mRNA_L-elsbetiae_contig16858.4606.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16858.4606.1
Unique NamemRNA_L-elsbetiae_contig16858.4606.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16858.4606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16858contigL-elsbetiae_contig16858:2833..3440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size608
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16858.4606.1prot_L-elsbetiae_contig16858.4606.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16858 3039..3362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.5418532-UTR-L-elsbetiae_contig16858:2832..30381622815700.5418532-UTR-L-elsbetiae_contig16858:2832..3038Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16858 2833..3038 +
1691683046.4270906-UTR-L-elsbetiae_contig16858:2832..30381691683046.4270906-UTR-L-elsbetiae_contig16858:2832..3038Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16858 2833..3038 +
1622815700.5693097-UTR-L-elsbetiae_contig16858:3362..34401622815700.5693097-UTR-L-elsbetiae_contig16858:3362..3440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16858 3363..3440 +
1691683046.4445944-UTR-L-elsbetiae_contig16858:3362..34401691683046.4445944-UTR-L-elsbetiae_contig16858:3362..3440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16858 3363..3440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.555263-CDS-L-elsbetiae_contig16858:3038..33621622815700.555263-CDS-L-elsbetiae_contig16858:3038..3362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16858 3039..3362 +
1691683046.4366322-CDS-L-elsbetiae_contig16858:3038..33621691683046.4366322-CDS-L-elsbetiae_contig16858:3038..3362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16858 3039..3362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16858.4606.1

>prot_L-elsbetiae_contig16858.4606.1 ID=prot_L-elsbetiae_contig16858.4606.1|Name=mRNA_L-elsbetiae_contig16858.4606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MPAFHSPYVSLRPQWKILVHEQPQAMASNYKKNKIAALHVDTCRFETPEL
GTTPNNNSRTQNHHLRYAVHAYVRPTRGGTTQYTRILYKKKTHQKRETAR
ESTTQDD*
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mRNA from alignment at L-elsbetiae_contig16858:2833..3440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16858.4606.1 ID=mRNA_L-elsbetiae_contig16858.4606.1|Name=mRNA_L-elsbetiae_contig16858.4606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=608bp|location=Sequence derived from alignment at L-elsbetiae_contig16858:2833..3440+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCGGTGTGGTACTAGCTAGATACAGAATGCTTTGCTTGCGTACGCGC
CAAGGTTCCAAGCCCCAGGTGCGTTTCTTTCGCCCTATCATATTGATGCC
AGAATGCTTTGCTTGCGTACGCGCCGAGGTTCCAAGCCCCAGGTGCGTCT
CTTCCGCCCTAGCATATTGATGCAACAACAAACAATAAAATAACAGAACA
TGTCGGATGCCGGCATTTCACAGCCCCTACGTCTCTCTTCGCCCGCAATG
GAAAATACTCGTTCACGAACAACCCCAAGCCATGGCATCAAACTACAAAA
AAAACAAAATAGCAGCCTTACACGTGGACACGTGCAGATTTGAAACCCCA
GAGCTGGGGACAACGCCCAACAACAACTCACGCACGCAAAACCACCATCT
GCGCTACGCGGTACATGCGTATGTAAGACCTACGAGAGGCGGTACAACGC
AGTACACACGCATTCTCTATAAGAAAAAGACACACCAAAAAAGAGAAACA
GCGAGGGAATCAACCACCCAAGACGACTAAACCGAAAGAACACCCTTGCC
TATTGTATCATACCTCCCATCCTCCAAACGATCCGTATCTACCTGGCGTT
TGCATTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16858:2833..3440+

>mRNA_L-elsbetiae_contig16858.4606.1 ID=mRNA_L-elsbetiae_contig16858.4606.1|Name=mRNA_L-elsbetiae_contig16858.4606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig16858:2833..3440+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCATTTCACAGCCCCTACGTCTCTCTTCGCCCGCAATGGAAAAT
ACTCGTTCACGAACAACCCCAAGCCATGGCATCAAACTACAAAAAAAACA
AAATAGCAGCCTTACACGTGGACACGTGCAGATTTGAAACCCCAGAGCTG
GGGACAACGCCCAACAACAACTCACGCACGCAAAACCACCATCTGCGCTA
CGCGGTACATGCGTATGTAAGACCTACGAGAGGCGGTACAACGCAGTACA
CACGCATTCTCTATAAGAAAAAGACACACCAAAAAAGAGAAACAGCGAGG
GAATCAACCACCCAAGACGACTAAATGCCGGCATTTCACAGCCCCTACGT
CTCTCTTCGCCCGCAATGGAAAATACTCGTTCACGAACAACCCCAAGCCA
TGGCATCAAACTACAAAAAAAACAAAATAGCAGCCTTACACGTGGACACG
TGCAGATTTGAAACCCCAGAGCTGGGGACAACGCCCAACAACAACTCACG
CACGCAAAACCACCATCTGCGCTACGCGGTACATGCGTATGTAAGACCTA
CGAGAGGCGGTACAACGCAGTACACACGCATTCTCTATAAGAAAAAGACA
CACCAAAAAAGAGAAACAGCGAGGGAATCAACCACCCAAGACGACTAA
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