mRNA_L-elsbetiae_contig16846.4596.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16846.4596.1
Unique NamemRNA_L-elsbetiae_contig16846.4596.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16846.4596.1 vs. uniprot
Match: D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 4.930e-101
Identity = 154/176 (87.50%), Postives = 162/176 (92.05%), Query Frame = 1 
Query:    1 AYRRVLGAIGVVHFPSCEGGHADFKELEKQFNKVVAGYKHVSASATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEDGGSTTELHMAVSLYDVAVSIIKSLAADVKTWSASTSP-TAAGRAVAALRGINSSSPPLTSWYESEEGLSDSKNAKRRAGRLHKWIGDTCLLVGSPK 525
            AYRRVLGAIGVVHFPSCEGG ADFKELEKQFN+VVAGYKHV A  TRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFE GGSTTELHMAVSLYDVAVSIIK+LAAD+KTW +S SP +AAGRAVA LRG N ++PPLTSWYE EE LSDSKNAKRR GRLHKWIGDTCLL+GSPK
Sbjct:   96 AYRRVLGAIGVVHFPSCEGGRADFKELEKQFNQVVAGYKHVHA--TRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKTWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPK 269
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BLAST of mRNA_L-elsbetiae_contig16846.4596.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 8.640e-95
Identity = 155/176 (88.07%), Postives = 163/176 (92.61%), Query Frame = 1 
Query:    1 AYRRVLGAIGVVHFPSCEGGHADFKELEKQFNKVVAGYKHVSASATRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEDGGSTTELHMAVSLYDVAVSIIKSLAADVKTWSASTSP-TAAGRAVAALRGINSSSPPLTSWYESEEGLSDSKNAKRRAGRLHKWIGDTCLLVGSPK 525
            AYRRVLGAIGVVHFPSCEGGHADFKELEKQFN+VVAGYKHV A  TRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFE GGSTTELHMAVSLYDVAVSIIK+LAAD+KTW +S SP +AAGRAVA LRG N ++PPLTSWYE EE LSDSKNAKRR GRLHKWIGDTCLL+GSPK
Sbjct:   96 AYRRVLGAIGVVHFPSCEGGHADFKELEKQFNQVVAGYKHVHA--TRMFAFGHSFEQGDYPDILDPQRDIVFPPEQEFEGGGSTTELHMAVSLYDVAVSIIKNLAADIKTWRSSASPPSAAGRAVAVLRGNNDAAPPLTSWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPK 269
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16846.4596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF8_ECTSI4.930e-10187.50OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5J9H9_9PHAE8.640e-9588.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16846contigL-elsbetiae_contig16846:114..2696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue8.8e-82
Seed eggNOG ortholog2880.D8LGF8
Preferred nameTRAPPC9
KEGG koko:K20306
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0000916,GO:0000919,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005801,GO:0005802,GO:0005829,GO:0005886,GO:0006355,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006893,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007107,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030008,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030427,GO:0030865,GO:0030866,GO:0030900,GO:0031032,GO:0031267,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032153,GO:0032154,GO:0032155,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032991,GO:0033036,GO:0033206,GO:0034498,GO:0034613,GO:0035838,GO:0036063,GO:0036213,GO:0042147,GO:0042886,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048137,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051286,GO:0051301,GO:0051321,GO:0051336,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0060255,GO:0060322,GO:0061024,GO:0061640,GO:0061796,GO:0061982,GO:0061983,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0097708,GO:0098590,GO:0098772,GO:0098791,GO:0098876,GO:0099023,GO:0140013,GO:1902410,GO:1903046,GO:1903047,GO:1903506,GO:1990071,GO:2000112,GO:2001141
EggNOG free text desc.cell plate assembly
EggNOG OGsKOG1953@1,KOG1953@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-16_003880.1
Exons3
Model size525
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16846.4596.1prot_L-elsbetiae_contig16846.4596.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16846 114..2696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.723237-CDS-L-elsbetiae_contig16846:113..3501622815699.723237-CDS-L-elsbetiae_contig16846:113..350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16846 114..350 +
1691683046.0007825-CDS-L-elsbetiae_contig16846:113..3501691683046.0007825-CDS-L-elsbetiae_contig16846:113..350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16846 114..350 +
1622815699.735036-CDS-L-elsbetiae_contig16846:843..10191622815699.735036-CDS-L-elsbetiae_contig16846:843..1019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16846 844..1019 +
1691683046.018944-CDS-L-elsbetiae_contig16846:843..10191691683046.018944-CDS-L-elsbetiae_contig16846:843..1019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16846 844..1019 +
1622815699.7460647-CDS-L-elsbetiae_contig16846:2584..26961622815699.7460647-CDS-L-elsbetiae_contig16846:2584..2696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16846 2585..2696 +
1691683046.031238-CDS-L-elsbetiae_contig16846:2584..26961691683046.031238-CDS-L-elsbetiae_contig16846:2584..2696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16846 2585..2696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16846.4596.1

>prot_L-elsbetiae_contig16846.4596.1 ID=prot_L-elsbetiae_contig16846.4596.1|Name=mRNA_L-elsbetiae_contig16846.4596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
AYRRVLGAIGVVHFPSCEGGHADFKELEKQFNKVVAGYKHVSASATRMFA
FGHSFEQGDYPDILDPQRDIVFPPEQEFEDGGSTTELHMAVSLYDVAVSI
IKSLAADVKTWSASTSPTAAGRAVAALRGINSSSPPLTSWYESEEGLSDS
KNAKRRAGRLHKWIGDTCLLVGSPK
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mRNA from alignment at L-elsbetiae_contig16846:114..2696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16846.4596.1 ID=mRNA_L-elsbetiae_contig16846.4596.1|Name=mRNA_L-elsbetiae_contig16846.4596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2583bp|location=Sequence derived from alignment at L-elsbetiae_contig16846:114..2696+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTACCGGCGGGTCCTGGGAGCGATCGGGGTGGTGCACTTCCCCTCCTG
CGAGGGGGGCCACGCGGACTTCAAGGAGCTGGAGAAGCAGTTCAACAAGG
TGGTGGCCGGCTACAAGCACGTGAGCGCGAGCGCGACGCGGATGTTCGCC
TTCGGCCACTCGTTCGAGCAGGGCGACTACCCGGACATCTTGGACCCTCA
GAGGGACATCGTCTTCCCGCCAGAGCAAGAGTTCGAGGTATATATATGTA
TGTAGTATGTATGTGTGCATGTACGATACGTGCTTGTGCTTTTTCAAAAA
CAAACAAAGAATCAAAGATGGAACCTGACCCACACTAGAGCAAAGACTCG
GTGTGGGGTTCAAACGGCTTTTTTATGGTACATATCGGTCGGGTCGGGTC
GCGACCGATAGGCCGCGACGTGGTGCCCCGTTTGGTGGAGTCATGTGTTT
AGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGCTGTTTA
TTTCTGCGGAAGGGAGGTTTATTTCTGCGGAAGGGAGGTTAGTTTCATGC
GCGTGCGGCACCGCGCCTTTGCTTTGTGGCCGTGTGGATGGACATGTGTA
GGATGAGGCCGGTACGCTTTTAAATGTGACAACAGCAGCAGCAGCAGCAG
CAACACATCATGTGTAGCATGAGTCCGGTACGCTTTTAAATGTGACAACA
ACAACAACAACAACAAACAAACAAAACCAGGACGGAGGAAGCACGACGGA
GCTGCACATGGCCGTGAGCCTCTATGACGTGGCGGTTTCCATCATCAAGA
GCCTGGCCGCCGACGTCAAGACGTGGAGCGCGTCGACCTCTCCCACCGCG
GCGGGCAGGGCGGTAGCCGCGCTCCGGGGCATCAATTCCTCCTCGCCGCC
GCTCACGTGAGTCGAGTGAAGTGATGTTTTGACTTGAAACGTAATCAAGA
AAAGACGCAATTCTATATATTTATGTGGCAACGAAACAAACATACGTACA
TTACATGCAGAGACTATCGTACCTACATGTGTTGGTTTTATTTTTTTTAT
TTGGTTCTTCGTATTTTTGAAAGTGTTTTTCTCGCAAGCTGAGTCGAGAG
AGAGAGAGAGAGAGAGAGGAACCTGCCTCCCTACAGCGCACTCTGTGCTG
CGCCTGGTTTATCTCTCTTAGTCGCGTTAGGGTTGATGTTGTCGTTGGTT
GTTAAGACGTTCCATTGTTTGTTGCTGGTTGTTGGTCGTTCCGTTGTTGC
TGTTGTTGTTGCTGTTGCTGTTGCTGCTGCTGACAGTTCTGTTGACAGTC
CCGTTGACAGTCCCGTTGTTGTTGCTGTTGCTGGTGTTGCTGGTGGGAGA
GCGCACCTGGTTGGGGGCGGGGAGATGCTGCTCAATTGCAGTGGTGACAG
TCCCGTTTTGACAGCAGTCCTGAAGATTGGCGCAGGGTAGCTTGGGACGA
GAGTGCCCATGCAGGTCGAGCTCACAGAACCGGCCGAGATCACTCGAAGT
TGGTTGTGCGATGCGACTTCCTCCCGAAACGTTTTTGCGGCACGCGCTTT
AGACCGCACCTGGGGGCAGGGGGCGGGGAAATCGTACTGAATACGTCTAC
AGCAGTGTTGACAGTCCCGTTTTGACAGTCCCGAAGAGTGGCACAAAAGC
AGCTTGGGATGAGAGTATCCATGCAGCTCGGACTCATGCATATAATCAAC
GGCCGCTAGAATCCTGCGCTGCCGCAGGTCCCGCAGGTCACTTTTTAAAC
CCGGGTGCGATGCGGCTTAATCCCCGAGACGTGTGTATTTTTGTACGGCA
CGCGCTTTTGTAAACGCAAGGAAAAACATACTCCGTATTGTATGTACTAA
TAAGTTGCTTCTGCGCAGCGGGGAAGGCAGGTCATATGGTGCGAGCCAGA
TACGGCGTGGTTTGTTTGTGCGGGAAAGCTAAAGCTAACTGGTTTTGCAC
GTGCGCGCAAAAAAAAAAAAAAAGATGGCTTCCTTATTAATAAAAACTAA
ATATTGCTTCTAAAGGGGCACTCGGGAGCCAGAAAAAAAGAGAAATAGCG
NNNNNNNNNNCAGAGGGGGGGAGGCGGATACGGGGTGGTTTGTTTGGGAG
GAAAAGCCAAAGCAAACGGGTTTTACACGGGAACAAAAAAAAAAAAAAAA
AAAGTTGGCTTCCTTATTAATAAAATCTTAATAGGGCTTCTAAATGGTAA
TTCACGAGCCAGATGAATACGGCAATAACTTTTTACCGGAAAACAAAAAA
CTGCTTTTTGCAGGCGCGCGCGCGCGCGTTGATAACAAAAAGGTGCAGCG
GGTATAAAATGGTGCGAGCTACAATAGATGTCATGGCTGGCATACATAGA
AGTATTTAGGGTGTTTTGCGCGAAAACCAAAACTAATTCTGCGCGCACGC
GTTGCAAAAAAAAAAAAAAACAGGTTTCATATTATTTAATCAACTGTTTT
TCTTAAAAAAAAAAAAATCAGGTCGTGGTACGAGTCGGAGGAAGGGCTCA
GCGACAGCAAGAACGCCAAGCGAAGAGCCGGGCGCCTGCACAAGTGGATC
GGAGACACCTGCCTTCTTGTGGGCTCTCCCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16846:114..2696+

>mRNA_L-elsbetiae_contig16846.4596.1 ID=mRNA_L-elsbetiae_contig16846.4596.1|Name=mRNA_L-elsbetiae_contig16846.4596.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig16846:114..2696+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTACCGGCGGGTCCTGGGAGCGATCGGGGTGGTGCACTTCCCCTCCTG
CGAGGGGGGCCACGCGGACTTCAAGGAGCTGGAGAAGCAGTTCAACAAGG
TGGTGGCCGGCTACAAGCACGTGAGCGCGAGCGCGACGCGGATGTTCGCC
TTCGGCCACTCGTTCGAGCAGGGCGACTACCCGGACATCTTGGACCCTCA
GAGGGACATCGTCTTCCCGCCAGAGCAAGAGTTCGAGGCCTACCGGCGGG
TCCTGGGAGCGATCGGGGTGGTGCACTTCCCCTCCTGCGAGGGGGGCCAC
GCGGACTTCAAGGAGCTGGAGAAGCAGTTCAACAAGGTGGTGGCCGGCTA
CAAGCACGTGAGCGCGAGCGCGACGCGGATGTTCGCCTTCGGCCACTCGT
TCGAGCAGGGCGACTACCCGGACATCTTGGACCCTCAGAGGGACATCGTC
TTCCCGCCAGAGCAAGAGTTCGAGGACGGAGGAAGCACGACGGAGCTGCA
CATGGCCGTGAGCCTCTATGACGTGGCGGTTTCCATCATCAAGAGCCTGG
CCGCCGACGTCAAGACGTGGAGCGCGTCGACCTCTCCCACCGCGGCGGGC
AGGGCGGTAGCCGCGCTCCGGGGCATCAATTCCTCCTCGCCGCCGCTCAC
GACGGAGGAAGCACGACGGAGCTGCACATGGCCGTGAGCCTCTATGACGT
GGCGGTTTCCATCATCAAGAGCCTGGCCGCCGACGTCAAGACGTGGAGCG
CGTCGACCTCTCCCACCGCGGCGGGCAGGGCGGTAGCCGCGCTCCGGGGC
ATCAATTCCTCCTCGCCGCCGCTCACGTCGTGGTACGAGTCGGAGGAAGG
GCTCAGCGACAGCAAGAACGCCAAGCGAAGAGCCGGGCGCCTGCACAAGT
GGATCGGAGACACCTGCCTTCTTGTGGGCTCTCCCAAGGTCGTGGTACGA
GTCGGAGGAAGGGCTCAGCGACAGCAAGAACGCCAAGCGAAGAGCCGGGC
GCCTGCACAAGTGGATCGGAGACACCTGCCTTCTTGTGGGCTCTCCCAAG
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