mRNA_L-elsbetiae_contig1684.4592.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1684.4592.1
Unique NamemRNA_L-elsbetiae_contig1684.4592.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1684.4592.1 vs. uniprot
Match: D8LF15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF15_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.030e-27
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 QTANIDSDPWRLASFGVIDLLKKLVEDHGVDVDAKDDRGMPPIIWAIRSGHEEVATYLLD 180
            Q ANIDSDPWRLASFGVIDLLKKLVE+ G+DV+AKDDRGMPPIIWAIRSGHEEVATYLLD
Sbjct:   25 QAANIDSDPWRLASFGVIDLLKKLVEEGGIDVNAKDDRGMPPIIWAIRSGHEEVATYLLD 84
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BLAST of mRNA_L-elsbetiae_contig1684.4592.1 vs. uniprot
Match: A0A7S2D3I5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3I5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.990e-12
Identity = 31/59 (52.54%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 QTANIDSDPWRLASFGVIDLLKKLVEDHGVDVDAKDDRGMPPIIWAIRSGHEEVATYLL 177
            + A +DSD  +LA+FG++D+LKKLVE+ G DV++ DD+   P+IWAIR+GH++V  YL+
Sbjct:    7 EVATVDSDIHKLAAFGILDILKKLVEEEGADVNSLDDQKCAPLIWAIRNGHKDVTKYLI 65
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BLAST of mRNA_L-elsbetiae_contig1684.4592.1 vs. uniprot
Match: A0A6S9F9Q9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9F9Q9_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 4.620e-10
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    7 ANIDSDPWRLASFGVIDLLKKLVEDHGVDVDAKDDRGMPPIIWAIRSGHEEVATYLLD 180
            A+ID+ P RLA+ G++DLLKK  E H  +V+A DDRG  P+IWA R+GH EV  YL++
Sbjct:   19 ADIDNQPHRLAANGILDLLKKYFEAHEDEVNAVDDRGCTPLIWAARNGHIEVVKYLVE 76
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BLAST of mRNA_L-elsbetiae_contig1684.4592.1 vs. uniprot
Match: A0A7S2V3X0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3X0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.750e-8
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 QTANIDSDPWRLASFGVIDLLKKLVEDHGVDVDAKDDRGMPPIIWAIRSGHEEVATYLLD 180
            + A IDSDP+RLA+FG+IDLLKK   ++  +++  D  G   ++WA R+GH  VA YL+D
Sbjct:   13 EAAAIDSDPFRLAAFGIIDLLKKYFGENMEEINQTDKLGCTALVWACRNGHLSVAEYLVD 72
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BLAST of mRNA_L-elsbetiae_contig1684.4592.1 vs. uniprot
Match: A0A836CKL3_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-7
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 QTANIDSDPWRLASFGVIDLLKKLVEDHGVDVDAKDDRGMPPIIW 135
            + A +DSDPWRLASFG++DLLK  +E  G  VD  D RGM P++W
Sbjct:   23 RVAAVDSDPWRLASFGMVDLLKVQMEKKGAQVDQVDQRGMTPLLW 67
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BLAST of mRNA_L-elsbetiae_contig1684.4592.1 vs. uniprot
Match: A0A2R5GNV3_9STRA (Ankyrin repeat domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNV3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.200e-7
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 QTANIDSDPWRLASFGVIDLLKKLVEDHG--VDVDAKDDRGMPPIIWAIRSGHEEVATYLLD 180
            Q   I+S+PW+LA  G +  LK LVE     VDV+A+DD G  PIIWA RSG+ +  TYL++
Sbjct:   11 QVPEIESNPWKLAGIGDVAALKGLVEREKDPVDVNAEDDYGCQPIIWAARSGYVDAVTYLVE 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1684.4592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LF15_ECTSI2.030e-2791.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2D3I5_9STRA4.990e-1252.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6S9F9Q9_HETAK4.620e-1055.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V3X0_9STRA1.750e-848.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CKL3_9STRA1.020e-757.78Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A2R5GNV3_9STRA1.200e-750.00Ankyrin repeat domain-containing protein 1 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1684contigL-elsbetiae_contig1684:1263..3430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog2880.D8LF15
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-21_006340.1
Exons4
Model size1071
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1684.4592.1prot_L-elsbetiae_contig1684.4592.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1684 1380..3031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.4126756-UTR-L-elsbetiae_contig1684:1262..13791622815699.4126756-UTR-L-elsbetiae_contig1684:1262..1379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1684 1263..1379 +
1691683045.797696-UTR-L-elsbetiae_contig1684:1262..13791691683045.797696-UTR-L-elsbetiae_contig1684:1262..1379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1684 1263..1379 +
1622815699.470558-UTR-L-elsbetiae_contig1684:3031..34301622815699.470558-UTR-L-elsbetiae_contig1684:3031..3430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1684 3032..3430 +
1691683045.8555105-UTR-L-elsbetiae_contig1684:3031..34301691683045.8555105-UTR-L-elsbetiae_contig1684:3031..3430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1684 3032..3430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.4267285-CDS-L-elsbetiae_contig1684:1379..14051622815699.4267285-CDS-L-elsbetiae_contig1684:1379..1405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 1380..1405 +
1691683045.8096948-CDS-L-elsbetiae_contig1684:1379..14051691683045.8096948-CDS-L-elsbetiae_contig1684:1379..1405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 1380..1405 +
1622815699.4387672-CDS-L-elsbetiae_contig1684:1706..18761622815699.4387672-CDS-L-elsbetiae_contig1684:1706..1876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 1707..1876 +
1691683045.820923-CDS-L-elsbetiae_contig1684:1706..18761691683045.820923-CDS-L-elsbetiae_contig1684:1706..1876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 1707..1876 +
1622815699.4486966-CDS-L-elsbetiae_contig1684:2238..24011622815699.4486966-CDS-L-elsbetiae_contig1684:2238..2401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 2239..2401 +
1691683045.8324907-CDS-L-elsbetiae_contig1684:2238..24011691683045.8324907-CDS-L-elsbetiae_contig1684:2238..2401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 2239..2401 +
1622815699.460535-CDS-L-elsbetiae_contig1684:2835..30311622815699.460535-CDS-L-elsbetiae_contig1684:2835..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 2836..3031 +
1691683045.8443708-CDS-L-elsbetiae_contig1684:2835..30311691683045.8443708-CDS-L-elsbetiae_contig1684:2835..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1684 2836..3031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1684.4592.1

>prot_L-elsbetiae_contig1684.4592.1 ID=prot_L-elsbetiae_contig1684.4592.1|Name=mRNA_L-elsbetiae_contig1684.4592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MPPIIWAIRSGHEEVATYLLDRGADIESFGYAGMRALHHACSCSHESCIA
LLLDRGADANAVDEYGNTALHYAAARGVLNIILRLMSSGAEPDVANVHGS
TPLHKACAFGQNAVVKKLVEKGSEVGRGDKDNNTPLHVAARSGFGSLVSV
LLDLGAPIQVANKSGKSPIDLALDSSIATLLTGP*
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mRNA from alignment at L-elsbetiae_contig1684:1263..3430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1684.4592.1 ID=mRNA_L-elsbetiae_contig1684.4592.1|Name=mRNA_L-elsbetiae_contig1684.4592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2168bp|location=Sequence derived from alignment at L-elsbetiae_contig1684:1263..3430+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACCGCGAACATTGACAGCGACCCTTGGCGACTGGCAAGTTTTGGGGT
AATTGATCTCCTGAAAAAGCTTGTTGAGGATCACGGCGTTGATGTAGATG
CCAAGGATGATCGGGGCATGCCGCCCATCATATGGGCGATAAGGTGAGCC
CAACGACGCTTTCTTGGAAGTTCAAGCGCAACTTAACATCAACCCTGATG
CGGTAAGACGCAATGATAAAGATGCGCATTGGCGATGAATACGTAAGGTA
TCATCCAACGCCGCTGTCGTCGCGATATTCACTTAATTCGCAATCTAGGT
TACGGAGGGTGGTAGCCACAGCAGTGAAACAAAATGCCGTTCCTATAGTC
CCTGCGACGAAGTTTTGTACCACGCGATACTCGAACCCTCTGCCACCGGC
ACCAATGCCAATACTCTTCACTCACTGCCTGCACCAATTCGAAGGAGCGG
GCACGAAGAAGTGGCTACCTACCTGCTAGATCGAGGTGCAGATATCGAAT
CTTTCGGGTACGCCGGCATGAGGGCCCTGCATCACGCGTGTAGCTGTTCT
CACGAAAGCTGCATTGCTCTCCTGTTGGACCGGGGCGCAGATGCCAACGC
CGTCGACGAATATGGTGAATACATAGTTCGCAGGACTTAGTGATGCGGGC
GTGTCTTCATCATCGGCGGAGCAAGCTTTCTGCCTGGGTTTGATGTTTCA
CCTTCGCTGATGCTGTCCAACATTCGGGAGTAGATATCAATTTAACGCTC
CATACTGCGATATTAGGATAACCTGCTCTGGAGAGCGATACTAGGAAGAT
CAGATGGAACATGCATTGCGACCGACGCACGTTGTCGTGGTTTGAATAAG
CCGCTCGATAGAAAAACCCTACCCACTCGCACATCATACATCATACCCCC
ACCTTCTTCTACTCCAGCCCGTAGGGATGGCTTGCTTGTAAAATCTCCAT
TGTACACTCGTTCCCCGTTGCCCCAGGCAACACAGCGCTTCACTATGCGG
CCGCACGGGGGGTGCTGAACATCATTCTTCGCCTGATGAGCAGCGGGGCG
GAGCCAGACGTGGCGAACGTCCACGGATCGACGCCGCTCCACAAGGCCTG
CGCGTTTGGGCAGAATGCGGTTGTCAAGAAGCTCGTCGAGTGAGTTGCAG
ATGGGATGGTAACGTAAAAGCTCGCCAGCTGGAGACGTGTTAATCGATTC
TTGCGGTAAAACTGTTTGTTTGCTCCGTGGTTCCACTTGAGGCGAGGGCA
AGTACGTGTGACATGCTGGCGTTCGTGCTGTGGAGTAACTTTCAGTAGGC
CGTAGTCGCCATTAAGTTGACGGTATTTTCGTAGAGAGGTCTTCTACTCG
CATAGACTAGATACATATCTCGGGATGATTTTTACACCTATAGTGCTAGG
ACTGCACACGGGTAAAAAATAGAGGTCGTGTACACTTTAGTCTAGACTAT
CTTCTTCTCTGGCTCAACTTCCCATTTCTCGCCTCCCTTCGCTCCTCTCC
TCGCCCTCCTCTCTGTCTCGATCTCTCCTTCTCCCTCTCTCTCCTTCCGA
CTGTCTCTGTCTCTCTCTCTCAGGAAAGGATCAGAAGTGGGGCGGGGCGA
CAAGGACAACAATACGCCTCTGCATGTAGCCGCAAGGAGCGGTTTCGGCT
CGCTGGTATCGGTGCTCTTAGACCTGGGTGCTCCCATTCAAGTGGCGAAC
AAGTCGGGCAAGTCCCCCATCGACCTCGCGCTTGATTCCTCTATCGCGAC
GCTTCTGACGGGACCATAAAAACACTGTTGTTGTAGATTTGTGGCGTTGT
GCATGGATCTCCATCTATGCTAAGACCTCGACAGGTGACTGGCTACAGCA
GTAGCTTTCCCTCTACAGGCTTCTGTAGGATGAGACGGGGGATTGAAACT
GGGGACGAAGATTCAACTATTAGACTAGTCTAAGCCACATCAATTCACAA
TACTTTAGGGCCTATCCTGTACAAAACGACCCAGGAGCTAGAACGAGCGT
CTTGGTTACTACGTATATTCCAAGCGTTCGAACCACGCACGGCGCTCTCT
TGACGGTAACGATGATGATGATGATGGCGTTTTCCGAGGAGGTTCTACAA
ATAGATGGCCTAGGGGTTGTAGGTTCCCCTCGGCTGCTTCCTTAGTTTTT
TTTGTAGTTATCGCAGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1684:1263..3430+

>mRNA_L-elsbetiae_contig1684.4592.1 ID=mRNA_L-elsbetiae_contig1684.4592.1|Name=mRNA_L-elsbetiae_contig1684.4592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig1684:1263..3430+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCCATCATATGGGCGATAAGATGCCGCCCATCATATGGGCGATA
AGGAGCGGGCACGAAGAAGTGGCTACCTACCTGCTAGATCGAGGTGCAGA
TATCGAATCTTTCGGGTACGCCGGCATGAGGGCCCTGCATCACGCGTGTA
GCTGTTCTCACGAAAGCTGCATTGCTCTCCTGTTGGACCGGGGCGCAGAT
GCCAACGCCGTCGACGAATATGGAGCGGGCACGAAGAAGTGGCTACCTAC
CTGCTAGATCGAGGTGCAGATATCGAATCTTTCGGGTACGCCGGCATGAG
GGCCCTGCATCACGCGTGTAGCTGTTCTCACGAAAGCTGCATTGCTCTCC
TGTTGGACCGGGGCGCAGATGCCAACGCCGTCGACGAATATGGCAACACA
GCGCTTCACTATGCGGCCGCACGGGGGGTGCTGAACATCATTCTTCGCCT
GATGAGCAGCGGGGCGGAGCCAGACGTGGCGAACGTCCACGGATCGACGC
CGCTCCACAAGGCCTGCGCGTTTGGGCAGAATGCGGTTGTCAAGAAGCTC
GTCGAGCAACACAGCGCTTCACTATGCGGCCGCACGGGGGGTGCTGAACA
TCATTCTTCGCCTGATGAGCAGCGGGGCGGAGCCAGACGTGGCGAACGTC
CACGGATCGACGCCGCTCCACAAGGCCTGCGCGTTTGGGCAGAATGCGGT
TGTCAAGAAGCTCGTCGAGAAAGGATCAGAAGTGGGGCGGGGCGACAAGG
ACAACAATACGCCTCTGCATGTAGCCGCAAGGAGCGGTTTCGGCTCGCTG
GTATCGGTGCTCTTAGACCTGGGTGCTCCCATTCAAGTGGCGAACAAGTC
GGGCAAGTCCCCCATCGACCTCGCGCTTGATTCCTCTATCGCGACGCTTC
TGACGGGACCATAAGAAAGGATCAGAAGTGGGGCGGGGCGACAAGGACAA
CAATACGCCTCTGCATGTAGCCGCAAGGAGCGGTTTCGGCTCGCTGGTAT
CGGTGCTCTTAGACCTGGGTGCTCCCATTCAAGTGGCGAACAAGTCGGGC
AAGTCCCCCATCGACCTCGCGCTTGATTCCTCTATCGCGACGCTTCTGAC
GGGACCATAA
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