mRNA_L-elsbetiae_contig1686.4607.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1686.4607.1
Unique NamemRNA_L-elsbetiae_contig1686.4607.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1686.4607.1 vs. uniprot
Match: D7G1P6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P6_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 4.620e-66
Identity = 211/449 (46.99%), Postives = 255/449 (56.79%), Query Frame = 1 
Query:   64 MALPAQNTALEVLHALAFPDRVKNGLESLAAGGDDELSRRDELVASLSSDLDGPRQGQTLQGLCDML--GDHGSRAAVAQALDPVSWEVFGLVMGCLEK-----------STXXXXXXXXXXXXXXXXXXXXEIVAALAEKLALELAEIFNPKELHIMVLEHLHAYSKKRTVRTVLAVLRRSTQRMPPIRRAKFLEAALQPALTATKRAAXXXXXXVDAGNAPAD-----SRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETAMEFVGPLAEQAFAERAKLAHGPMEAAEAGRGGRYTSLGANASAGAKNSADSPVGCGEAVSASDLSLAAYLGFALSALELAAETSACMAASAXXXXXXXXXXXXXXSVAPSALPFEEKSAAVEALTKAEERLVGLVVGGPAAPFDLQFVLLHGCRLSHAERAKRRR 1356
            M +  + TA+  +  LAF  + + G+    +        R+ LV+SL  DL GPR   TLQGL DML  G+H  RAAV + LD VSWE FGLV+GCLE+           S                     +  AAL+E LAL +AEIF+PKELH+M LEHLHAY+K RTVR VL +LRRST+RM   RR+KFLEA+L+PAL A KR          AG+APA+           XXXXXXXXXXXXXXXXXXXXXXX                     AETA +F+GPL EQA AERA LA   +  A  G G    +  A    G+ ++  S  G  E VSASDLSLAAY+GFALSALELA ETS C     XXXXXX                 E+  AA E+L +AEERL+G+VV    +P DL+F LLHGCR+S+A   KRRR
Sbjct:    1 MDIAEEMTAMAAVGLLAFSPQDEEGIGLQCS--------REALVSSLERDLQGPRVRVTLQGLYDMLVDGEHSHRAAVGEVLDTVSWEAFGLVVGCLERFATSPSPNSSGSVTGTFEKSSDEAETLTTSRDADDCAALSEGLALAMAEIFSPKELHLMTLEHLHAYTKARTVRVVLTILRRSTERMATARRSKFLEASLRPALKAAKRVGLVAA----AGDAPAEPGLRQKSSGSDXXXXXXXXXXXXXXXXXXXXXXXLLPTADGDMPSSAAYDAAASAAETAADFIGPLMEQASAERALLAVSGLPTAGRGEGRPAAAAVAXXXGGSGHAVGS--GEKEGVSASDLSLAAYIGFALSALELAGETSVCXXXXXXXXXXXTGS--------------EDNPAAGESLARAEERLIGIVVD---SPLDLRFALLHGCRVSYASGVKRRR 418
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BLAST of mRNA_L-elsbetiae_contig1686.4607.1 vs. uniprot
Match: A0A6H5JSB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB3_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 5.230e-61
Identity = 201/445 (45.17%), Postives = 248/445 (55.73%), Query Frame = 1 
Query:   64 MALPAQNTALEVLHALAFPDRVKNGLESLAAGGDDELSRRDELVASLSSDLDGPRQGQTLQGLCDML--GDHGSRAAVAQALDPVSWEVFGLVMGCLEKSTXXXXXXXXXXXXXXXXXXXXEI-----------VAALAEKLALELAEIFNPKELHIMVLEHLHAYSKKRTVRTVLAVLRRSTQRMPPIRRAKFLEAALQPALTATKRAAXXXXXXVDAGNAPAD-SRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETAMEFVGPLAEQAFAERAKLAHGPMEAAEAGRGGRYTSLGANASAGAKNSADSPVGCGEAVSASDLSLAAYLGFALSALELAAETSACMAASAXXXXXXXXXXXXXXSVAPSALPFEEKSAAVEALTKAEERLVGLVVGGPAAPFDLQFVLLHGCRLSHAERAKRRR 1356
            M +  + TA+ V+  LA P + + G+    +        R++LV+SL  DL GPR   TLQGL DML  G+      V + LD VSWE FGLV+GCLE+                      E             AAL+E+LAL +AEIF+PKELH+M LEHLHAY+K RT+R VL +LRRSTQ+M   RR KFLEA+L+PAL ATKR          AG+APA+              XXXXXXXXXXXXXXXXX                    AETA +F+GPL EQA AE+A LA   +  A  G G    ++ A ++ G+  +  S  G  E VSASDLSLAAY+GFALSALELA ETS C     XXXXXXX                E+   A E+L +A+ERLVG+VV    +P DL+FVLLHG R+S A   KRRR
Sbjct:    1 MDIGEEMTAVAVVRLLASPAQDEEGIGQQCS--------REQLVSSLERDLQGPRVRATLQGLHDMLVDGEQNHSTPVGEVLDTVSWEAFGLVVGCLERFATSASSNNSDSITGTFEKSSDEAETLTTSRDADDCAALSERLALAMAEIFSPKELHLMALEHLHAYTKARTLRVVLTILRRSTQQMVTARRWKFLEASLRPALEATKRVGLVAA----AGDAPAEPGLPQKSSGSDADEXXXXXXXXXXXXXXXXXLPTADEDMPSRAAYDAAASAAETAADFIGPLMEQASAEQALLAVSRVPTAGRGEGRPAAAVVATSAGGSGRAVGS--GEKEGVSASDLSLAAYIGFALSALELAGETSVCCTXXXXXXXXXXGS--------------EDNPPARESLARAQERLVGIVVD---SPLDLRFVLLHGYRVSFASGVKRRR 414
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1686.4607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1P6_ECTSI4.620e-6646.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSB3_9PHAE5.230e-6145.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1686contigL-elsbetiae_contig1686:4726..6633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons3
Model size1358
Cds size1356
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1686.4607.1prot_L-elsbetiae_contig1686.4607.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1686 4727..6633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.6090455-CDS-L-elsbetiae_contig1686:4726..55491622815700.6090455-CDS-L-elsbetiae_contig1686:4726..5549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 4727..5549 -
1691683046.4528284-CDS-L-elsbetiae_contig1686:4726..55491691683046.4528284-CDS-L-elsbetiae_contig1686:4726..5549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 4727..5549 -
1622815700.6193142-CDS-L-elsbetiae_contig1686:5954..62221622815700.6193142-CDS-L-elsbetiae_contig1686:5954..6222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 5955..6222 -
1691683046.461352-CDS-L-elsbetiae_contig1686:5954..62221691683046.461352-CDS-L-elsbetiae_contig1686:5954..6222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 5955..6222 -
1622815700.6290977-CDS-L-elsbetiae_contig1686:6368..66331622815700.6290977-CDS-L-elsbetiae_contig1686:6368..6633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 6369..6633 -
1691683046.4688594-CDS-L-elsbetiae_contig1686:6368..66331691683046.4688594-CDS-L-elsbetiae_contig1686:6368..6633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1686 6369..6633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1686.4607.1

>prot_L-elsbetiae_contig1686.4607.1 ID=prot_L-elsbetiae_contig1686.4607.1|Name=mRNA_L-elsbetiae_contig1686.4607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=452bp
SACSAVLCCVWWLACTAPGYDMALPAQNTALEVLHALAFPDRVKNGLESL
AAGGDDELSRRDELVASLSSDLDGPRQGQTLQGLCDMLGDHGSRAAVAQA
LDPVSWEVFGLVMGCLEKSTTSSSSSRKSSNGSSNDDDDSEIVAALAEKL
ALELAEIFNPKELHIMVLEHLHAYSKKRTVRTVLAVLRRSTQRMPPIRRA
KFLEAALQPALTATKRAAAAEEEEVDAGNAPADSRHRQEYSSASDDDGND
GDGGSHEQGASPPPVAAEHEMASRAAFEAAAAAAETAMEFVGPLAEQAFA
ERAKLAHGPMEAAEAGRGGRYTSLGANASAGAKNSADSPVGCGEAVSASD
LSLAAYLGFALSALELAAETSACMAASAAFAASAASAETSAASVAPSALP
FEEKSAAVEALTKAEERLVGLVVGGPAAPFDLQFVLLHGCRLSHAERAKR
RR
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mRNA from alignment at L-elsbetiae_contig1686:4726..6633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1686.4607.1 ID=mRNA_L-elsbetiae_contig1686.4607.1|Name=mRNA_L-elsbetiae_contig1686.4607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1908bp|location=Sequence derived from alignment at L-elsbetiae_contig1686:4726..6633- (Laminarionema elsbetiae ELsaHSoW15)
TCTGCTTGTTCAGCTGTGCTCTGCTGCGTCTGGTGGCTGGCGTGCACAGC
ACCCGGTTATGATATGGCACTCCCCGCACAGAATACGGCATTGGAAGTGT
TGCATGCGCTGGCATTCCCGGATCGAGTCAAAAATGGTCTCGAATCGCTG
GCCGCCGGAGGCGATGATGAACTCTCGCGACGAGACGAGTTAGTGGCGTC
GCTCTCAAGCGATCTTGACGGCCCGCGCCAGGGCCAGACTCTACAAGGGC
TGTGTGATATGCTAGGTGGGCGATTGCGTACAACAGACGCATACTTCTGA
AGGATGGTGCGGAGGCAGGTGCTGTTCTTTTAGCGTTCACCCCGACCCTC
GCACACGATCCCTGGAAACCAGAACTAGTCTAAACATGTCCCTTGCGCGC
ACGCAATTCAGGTGACCACGGGAGCCGTGCGGCCGTCGCGCAAGCCCTGG
ACCCCGTCTCCTGGGAAGTCTTCGGTCTTGTGATGGGTTGCCTGGAGAAG
TCTACCACCTCCTCCTCCTCCTCGAGGAAAAGTAGCAACGGAAGCAGCAA
TGACGACGACGACAGCGAGATCGTCGCCGCCCTGGCCGAGAAGCTGGCCT
TGGAGCTGGCGGAGATTTTCAACCCGAAGGAGTTGCACATCATGGTGCTC
GAGCACCTGCACGCCTACAGCAAGAAAAGGCAAGGGCTGTTTGTTGCCTC
TCGCCTCTATCGTCCTTGTTTTCCGGCCTGTCGTTATTACCACGTGCAAT
ATCTTGAGTCGCGGGAAGTTTGTGATATTTAGGCGGTCGGTCCCTTGGAG
GTGGCCCGTCTTGTAACTTAACTTCCAAAGACAGCCTTATACAAGATGAG
GGGTTTCTCCGGCGCTTCACGTTGCATGGGAGACACTTCGAGCCCCCCGT
GCCGACCAAAGCGGCACACGGCAGTGCCCGAAAAATGGCCCGTTCTGCAT
TTCATCCTGAGCCGTTTTTGAACGCGACGAGAAAAAGACGCTTGTCGTAT
ATACCGCCGCCCCGCCGCCACCGCCGCCACCGCCGCCACCGCCGCCGCCG
CCGCCGCCGCTGCCGCCCCACGTCGCTGCACCAGGACAGTACGGACCGTC
CTGGCCGTTCTGCGTCGCAGCACGCAGCGAATGCCGCCTATCCGCAGGGC
CAAGTTTTTGGAGGCAGCCTTACAACCGGCGCTCACGGCCACGAAACGTG
CGGCAGCGGCGGAGGAGGAGGAGGTTGACGCTGGCAACGCTCCGGCCGAC
TCCCGACACCGCCAAGAGTACAGCAGCGCTTCTGATGACGATGGAAACGA
TGGCGATGGCGGTAGTCACGAGCAAGGGGCGTCGCCGCCGCCGGTGGCAG
CAGAGCACGAGATGGCCTCGCGAGCCGCGTTTGAGGCAGCGGCTGCCGCG
GCGGAGACCGCGATGGAGTTTGTGGGTCCTCTAGCGGAGCAGGCCTTCGC
GGAGAGGGCAAAACTTGCGCATGGACCGATGGAAGCAGCAGAAGCGGGCC
GCGGAGGACGGTATACATCGCTGGGGGCGAACGCCTCGGCGGGCGCGAAG
AATAGTGCTGACAGTCCCGTCGGGTGTGGAGAAGCGGTGTCGGCGTCCGA
TCTGTCGCTGGCGGCGTACTTAGGGTTCGCGCTGTCGGCGTTGGAGCTTG
CGGCAGAGACGTCGGCATGCATGGCTGCCTCTGCTGCCTTTGCTGCCTCT
GCTGCCTCTGCTGAGACTTCCGCCGCTTCAGTCGCTCCGTCAGCCCTGCC
CTTCGAGGAAAAGTCCGCGGCGGTGGAGGCGCTCACGAAAGCTGAGGAGC
GGTTGGTGGGGCTCGTCGTGGGCGGCCCCGCCGCCCCCTTCGATCTGCAG
TTTGTTCTGCTTCATGGCTGCCGGCTGTCGCACGCAGAGCGCGCCAAGCG
CAGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1686:4726..6633-

>mRNA_L-elsbetiae_contig1686.4607.1 ID=mRNA_L-elsbetiae_contig1686.4607.1|Name=mRNA_L-elsbetiae_contig1686.4607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2712bp|location=Sequence derived from alignment at L-elsbetiae_contig1686:4726..6633- (Laminarionema elsbetiae ELsaHSoW15)
TCTGCTTGTTCAGCTGTGCTCTGCTGCGTCTGGTGGCTGGCGTGCACAGC
ACCCGGTTATGATATGGCACTCCCCGCACAGAATACGGCATTGGAAGTGT
TGCATGCGCTGGCATTCCCGGATCGAGTCAAAAATGGTCTCGAATCGCTG
GCCGCCGGAGGCGATGATGAACTCTCGCGACGAGACGAGTTAGTGGCGTC
GCTCTCAAGCGATCTTGACGGCCCGCGCCAGGGCCAGACTCTACAAGGGC
TGTGTGATATGCTAGTCTGCTTGTTCAGCTGTGCTCTGCTGCGTCTGGTG
GCTGGCGTGCACAGCACCCGGTTATGATATGGCACTCCCCGCACAGAATA
CGGCATTGGAAGTGTTGCATGCGCTGGCATTCCCGGATCGAGTCAAAAAT
GGTCTCGAATCGCTGGCCGCCGGAGGCGATGATGAACTCTCGCGACGAGA
CGAGTTAGTGGCGTCGCTCTCAAGCGATCTTGACGGCCCGCGCCAGGGCC
AGACTCTACAAGGGCTGTGTGATATGCTAGGTGACCACGGGAGCCGTGCG
GCCGTCGCGCAAGCCCTGGACCCCGTCTCCTGGGAAGTCTTCGGTCTTGT
GATGGGTTGCCTGGAGAAGTCTACCACCTCCTCCTCCTCCTCGAGGAAAA
GTAGCAACGGAAGCAGCAATGACGACGACGACAGCGAGATCGTCGCCGCC
CTGGCCGAGAAGCTGGCCTTGGAGCTGGCGGAGATTTTCAACCCGAAGGA
GTTGCACATCATGGTGCTCGAGCACCTGCACGCCTACAGCAAGAAAAGGT
GACCACGGGAGCCGTGCGGCCGTCGCGCAAGCCCTGGACCCCGTCTCCTG
GGAAGTCTTCGGTCTTGTGATGGGTTGCCTGGAGAAGTCTACCACCTCCT
CCTCCTCCTCGAGGAAAAGTAGCAACGGAAGCAGCAATGACGACGACGAC
AGCGAGATCGTCGCCGCCCTGGCCGAGAAGCTGGCCTTGGAGCTGGCGGA
GATTTTCAACCCGAAGGAGTTGCACATCATGGTGCTCGAGCACCTGCACG
CCTACAGCAAGAAAAGGACAGTACGGACCGTCCTGGCCGTTCTGCGTCGC
AGCACGCAGCGAATGCCGCCTATCCGCAGGGCCAAGTTTTTGGAGGCAGC
CTTACAACCGGCGCTCACGGCCACGAAACGTGCGGCAGCGGCGGAGGAGG
AGGAGGTTGACGCTGGCAACGCTCCGGCCGACTCCCGACACCGCCAAGAG
TACAGCAGCGCTTCTGATGACGATGGAAACGATGGCGATGGCGGTAGTCA
CGAGCAAGGGGCGTCGCCGCCGCCGGTGGCAGCAGAGCACGAGATGGCCT
CGCGAGCCGCGTTTGAGGCAGCGGCTGCCGCGGCGGAGACCGCGATGGAG
TTTGTGGGTCCTCTAGCGGAGCAGGCCTTCGCGGAGAGGGCAAAACTTGC
GCATGGACCGATGGAAGCAGCAGAAGCGGGCCGCGGAGGACGGTATACAT
CGCTGGGGGCGAACGCCTCGGCGGGCGCGAAGAATAGTGCTGACAGTCCC
GTCGGGTGTGGAGAAGCGGTGTCGGCGTCCGATCTGTCGCTGGCGGCGTA
CTTAGGGTTCGCGCTGTCGGCGTTGGAGCTTGCGGCAGAGACGTCGGCAT
GCATGGCTGCCTCTGCTGCCTTTGCTGCCTCTGCTGCCTCTGCTGAGACT
TCCGCCGCTTCAGTCGCTCCGTCAGCCCTGCCCTTCGAGGAAAAGTCCGC
GGCGGTGGAGGCGCTCACGAAAGCTGAGGAGCGGTTGGTGGGGCTCGTCG
TGGGCGGCCCCGCCGCCCCCTTCGATCTGCAGTTTGTTCTGCTTCATGGC
TGCCGGCTGTCGCACGCAGAGCGCGCCAAGCGCAGGAGGGACAGTACGGA
CCGTCCTGGCCGTTCTGCGTCGCAGCACGCAGCGAATGCCGCCTATCCGC
AGGGCCAAGTTTTTGGAGGCAGCCTTACAACCGGCGCTCACGGCCACGAA
ACGTGCGGCAGCGGCGGAGGAGGAGGAGGTTGACGCTGGCAACGCTCCGG
CCGACTCCCGACACCGCCAAGAGTACAGCAGCGCTTCTGATGACGATGGA
AACGATGGCGATGGCGGTAGTCACGAGCAAGGGGCGTCGCCGCCGCCGGT
GGCAGCAGAGCACGAGATGGCCTCGCGAGCCGCGTTTGAGGCAGCGGCTG
CCGCGGCGGAGACCGCGATGGAGTTTGTGGGTCCTCTAGCGGAGCAGGCC
TTCGCGGAGAGGGCAAAACTTGCGCATGGACCGATGGAAGCAGCAGAAGC
GGGCCGCGGAGGACGGTATACATCGCTGGGGGCGAACGCCTCGGCGGGCG
CGAAGAATAGTGCTGACAGTCCCGTCGGGTGTGGAGAAGCGGTGTCGGCG
TCCGATCTGTCGCTGGCGGCGTACTTAGGGTTCGCGCTGTCGGCGTTGGA
GCTTGCGGCAGAGACGTCGGCATGCATGGCTGCCTCTGCTGCCTTTGCTG
CCTCTGCTGCCTCTGCTGAGACTTCCGCCGCTTCAGTCGCTCCGTCAGCC
CTGCCCTTCGAGGAAAAGTCCGCGGCGGTGGAGGCGCTCACGAAAGCTGA
GGAGCGGTTGGTGGGGCTCGTCGTGGGCGGCCCCGCCGCCCCCTTCGATC
TGCAGTTTGTTCTGCTTCATGGCTGCCGGCTGTCGCACGCAGAGCGCGCC
AAGCGCAGGAGG
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