (83.40%), Postives = 231/265 (87.17%), Query Frame = 1
Query:   19 MLANLARAAARPSLGLVRRAAA-TAKC--PTATATAVS-VPRNLRCASTLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCDVEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRVNPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            MLANLARAAARPS GLVRRAAA T KC  P+  A AVS  P+NLRCAS+LSEVLKAEIEEERLV+FDEDVASMVKELGKKGITVKDEPG+SLVRLFGPGVGDEKV+VEFDCDVEGDGDDGWEDDL                 XXXXXXXXXX     ++DM+GPGYRFTATITKGAKKMVLSGSA DTIAVHGIR+NPANVEWD SLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK
Sbjct:    1 MLANLARAAARPSAGLVRRAAAATTKCSSPSVPAAAVSSAPKNLRCASSLSEVLKAEIEEERLVAFDEDVASMVKELGKKGITVKDEPGLSLVRLFGPGVGDEKVSVEFDCDVEGDGDDGWEDDLEDDSDLSLESGEQQQGKXXXXXXXXXX-----EDDMIGPGYRFTATITKGAKKMVLSGSATDTIAVHGIRINPANVEWDFSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 260          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: W2NNX2_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NNX2_PHYPR)

HSP 1 Score: 92.8 bits (229), Expect = 1.240e-17
Identity = 84/222 (37.84%), Postives = 119/222 (53.60%), Query Frame = 1
Query:  148 STLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCD--VEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRV--NPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            S++S +LK EIEEE+   F+E+    ++   +K   +++ PG   V L G  VG + + ++F+    VE + D+ +EDD        XXXXXXXXXXX                    PG RFTA IT+  K M     A   + V  +R   + A    D +LY GP+F +L+ D+QD  Y++L ERNIDD+LA FI  +AD KEQ EY  +L +   FVK
Sbjct:   49 SSISNLLKREIEEEKANCFEEEELENLRLKVEKVFKLQETPGCMDVVLQGT-VGADSIKIKFNAQDTVELEEDEDYEDDEGEDSTEMXXXXXXXXXXXEL------------------PGIRFTADITRDNKGMQFDCVASSNLTVERLRYLKDFAKDAEDETLYFGPNFIDLELDVQDQFYNFLAERNIDDELAQFITQFADFKEQREYLAFLEDTETFVK 251          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: A0A0W8C211_PHYNI (Mitochondrial acidic protein mam33 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C211_PHYNI)

HSP 1 Score: 92.8 bits (229), Expect = 3.760e-17
Identity = 84/222 (37.84%), Postives = 119/222 (53.60%), Query Frame = 1
Query:  148 STLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCD--VEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRV--NPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            S++S +LK EIEEE+   F+E+    ++   +K   +++ PG   V L G  VG + + ++F+    VE + D+ +EDD        XXXXXXXXXXX                    PG RFTA IT+  K M     A   + V  +R   + A    D +LY GP+F +L+ D+QD  Y++L ERNIDD+LA FI  +AD KEQ EY  +L +   FVK
Sbjct:  115 SSISNLLKREIEEEKANCFEEEELENLRLKVEKVFKLQETPGCMDVVLQGT-VGADSIKIKFNAQDTVELEEDEDYEDDEGEDSTEMXXXXXXXXXXXEL------------------PGIRFTADITRDNKGMQFDCVASSNLTVERLRYLKDFAKDAEDETLYFGPNFIDLELDVQDQFYNFLAERNIDDELAQFITQFADFKEQREYLAFLEDTETFVK 317          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: K3WAS0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAS0_GLOUD)

HSP 1 Score: 90.5 bits (223), Expect = 6.010e-17
Identity = 104/269 (38.66%), Postives = 144/269 (53.53%), Query Frame = 1
Query:   19 MLANLARAAARPSLGLVRRAAATAKCPTATATAVSVPR----NLRCASTLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDC-DVEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRVNP---ANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            MLA +ARAA   S+ + +R            T+V+ P      LR  S+L+ +LK EIEEE+   F+ +    +     K  T+K+ PG   + L G  VG + + ++FD  DV    +D  ++D XXXXXXXXXXXXXXXXX               +ED L PG RF A +T+  + +     A   + V  +R      AN E D+ LY GP+F +++ D+Q+  YDYL ER IDDDLA FI  YAD KEQ EY ++L     F+K
Sbjct:    1 MLARVARAA---SVSMAKR------------TSVAAPALGAFQLREKSSLTSLLKREIEEEKGNCFEGEELEELHAKMNKIFTLKETPGNMEIVLTGQ-VGTDSIRIKFDSQDVVELEEDYVDEDXXXXXXXXXXXXXXXXXXG--------------EEDEL-PGIRFVADVTRDNQGLQFECVASSNLTVERVRFLSDFSANAEKDN-LYFGPNFADMELDVQEKFYDYLAERKIDDDLAQFITQYADLKEQREYLSFLESAETFIK 237          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: A0A6A3T160_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T160_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.600e-16
Identity = 91/222 (40.99%), Postives = 123/222 (55.41%), Query Frame = 1
Query:  148 STLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCD--VEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRV--NPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            S+L  VLK E+EEE+   F+E     ++   +    +++ PG   V L G  VGD+ + ++F+    VE + DD   +D XXXXXXXXXXXXXXXXXX                D L PG RFTA IT+  K +     A   + V  +R   + A    D +LY GP+F +L+ D+QD  Y YL +R IDD+LA FI  +AD KEQ EYT +L +   FVK
Sbjct:   31 SSLVSVLKREVEEEKANCFEEPEFEELRLKVESVFKLQEAPGCMEVLLQGA-VGDDSIKIKFNAQDTVELEEDDEEYNDFXXXXXXXXXXXXXXXXXX----------------DEL-PGVRFTADITRDNKGLQFDCVASSNLTVERVRYLNDFAKDAEDETLYFGPNFIDLELDVQDQFYSYLAQRKIDDELAQFITQFADLKEQREYTAFLEDAESFVK 234          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: D0MS15_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MS15_PHYIT)

HSP 1 Score: 87.8 bits (216), Expect = 4.890e-16
Identity = 97/219 (44.29%), Postives = 127/219 (57.99%), Query Frame = 1
Query:  151 TLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCDVEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRV--NPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            +LS  LK EIEEE+   F+E+    ++   +K  T+++ PG   + L G  VG E + ++F+             D     XXXXXXXXXXXXXXXXXXXXXXXXXXXX+     PG RFTA IT+  K M     A   + V  +R   + A    D +LY GP+F +L+ D+QD  Y YL ERNIDD+LA FI  +AD KEQ EY  +L +   F+K
Sbjct:   32 SLSTFLKREIEEEKANCFEEEELENLRLKVEKAFTLQETPGCMEIVLKGS-VGAESIKIKFNAQ-----------DTVELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXEL----PGIRFTADITRDDKGMQFDCVASSNLTVERLRYLDDFAKNAEDETLYFGPNFIDLELDVQDQFYSYLAERNIDDELAQFITQFADYKEQREYLAFLEDTETFIK 234          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: G4YEF0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEF0_PHYSP)

HSP 1 Score: 86.3 bits (212), Expect = 1.670e-15
Identity = 87/222 (39.19%), Postives = 125/222 (56.31%), Query Frame = 1
Query:  148 STLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCD--VEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIR--VNPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            S+L+ VLK E++EE+   F+E     ++   +    +++ PG   + L G  +GD+ + ++F+    VE + D+ + DD XXXXXXXXXXXXXXXXXX                D L PG RFTA IT+  + +     A   + V  +R   + A    D +LY GP+F +L+ D+QD  Y YL +R IDD+LA FI  +AD KEQ EYT +L +   FVK
Sbjct:   31 SSLASVLKRELDEEKANCFEEPEMEELRLKVESVFKLQETPGCMDIVLNGT-MGDDSIKIKFNAQDTVELEDDEEYGDDXXXXXXXXXXXXXXXXXXX----------------DEL-PGVRFTADITRDNQGLQFDCVASSNVTVERVRYLADFAKEAEDETLYFGPNFIDLELDVQDHFYRYLADRKIDDELAQFITQFADLKEQREYTAFLEDAETFVK 234          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: A0A329SUP1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUP1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.210e-15
Identity = 95/220 (43.18%), Postives = 127/220 (57.73%), Query Frame = 1
Query:  148 STLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCDVEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRV--NPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            ++L  VLK EIEEE+   F+E     ++   +K  ++++ PG   V L G  VG + + ++F+           +D +      XXXXXXXXXXXXXXXXXXXXXXXXXX+     PG RFTA IT+  K M     A   + V  +R   + A    D +LY GP+F +L+ D QD  Y+YL ERNIDD+LA FI  +AD KEQ EY  +L +   FVK
Sbjct:   32 ASLVNVLKREIEEEKANCFEEQELENLRLKVEKVFSLQETPGCMDVVLQGT-VGADSIKIKFNA----------QDTVELEEDEXXXXXXXXXXXXXXXXXXXXXXXXXXEL----PGIRFTADITRDNKGMQFDCVASSNLTVERLRYLKDFAKEAEDETLYFGPNFIDLELDAQDKFYEYLAERNIDDELAQFITQFADYKEQREYLAFLEDTETFVK 236          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: A0A484E3R8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3R8_BRELC)

HSP 1 Score: 88.6 bits (218), Expect = 4.610e-15
Identity = 91/222 (40.99%), Postives = 123/222 (55.41%), Query Frame = 1
Query:  148 STLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCD--VEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRV--NPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            S+L+ +L+ EI EE+  SF+E+    ++   +K   +K+ P    V L G  VG + + + F+    VE D D+ + DD XXXXXXXXXXXXXXXXXXX              ED L PG RFTA I +  K +     A   + +  +R   +    + + S Y GPDF +L+ D+QD  Y YL +R+IDDDLA FI  YAD KEQ EY  +L     FVK
Sbjct:  309 SSLASLLEREIREEKGNSFEEEELEQLRLRFEKVFKLKESPECMNVVLQGT-VGSDSIKIHFNAQDTVELDEDEDYSDDXXXXXXXXXXXXXXXXXXXX--------------EDEL-PGIRFTADILRNNKGLQFDCVATSNLTIERLRFFHDFEKNDKNESQYYGPDFIDLELDVQDKFYSYLADRHIDDDLAQFITQYADLKEQREYLAFLENAESFVK 514          
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Match: A0A8K1CD47_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD47_PYTOL)

HSP 1 Score: 85.1 bits (209), Expect = 5.250e-15
Identity = 93/220 (42.27%), Postives = 122/220 (55.45%), Query Frame = 1
Query:  148 STLSEVLKAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEKVTVEFDCDVEGDGDDGWEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIR--VNPANVEWDSSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYTNWLGEVAKFVK 801
            S+L+ +LK EIEEE+   F+ D    ++    K   +K+ PG   V L G   GD  + + FD     +     E+D XXXXXXXXXXXXXXXXXXXXXXXX              PG RF A IT+  + +     A   + +  +R   N A      +LY GP F +L+ DLQ++ Y YL ERN+DD+L+ FI  YAD KEQ EY ++L   AKFVK
Sbjct:   44 SSLTTILKREIEEEKGNCFEGDELEELQAKIAKVFAIKETPGDMEVTLEGEVKGD-SIRIRFDAQDSVE----LEEDYXXXXXXXXXXXXXXXXXXXXXXXXEL------------PGIRFMAEITRENQGLQFECVASSNLTIERVRYLTNFAEDVDKDNLYFGPSFIDLELDLQESFYKYLAERNVDDELSQFIAQYADLKEQREYLSFLEHAAKFVK 246          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1686.4609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1P8_ECTSI4.260e-13083.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W2NNX2_PHYPR1.240e-1737.84Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A0W8C211_PHYNI3.760e-1737.84Mitochondrial acidic protein mam33 n=1 Tax=Phytoph... [more]
K3WAS0_GLOUD6.010e-1738.66Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A3T160_9STRA3.600e-1640.99Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D0MS15_PHYIT4.890e-1644.29Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
G4YEF0_PHYSP1.670e-1539.19Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A329SUP1_9STRA3.210e-1543.18Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A484E3R8_BRELC4.610e-1540.99Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A8K1CD47_PYTOL5.250e-1542.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1686contigL-elsbetiae_contig1686:11971..16174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.9
Seed ortholog evalue1.2e-106
Seed eggNOG ortholog2880.D7G1P8
Preferred nameMAM33
KEGG koko:K12812,ko:K15414
KEGG Pathwayko03013,ko03015,ko03040,ko05164,ko05168,map03013,map03015,map03040,map05164,map05168
KEGG ModuleM00406,M00430
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003676,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0006417,GO:0008150,GO:0008152,GO:0008494,GO:0009060,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015980,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032268,GO:0032270,GO:0034248,GO:0034250,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045182,GO:0045333,GO:0045727,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0070131,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:2000112
EggNOG free text desc.positive regulation of mitochondrial translation
EggNOG OGsKOG2536@1,KOG2536@2759
EC3.6.4.13
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko03019,ko03041
Ec32 ortholog descriptionMitochondrial glycoprotein
Ec32 orthologEc-12_006720.1
Exons5
Model size1480
Cds size786
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.771591-UTR-L-elsbetiae_contig1686:11970..126461622815700.771591-UTR-L-elsbetiae_contig1686:11970..12646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1686 11971..12646 -
1691683046.547897-UTR-L-elsbetiae_contig1686:11970..126461691683046.547897-UTR-L-elsbetiae_contig1686:11970..12646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1686 11971..12646 -
1622815700.8561244-UTR-L-elsbetiae_contig1686:16156..161741622815700.8561244-UTR-L-elsbetiae_contig1686:16156..16174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1686 16157..16174 -
1691683046.6089845-UTR-L-elsbetiae_contig1686:16156..161741691683046.6089845-UTR-L-elsbetiae_contig1686:16156..16174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1686 16157..16174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.7815187-CDS-L-elsbetiae_contig1686:12646..127811622815700.7815187-CDS-L-elsbetiae_contig1686:12646..12781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 12647..12781 -
1691683046.558592-CDS-L-elsbetiae_contig1686:12646..127811691683046.558592-CDS-L-elsbetiae_contig1686:12646..12781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 12647..12781 -
1622815700.7914283-CDS-L-elsbetiae_contig1686:13548..137181622815700.7914283-CDS-L-elsbetiae_contig1686:13548..13718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 13549..13718 -
1691683046.5701962-CDS-L-elsbetiae_contig1686:13548..137181691683046.5701962-CDS-L-elsbetiae_contig1686:13548..13718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 13549..13718 -
1622815700.8023176-CDS-L-elsbetiae_contig1686:14151..143321622815700.8023176-CDS-L-elsbetiae_contig1686:14151..14332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 14152..14332 -
1691683046.578107-CDS-L-elsbetiae_contig1686:14151..143321691683046.578107-CDS-L-elsbetiae_contig1686:14151..14332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 14152..14332 -
1622815700.8178725-CDS-L-elsbetiae_contig1686:14904..150111622815700.8178725-CDS-L-elsbetiae_contig1686:14904..15011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 14905..15011 -
1691683046.5875313-CDS-L-elsbetiae_contig1686:14904..150111691683046.5875313-CDS-L-elsbetiae_contig1686:14904..15011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 14905..15011 -
1622815700.836724-CDS-L-elsbetiae_contig1686:15963..161561622815700.836724-CDS-L-elsbetiae_contig1686:15963..16156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 15964..16156 -
1691683046.5994039-CDS-L-elsbetiae_contig1686:15963..161561691683046.5994039-CDS-L-elsbetiae_contig1686:15963..16156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 15964..16156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1686.4609.1prot_L-elsbetiae_contig1686.4609.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1686 12647..16156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1686.4609.1

>prot_L-elsbetiae_contig1686.4609.1 ID=prot_L-elsbetiae_contig1686.4609.1|Name=mRNA_L-elsbetiae_contig1686.4609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=262bp
MLANLARAAARPSLGLVRRAAATAKCPTATATAVSVPRNLRCASTLSEVL
KAEIEEERLVSFDEDVASMVKELGKKGITVKDEPGVSLVRLFGPGVGDEK
VTVEFDCDVEGDGDDGWEDDLDDDSDLSLAAAEQQQQPAAAGNGGEGEEQ
DESDEDMLGPGYRFTATITKGAKKMVLSGSAKDTIAVHGIRVNPANVEWD
SSLYRGPDFNELDPDLQDALYDYLKERNIDDDLAAFICMYADQKEQNEYT
NWLGEVAKFVK*
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mRNA from alignment at L-elsbetiae_contig1686:11971..16174-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1686.4609.1 ID=mRNA_L-elsbetiae_contig1686.4609.1|Name=mRNA_L-elsbetiae_contig1686.4609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4204bp|location=Sequence derived from alignment at L-elsbetiae_contig1686:11971..16174- (Laminarionema elsbetiae ELsaHSoW15)
CCGCGAGCCCATCTGAATATGTTGGCTAACCTGGCTCGTGCTGCAGCACG GCCGTCGCTGGGGCTGGTTCGAAGAGCTGCAGCGACGGCGAAGTGCCCAA CTGCTACCGCTACTGCTGTCTCCGTGCCCAGGAATCTGCGATGCGCGAGC ACCCTGAGCGAGGTGTTGAAAGCGGAGATTGAAGAGGAGCGTCTCGTGTC ATTTGACGAAGGTGAAGGTTGCGAGGCGCGATCAGGCCGTCTTTACGTGT GCATTCTACGGAGTCGTTGTTGCGTTGCGTTTTTGGATTCAATCCAAATC TACGGGTGGTTCAGGAGGTCCCCGACACGTGTGGCGGTTGACCTTGAGTC CTTCCAGAAGCAGCGCCTGTGACGGCGGTGGGCTGGCTATCACGTGAATA TTCGTGGTATCGCTTCGCTGCTCGCTGCTGTCAATTTCTCTTCTTTTCGA AGACTGTTGTTGCTCGCAACAACTTACCACCTCGATTGATACGTAAGTAC CAGTTTGCTGTTGTCTGGAGAGCTCTGGCCTGTGGCTGCCACTGTATTCC ACCGCCACACCTCATAGCATCGCACAGCCTCACGATGTTCTGTGGGCTTT CGGTGTTGTGCGCCTTCGTTGGCTGCGTAGCTTCGTGTCGATGTATCCCA ACATGCATGCCACGCGTACTGCTGTCGTTGTTCCAATCTCTGGGCAACCT CCGAGCAACCTCTGAGCACGTACTACTGTTTGTCTGTTGCCTCGACACAC CGACCTACATAAATACATGCGTTGTAGTGCATACCGGTAAACCGGTAGTA CCGCCGTAATATCCCTCGAGAACGCCCCAGGGTGTGAACAGTCTTCAAAG CCATATTTCTCCGCAATGGGTGGGTTGCTATATACTGTCGAGCGATGTGC CCCTTGGAAAGATCTACGTCGAGACCGTTCCAAATTCAATTTTTATGTTG ATCGTGTACCCACCCTCTCGGTTGTGGAGAAAATCGGCTTTGAAAAATGT TTACATCCCGGGGCGTTGGATATTACGGTAGTCTCCCGTAAAGCGGGAGC GGGTCGCGACCCCTGCGGTGGACCCGCTCCGCCCCGCTGTGATGGCGCCT GTTGACCACGCAAGCCTCTCTGTTCGGATACGCCCCGAAACAAAACCTTG CTGATCTGCTCAGACGTGGCGTCTATGGTGAAGGAGCTCGGCAAGAAGGG CATCACAGTCAAGGACGAGCCGGGAGTGTCGTTGGTGCGCCTCTTTGGAC CCGGCGTTGGCGATGAGAAGGTATTTCTTACCGTATGCATCACGCGTATA CTGCGACATTATCACCTGCGTGTATGCAAGACCCCGATCGCCACCCCCGT CCCAGCCGCGGACCATGTGGGGGCCCCCTATTATCTTGAGATGGAGAGAG AGACACACGGGTTGGGTGGCCTGTTTATGCCTCTCAAACGGCGGCTTTGG GAGTGTAATCCAGACGAGAGTTCGGTGCAAAAACATACAGCACGCCCAGC TGCGCACACCTCAGATTTGCTACACAGCTTATCTCTACAGCAGTACACGG CAGCTGTCCAAAGCGGACAATGACTCTCGTGTTCCACGCCGGCCATCGCA CGTCTTAAAAGTGTTGATCGATACAACAACAGCAAAGCGGGCTGTTTGGG CACGGATGAACGAACCCCATTCGCGTGGCCGGCCCACCACGTAACAGCGG TTGTCCCCGGCTTCACGCAACATCTCTCCCGGTGAAACGTCGAATAAATC TAAGCGACACATGTATACATGACGTACATGCACACCGCGGTGCCTCCTTC CTCCTCTCTGTTCTGCCCGTTTTTGCCTGCCGGCTCACACAGGTGACGGT GGAGTTCGACTGCGACGTCGAGGGCGATGGAGACGACGGCTGGGAAGACG ACCTTGACGACGACTCCGACTTGAGCTTGGCAGCGGCCGAGCAGCAGCAG CAGCCGGCGGCGGCGGGGAACGGGGGGGAGGGCGAGGAACAGGACGAGAG CGACGAGGACATGCTCGGCCCAGGCGAGTGAAAACGGACGAGGGTCTGTC GTGGGTGTTGGGGGTACAGTAGGTGGTGTCTGGAAGGGAAGCCATCGCGA AACCGTACGAAGAAGTCGTCCGGACGTCTTGGGTGGACGGAATGAATCCC GGCTCGCTCATCGCTGGATGGTTGTTGCGCTTTCCGTGTGTCTGTGAAAA GCAGGAATGGCGGCTCTGGCGGATACATGCGTAGATTCGATCGGCTAGAC CTCCCGACACGATATGTATGTATGCACTTGATCGCCCTGTTCTGGCACCT TGCGGCAGAAGAGGGAGGTTTAGCGTTTCGTGTTTCCAACAAGCAGGCCC TTCCCTGCCCCGCCGAGTATGTACGGCATGCATGCACATGAGGTTTTTGA GTAGTTGCCCCCTCCGCTCCCGCCTCCCGCCCCCCCGTCTCTGCTGGCGT CCGCAGGCTACCGCTTCACGGCGACAATCACAAAGGGGGCGAAGAAGATG GTGTTGTCGGGATCGGCCAAGGACACCATCGCCGTGCATGGCATCCGCGT CAACCCGGCGAACGTGGAGTGGGACTCGTCTTTGTACAGAGGTCCCGACT TCAACGAGCTCGACCCCGATTTGCAGGTGCGGTGGTGGTGGTGGTGTCGG GGGCGATGCCAGCACGCGCGAGTTGATTGGCCAAGCACTCGAGTCGGCTG GTGCAACCGGTTCAGTTCAACCCGTTGGGTTGGAGCAAAGAACAGCGGGC CTCCATCGCGCGTACCCGTGTGGGCTTTTTTGTCCTGCATGCGGCACGAC GTACGGAGGCTTCGACTGGTGTGGTGTCTGCGAGTGATTGGCGGTCAGAC GTCGCCGCTCGACCAGTGTGTTTCGCCTGGTTGTTTGTGGTGGGTTGGTC AGCTTCTCGTCCTCTTCGTCTTCCGCGAAGTGTTTGCATGCTCTTTTTGG TGATATCCGAAGAATACTATGTACATGTACGTACGGAGGTCATTTTGTTC TCTGGCCCGCTGCTTCTGGGCCCCGTCGAAGCACTTGGGCTTTTTGTCAG TGCTGGCTGATTCAAAACATGATCCGCAGTCTCATCTCAGCACACGTGTG CCCAGCACTTGCGAATGTTAGTGTTTGGCACACGCTGCACGCACGCTCCT TCGTCTTCAAAAATAACGGCGAGAGAAGCGAGGATGAAATAAAATGCGAC CCATCTCTCCGCTTTCTTCCCTTCCCTCTCTCTCTGCCTACCTACTACTA CTACTATTGTGTTGCCTCGCTGTCGTGGGTTCTCTGAGCACCCGAGCAGC AAGCACCTTGTTTCATGATTTTCTTACATGGTGTCAATTTTTTTCCTGTT TATTTTGTTCGTTTTTCCGGCACGCTCTCTCTCTCCCTTCCAGGATGCGC TGTACGACTACTTGAAGGAGCGCAACATCGACGACGACCTGGCCGCTTTC ATCTGCATGTACGCGGACCAAAAGGAACAGAACGAGTACACCAACTGGCT GGGGGAGGTGGCAAAGTTTGTCAAGTAGATTTTCAGATCTGTGTGTCGGT GGTGTTGTGGCGGTGAAGGTTAAAACGAGGGGTGCGGGCGTGCGGAAAAA GGGGGGCCGCCGGGTGCGACACGCTATGTATGTATGTATGTACGCTCAAA GTTTGGCAGACCCAGCGTCTTGGGAAACGAAGCGGCGCCCTTGGCCAACG CTTTAGGCCCACCGCCTTGGATCAAAGACGGAGACGAACACCTCGACGGT GACTGCCGTGGAACCCTGCATGCTTTACGAGGCGCCGCCGCAGCGTGTTT CGCGTGCGTGTATGTAGGTAGTCGACGGTACTGCTGCTGTGCATGCTCGC GCGCGCGTAGATACCATCGAGATAGACGTTGATATCGCGGATGCGGCAAG GAAAGCGCTATCGGCGTGTGCGGAAGAGAGATATCGTCAAGCAGGTGCAA GCAAAGGCACCTACCTGAGGGTCACAGGCGGGCGGTTCAACGGCGGTGTA GTAGTGCTTGGAACACGCGTAGATGCACGTGTAGATGGAAACGCACGTGG TACATACATAGATGCGAATGTATGTGGTATGGAGTAATGACCTTTTGATT TTTTCCGTGTAACCTGTTGAACTAAGGTCTACAGCCCCCCCCCCACCCCC CCCGCTCCCTCGTGTAAAACGACCTCTTCGTTACCACACAGAGTAGTAAG CTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1686:11971..16174-

>mRNA_L-elsbetiae_contig1686.4609.1 ID=mRNA_L-elsbetiae_contig1686.4609.1|Name=mRNA_L-elsbetiae_contig1686.4609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1572bp|location=Sequence derived from alignment at L-elsbetiae_contig1686:11971..16174- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGCTAACCTGGCTCGTGCTGCAGCACGGCCGTCGCTGGGGCTGGT
TCGAAGAGCTGCAGCGACGGCGAAGTGCCCAACTGCTACCGCTACTGCTG
TCTCCGTGCCCAGGAATCTGCGATGCGCGAGCACCCTGAGCGAGGTGTTG
AAAGCGGAGATTGAAGAGGAGCGTCTCGTGTCATTTGACGAAGATGTTGG
CTAACCTGGCTCGTGCTGCAGCACGGCCGTCGCTGGGGCTGGTTCGAAGA
GCTGCAGCGACGGCGAAGTGCCCAACTGCTACCGCTACTGCTGTCTCCGT
GCCCAGGAATCTGCGATGCGCGAGCACCCTGAGCGAGGTGTTGAAAGCGG
AGATTGAAGAGGAGCGTCTCGTGTCATTTGACGAAGACGTGGCGTCTATG
GTGAAGGAGCTCGGCAAGAAGGGCATCACAGTCAAGGACGAGCCGGGAGT
GTCGTTGGTGCGCCTCTTTGGACCCGGCGTTGGCGATGAGAAGACGTGGC
GTCTATGGTGAAGGAGCTCGGCAAGAAGGGCATCACAGTCAAGGACGAGC
CGGGAGTGTCGTTGGTGCGCCTCTTTGGACCCGGCGTTGGCGATGAGAAG
GTGACGGTGGAGTTCGACTGCGACGTCGAGGGCGATGGAGACGACGGCTG
GGAAGACGACCTTGACGACGACTCCGACTTGAGCTTGGCAGCGGCCGAGC
AGCAGCAGCAGCCGGCGGCGGCGGGGAACGGGGGGGAGGGCGAGGAACAG
GACGAGAGCGACGAGGACATGCTCGGCCCAGGTGACGGTGGAGTTCGACT
GCGACGTCGAGGGCGATGGAGACGACGGCTGGGAAGACGACCTTGACGAC
GACTCCGACTTGAGCTTGGCAGCGGCCGAGCAGCAGCAGCAGCCGGCGGC
GGCGGGGAACGGGGGGGAGGGCGAGGAACAGGACGAGAGCGACGAGGACA
TGCTCGGCCCAGGCTACCGCTTCACGGCGACAATCACAAAGGGGGCGAAG
AAGATGGTGTTGTCGGGATCGGCCAAGGACACCATCGCCGTGCATGGCAT
CCGCGTCAACCCGGCGAACGTGGAGTGGGACTCGTCTTTGTACAGAGGTC
CCGACTTCAACGAGCTCGACCCCGATTTGCAGGCTACCGCTTCACGGCGA
CAATCACAAAGGGGGCGAAGAAGATGGTGTTGTCGGGATCGGCCAAGGAC
ACCATCGCCGTGCATGGCATCCGCGTCAACCCGGCGAACGTGGAGTGGGA
CTCGTCTTTGTACAGAGGTCCCGACTTCAACGAGCTCGACCCCGATTTGC
AGGATGCGCTGTACGACTACTTGAAGGAGCGCAACATCGACGACGACCTG
GCCGCTTTCATCTGCATGTACGCGGACCAAAAGGAACAGAACGAGTACAC
CAACTGGCTGGGGGAGGTGGCAAAGTTTGTCAAGTAGGATGCGCTGTACG
ACTACTTGAAGGAGCGCAACATCGACGACGACCTGGCCGCTTTCATCTGC
ATGTACGCGGACCAAAAGGAACAGAACGAGTACACCAACTGGCTGGGGGA
GGTGGCAAAGTTTGTCAAGTAG
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