mRNA_L-elsbetiae_contig16857.4605.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16857.4605.1
Unique NamemRNA_L-elsbetiae_contig16857.4605.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.890e-21
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 QSCALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVYQY 186
            + C  EC G  +FG QYG EC+CGG+ TD +QHGES  CD+EC GD+ Q+CGG+++M+VY Y
Sbjct:  217 EMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSY 278          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: D8LF45_ECTSI (Beta-xylosidase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF45_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-19
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 QSCALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVY 180
            ++C   CEGYAF+G QYG +C+CG  + D  +HGES+ C   C GD   ICGG W+MNVY
Sbjct:   28 ETCKAACEGYAFYGLQYGKQCFCGASDEDFTRHGESQECLLRCTGDRKSICGGVWAMNVY 87          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: D7G4P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 6.700e-16
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    7 CALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVYQ 183
            C+  C  Y ++GTQY  ECWCG  ET +  +G SE C   CAGDAS+ICGG +SM+VYQ
Sbjct:  101 CSGHCSAYPYYGTQYSTECWCGDGETAYDTNGASEECVMPCAGDASEICGGPYSMSVYQ 159          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 8.250e-16
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 QSCALECEGYAFFGTQYGMECWCGG----DETDHVQHGESELCDFECAGDASQICGGYWSMNVYQY 186
            + CA  CEG  FFG QYG ECWCG     D+ D  +HG S  C++ CAGD  Q CGGYW++++Y+Y
Sbjct:  416 EMCATYCEGDDFFGMQYGSECWCGSTDEKDDEDLFRHG-STTCEYPCAGDEEQTCGGYWAISLYEY 480          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.690e-15
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 CALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVYQ 183
            C+  C  Y ++GTQY +ECWCG +  D+  +G S  C   CAGDAS+ CGG +SM+VYQ
Sbjct:   41 CSDHCSAYPYYGTQYSVECWCGDENADYDANGASNECVMPCAGDASETCGGSYSMSVYQ 99          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: A0A6H5KTL8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.260e-15
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 CALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVYQ 183
            C+  C  Y ++GTQY  ECWCG +  D+  +G S  C   CAGDAS++CGG +SM+VYQ
Sbjct:   96 CSDHCSAYPYYGTQYSTECWCGDENADYGANGASNECVVPCAGDASEMCGGSYSMSVYQ 154          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 7.410e-15
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 QSCALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVY 180
            +SC   C GYA++G QYG +C+CG  + D+  +GES+ C   C GDAS  CGG W+M+VY
Sbjct:  181 ESCKASCVGYAYYGLQYGEQCFCGTADEDYTVYGESDNCVLSCTGDASSTCGGSWAMDVY 240          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.520e-14
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 QSCALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVY 180
            Q+C   C GYA+FG QYG +C+CG  + D+  +GES+ C + C GD+   CGG W+M+++
Sbjct:    4 QTCKATCVGYAYFGLQYGKQCFCGTADEDYTVYGESDDCTYSCTGDSESTCGGRWAMDIF 63          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: D7G4N8_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-13
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    7 CALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVYQ 183
            CA  C G A++GTQY  ECWCG D  D+  +G S +CD  C+G++ ++CGG ++M+VYQ
Sbjct:    6 CATLCTGSAYYGTQYSQECWCG-DNVDYDANGFS-VCDMPCSGNSDEMCGGAYTMSVYQ 62          
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-13
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 QSCALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQICGGYWSMNVY 180
            Q CA  C  YA++GTQYG ECWCG    D +  GES  C F C+GDA + CGG+ +M+VY
Sbjct:    2 QFCADFCAEYAYYGTQYGEECWCGNSGYDTL--GESTDCSFGCSGDAGETCGGFNAMSVY 59          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16857.4605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEL0_ECTSI2.890e-2156.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LF45_ECTSI2.170e-1953.33Beta-xylosidase, putative n=1 Tax=Ectocarpus silic... [more]
D7G4P0_ECTSI6.700e-1655.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDH2_ECTSI8.250e-1651.52WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL84_9PHAE3.690e-1550.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL8_9PHAE4.260e-1550.85WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLI8_ECTSI7.410e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLI7_ECTSI3.520e-1445.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4N8_ECTSI1.040e-1349.15WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K223_9PHAE1.490e-1353.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16857contigL-elsbetiae_contig16857:2640..2825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D8LEL0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.5065484-CDS-L-elsbetiae_contig16857:2639..28251622815700.5065484-CDS-L-elsbetiae_contig16857:2639..2825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16857 2640..2825 -
1691683046.4171448-CDS-L-elsbetiae_contig16857:2639..28251691683046.4171448-CDS-L-elsbetiae_contig16857:2639..2825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16857 2640..2825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16857.4605.1prot_L-elsbetiae_contig16857.4605.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16857 2640..2825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16857.4605.1

>prot_L-elsbetiae_contig16857.4605.1 ID=prot_L-elsbetiae_contig16857.4605.1|Name=mRNA_L-elsbetiae_contig16857.4605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
QSCALECEGYAFFGTQYGMECWCGGDETDHVQHGESELCDFECAGDASQI
CGGYWSMNVYQY
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mRNA from alignment at L-elsbetiae_contig16857:2640..2825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16857.4605.1 ID=mRNA_L-elsbetiae_contig16857.4605.1|Name=mRNA_L-elsbetiae_contig16857.4605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig16857:2640..2825- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGCTGTGCCCTTGAGTGCGAGGGCTATGCGTTCTTCGGCACGCAGTA CGGCATGGAGTGCTGGTGCGGCGGCGACGAGACGGACCACGTCCAGCACG GCGAGAGCGAGCTCTGCGACTTCGAGTGCGCGGGCGACGCCTCCCAGATC TGCGGCGGCTACTGGTCGATGAACGTCTACCAGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16857:2640..2825-

>mRNA_L-elsbetiae_contig16857.4605.1 ID=mRNA_L-elsbetiae_contig16857.4605.1|Name=mRNA_L-elsbetiae_contig16857.4605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig16857:2640..2825- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGCTGTGCCCTTGAGTGCGAGGGCTATGCGTTCTTCGGCACGCAGTA
CGGCATGGAGTGCTGGTGCGGCGGCGACGAGACGGACCACGTCCAGCACG
GCGAGAGCGAGCTCTGCGACTTCGAGTGCGCGGGCGACGCCTCCCAGATC
TGCGGCGGCTACTGGTCGATGAACGTCTACCAGTACCAGAGCTGTGCCCT
TGAGTGCGAGGGCTATGCGTTCTTCGGCACGCAGTACGGCATGGAGTGCT
GGTGCGGCGGCGACGAGACGGACCACGTCCAGCACGGCGAGAGCGAGCTC
TGCGACTTCGAGTGCGCGGGCGACGCCTCCCAGATCTGCGGCGGCTACTG
GTCGATGAACGTCTACCAGTAC
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