mRNA_L-elsbetiae_contig16842.4594.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16842.4594.1
Unique NamemRNA_L-elsbetiae_contig16842.4594.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16842.4594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16842contigL-elsbetiae_contig16842:3..936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.642606-CDS-L-elsbetiae_contig16842:2..1331622815699.642606-CDS-L-elsbetiae_contig16842:2..133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16842 3..133 +
1691683045.9642737-CDS-L-elsbetiae_contig16842:2..1331691683045.9642737-CDS-L-elsbetiae_contig16842:2..133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16842 3..133 +
1622815699.656243-CDS-L-elsbetiae_contig16842:854..9361622815699.656243-CDS-L-elsbetiae_contig16842:854..936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16842 855..936 +
1691683045.9728537-CDS-L-elsbetiae_contig16842:854..9361691683045.9728537-CDS-L-elsbetiae_contig16842:854..936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16842 855..936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16842.4594.1prot_L-elsbetiae_contig16842.4594.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16842 3..936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16842.4594.1

>prot_L-elsbetiae_contig16842.4594.1 ID=prot_L-elsbetiae_contig16842.4594.1|Name=mRNA_L-elsbetiae_contig16842.4594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
SARDQPTSTEVDFSAEIFRLLLHFSVLVLMCHQKPHARRRHYTGNNHKLQ
PMAWGHTHGLCRRPKTRAFCA
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mRNA from alignment at L-elsbetiae_contig16842:3..936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16842.4594.1 ID=mRNA_L-elsbetiae_contig16842.4594.1|Name=mRNA_L-elsbetiae_contig16842.4594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=934bp|location=Sequence derived from alignment at L-elsbetiae_contig16842:3..936+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGCGCGCGACCAGCCAACGTCGACTGAAGTTGATTTCAGTGCGGAAAT
TTTTCGACTCTTGTTGCATTTTTCCGTCCTTGTGTTGATGTGTCACCAAA
AACCGCATGCCCGACGGAGGCATTACACCGGGTTTTATGGGAGCGGAAAG
TTGAGAGAAAAGTAAAAGTTTCTATACTTTTCTCTCGAACTTTCTCATGT
ACGCTCTTTATGGGAGCAAAAAGTTGCGATAAAAGTTGCGAAACTTTTGG
TTTGTGAAACTTTTGCCCGGTCGCGGGCAAAAGTTTGCAAACTTTTGACG
AGCAAATGTGGCGAAGAAAAGTTGAGCGGCGGGACTTCAGCCAATCCACG
CCAAGCGCCTACTCCACCACACAACTAAACTCTCTCTACCGCACGTACAC
ACACCCGACCCGCGCGACATATGAACAACCGCCTCAGATCACTTGAACGA
CGAGTTGGAATGCCTGCGATGCCTGCGGCTGTGTAGATTAATTAGACTAC
ACGTATATATAGAGACTGCACCACCAGTTTTTCACCAAACAGGAGCACTT
CCTAATTTGATTGAAAGGCATAAGCGCCAGCTACCACCAACTCGTTTTCC
ATGCTTTCGTGAGACCCTCTGGCCGTATTCACGGTGTGTTTGAAGAGGTG
TGCTTGCATCTCGCCGTTGCTCAATAAAAATGAAGGATCGCGCCGCCTCC
ACATTCCACCAGTCCCGCGAACAAACTTTTGTTCGCCCCATAAAGAGCGT
GCAAGAAAAGCTGCACTGGCCAAAAATCTCGACAAAAAGTTGGGAAAAAA
GTCAAACTTTTCTCTCAACTTTTCGCTCCCATAAAAACCGGTGTTAGGTC
AGTAATAACCACAAACTGCAGCCAATGGCGTGGGGTCATACCCATGGCCT
CTGCAGGCGTCCCAAAACCAGGGCTTTCTGTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16842:3..936+

>mRNA_L-elsbetiae_contig16842.4594.1 ID=mRNA_L-elsbetiae_contig16842.4594.1|Name=mRNA_L-elsbetiae_contig16842.4594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig16842:3..936+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGCGCGCGACCAGCCAACGTCGACTGAAGTTGATTTCAGTGCGGAAAT
TTTTCGACTCTTGTTGCATTTTTCCGTCCTTGTGTTGATGTGTCACCAAA
AACCGCATGCCCGACGGAGGCATTACACCGGAGTGCGCGCGACCAGCCAA
CGTCGACTGAAGTTGATTTCAGTGCGGAAATTTTTCGACTCTTGTTGCAT
TTTTCCGTCCTTGTGTTGATGTGTCACCAAAAACCGCATGCCCGACGGAG
GCATTACACCGGTAATAACCACAAACTGCAGCCAATGGCGTGGGGTCATA
CCCATGGCCTCTGCAGGCGTCCCAAAACCAGGGCTTTCTGTGCATAATAA
CCACAAACTGCAGCCAATGGCGTGGGGTCATACCCATGGCCTCTGCAGGC
GTCCCAAAACCAGGGCTTTCTGTGCA
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