mRNA_L-elsbetiae_contig16833.4591.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16833.4591.1
Unique NamemRNA_L-elsbetiae_contig16833.4591.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: A0A6H5JP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP05_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.600e-31
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQ 204
            V LLGP+G EVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDE GKATLRVRIEEVSKNHQKQ
Sbjct:  188 VHLLGPSGEEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 255
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: D8LAY0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.360e-26
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEE 180
            V LLGP+G EVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDE GKATLRVRIEE
Sbjct:  188 VHLLGPSGEEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDEHGKATLRVRIEE 247
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: A0A836CR41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR41_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.320e-22
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVWYI 216
            V LL   G EV +RRV LRLVL+YDN+ RVQNQEILKLSPDSK+ ID+ GKA LR+RIEEVSKNHQKQ + I
Sbjct:  166 VHLLDKDGHEVTTRRVKLRLVLLYDNLGRVQNQEILKLSPDSKMAIDDEGKAMLRLRIEEVSKNHQKQAFRI 237
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: A0A1W0A8H7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8H7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.940e-15
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVW 210
            V L+  +   V +R VPLR+ L+YDN H V  Q+ILK+SPDS+ VID+ GKA L++RIE+VSKNHQ Q +
Sbjct:  153 VHLVDQSNNPVGTRPVPLRVTLLYDNEHAVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQAF 222
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: A0A1V9YPE3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPE3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-14
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVW 210
            V L+      V SR VPLR+ L+Y+N H V  Q+ILK+SPDS+ VID+ GKA L++RIE+VSKNHQ Q +
Sbjct:  154 VHLVDHNNNTVGSRPVPLRVTLLYENEHPVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQAF 223
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: T0QE37_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QE37_SAPDV)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-14
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVW 210
            V L+      V SR VPLR+ L+Y+N H V  Q+ILK+SPDS+ VID+ GKA L++RIE+VSKNHQ Q +
Sbjct:  155 VHLVDHNNNPVGSRPVPLRVTLLYENEHPVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQAF 224
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: A0A485LTJ6_9STRA (Aste57867_25083 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTJ6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.120e-13
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVW 210
            V L+  +   V  R VPLR+ L+Y+N H V  Q+ILKLSPDS+ VID  G+A L++RIE+VSKNHQ Q +
Sbjct:  157 VHLVDASNQTVGHRPVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSNGQALLKLRIEDVSKNHQGQAF 226
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: W4GFW1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFW1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.860e-13
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVW 210
            V L+      V  R VPLR+ L+Y+N H V  Q+ILKLSPDS+ VID  G A L++RIE+VSKNHQ Q +
Sbjct:  163 VHLVDATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQAF 232
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: A0A397AVR5_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AVR5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.910e-13
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVW 210
            V L+      V  R VPLR+ L+Y+N H V  Q+ILKLSPDS+ VID  G A L++RIE+VSKNHQ Q +
Sbjct:  840 VHLVDATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQAF 909
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BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Match: A0A024TWZ7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWZ7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.900e-13
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERGKATLRVRIEEVSKNHQKQVW 210
            V L+      V  R VPLR+ L+Y+N H V  Q+ILKLSPDS+ VID  G A L++RIE+VSKNHQ Q +
Sbjct:  162 VLLVDATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDNNGMALLKLRIEDVSKNHQGQAF 231
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16833.4591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP05_9PHAE1.600e-3194.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAY0_ECTSI1.360e-2693.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CR41_9STRA1.320e-2272.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1W0A8H7_9STRA1.940e-1555.71Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9YPE3_9STRA1.260e-1455.71Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QE37_SAPDV1.260e-1455.71Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A485LTJ6_9STRA1.120e-1354.29Aste57867_25083 protein n=1 Tax=Aphanomyces stella... [more]
W4GFW1_9STRA2.860e-1354.29Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397AVR5_9STRA2.910e-1354.29Uncharacterized protein n=13 Tax=Aphanomyces astac... [more]
A0A024TWZ7_9STRA3.900e-1354.29Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16833contigL-elsbetiae_contig16833:793..1017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue7.5e-22
Seed eggNOG ortholog2880.D8LAY0
Hectar predicted targeting categoryother localisation
EggNOG OGs2CM82@1,2QPK2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.3711412-CDS-L-elsbetiae_contig16833:792..10171622815699.3711412-CDS-L-elsbetiae_contig16833:792..1017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16833 793..1017 -
1691683045.7766159-CDS-L-elsbetiae_contig16833:792..10171691683045.7766159-CDS-L-elsbetiae_contig16833:792..1017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16833 793..1017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16833.4591.1prot_L-elsbetiae_contig16833.4591.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16833 793..1017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16833.4591.1

>prot_L-elsbetiae_contig16833.4591.1 ID=prot_L-elsbetiae_contig16833.4591.1|Name=mRNA_L-elsbetiae_contig16833.4591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
VRLLGPAGGEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDERG
KATLRVRIEEVSKNHQKQVWYIQP*
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mRNA from alignment at L-elsbetiae_contig16833:793..1017-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16833.4591.1 ID=mRNA_L-elsbetiae_contig16833.4591.1|Name=mRNA_L-elsbetiae_contig16833.4591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=225bp|location=Sequence derived from alignment at L-elsbetiae_contig16833:793..1017- (Laminarionema elsbetiae ELsaHSoW15)
GTGCGCCTGCTAGGGCCTGCCGGGGGAGAGGTGAAGAGCCGCCGCGTGCC
TCTCAGGCTGGTTCTCATGTACGACAACATGCACAGGGTGCAGAACCAGG
AGATCCTGAAGCTCTCCCCGGACAGCAAGCTGGTCATCGACGAGCGCGGG
AAGGCGACGCTCCGCGTCCGCATCGAGGAGGTCTCCAAGAACCACCAGAA
GCAGGTATGGTACATACAACCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16833:793..1017-

>mRNA_L-elsbetiae_contig16833.4591.1 ID=mRNA_L-elsbetiae_contig16833.4591.1|Name=mRNA_L-elsbetiae_contig16833.4591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig16833:793..1017- (Laminarionema elsbetiae ELsaHSoW15)
GTGCGCCTGCTAGGGCCTGCCGGGGGAGAGGTGAAGAGCCGCCGCGTGCC
TCTCAGGCTGGTTCTCATGTACGACAACATGCACAGGGTGCAGAACCAGG
AGATCCTGAAGCTCTCCCCGGACAGCAAGCTGGTCATCGACGAGCGCGGG
AAGGCGACGCTCCGCGTCCGCATCGAGGAGGTCTCCAAGAACCACCAGAA
GCAGGTATGGTACATACAACCGTAGGTGCGCCTGCTAGGGCCTGCCGGGG
GAGAGGTGAAGAGCCGCCGCGTGCCTCTCAGGCTGGTTCTCATGTACGAC
AACATGCACAGGGTGCAGAACCAGGAGATCCTGAAGCTCTCCCCGGACAG
CAAGCTGGTCATCGACGAGCGCGGGAAGGCGACGCTCCGCGTCCGCATCG
AGGAGGTCTCCAAGAACCACCAGAAGCAGGTATGGTACATACAACCGTAG
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