mRNA_L-elsbetiae_contig16829.4587.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16829.4587.1
Unique NamemRNA_L-elsbetiae_contig16829.4587.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16829.4587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16829contigL-elsbetiae_contig16829:2292..2630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size341
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.8413887-CDS-L-elsbetiae_contig16829:2291..26001622815698.8413887-CDS-L-elsbetiae_contig16829:2291..2600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16829 2292..2600 +
1691683045.4230666-CDS-L-elsbetiae_contig16829:2291..26001691683045.4230666-CDS-L-elsbetiae_contig16829:2291..2600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16829 2292..2600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.8542542-UTR-L-elsbetiae_contig16829:2600..26301622815698.8542542-UTR-L-elsbetiae_contig16829:2600..2630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16829 2601..2630 +
1691683045.4316845-UTR-L-elsbetiae_contig16829:2600..26301691683045.4316845-UTR-L-elsbetiae_contig16829:2600..2630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16829 2601..2630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16829.4587.1prot_L-elsbetiae_contig16829.4587.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16829 2292..2600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16829.4587.1

>prot_L-elsbetiae_contig16829.4587.1 ID=prot_L-elsbetiae_contig16829.4587.1|Name=mRNA_L-elsbetiae_contig16829.4587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
RSNETAKDPPTEIIRQQRQGNEAGNDRNCTRRAQDEGRDGRSSATCCGFN
QLLAVPSCATTRGIRSVCLLSCLGSFFALILFPIMWAVNSVGRTYTKYMF
WA*
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mRNA from alignment at L-elsbetiae_contig16829:2292..2630+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16829.4587.1 ID=mRNA_L-elsbetiae_contig16829.4587.1|Name=mRNA_L-elsbetiae_contig16829.4587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=339bp|location=Sequence derived from alignment at L-elsbetiae_contig16829:2292..2630+ (Laminarionema elsbetiae ELsaHSoW15)
CGATCGAACGAGACAGCAAAGGACCCACCAACAGAAATAATACGACAACA
ACGACAGGGGAACGAGGCCGGAAACGATCGAAACTGCACGCGACGTGCGC
AGGATGAGGGCAGAGACGGGCGCAGTAGTGCGACATGTTGCGGGTTTAAT
CAATTATTGGCTGTACCATCTTGCGCCACCACCAGAGGAATCAGGAGCGT
TTGTTTATTATCGTGTCTGGGGTCCTTTTTCGCCCTGATCCTGTTTCCTA
TCATGTGGGCGGTAAATTCGGTGGGGAGGACTTATACGAAGTATATGTTT
TGGGCCTGACCGGCGAGAACCCGGCACGGAACAACCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16829:2292..2630+

>mRNA_L-elsbetiae_contig16829.4587.1 ID=mRNA_L-elsbetiae_contig16829.4587.1|Name=mRNA_L-elsbetiae_contig16829.4587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig16829:2292..2630+ (Laminarionema elsbetiae ELsaHSoW15)
CGATCGAACGAGACAGCAAAGGACCCACCAACAGAAATAATACGACAACA
ACGACAGGGGAACGAGGCCGGAAACGATCGAAACTGCACGCGACGTGCGC
AGGATGAGGGCAGAGACGGGCGCAGTAGTGCGACATGTTGCGGGTTTAAT
CAATTATTGGCTGTACCATCTTGCGCCACCACCAGAGGAATCAGGAGCGT
TTGTTTATTATCGTGTCTGGGGTCCTTTTTCGCCCTGATCCTGTTTCCTA
TCATGTGGGCGGTAAATTCGGTGGGGAGGACTTATACGAAGTATATGTTT
TGGGCCTGACGATCGAACGAGACAGCAAAGGACCCACCAACAGAAATAAT
ACGACAACAACGACAGGGGAACGAGGCCGGAAACGATCGAAACTGCACGC
GACGTGCGCAGGATGAGGGCAGAGACGGGCGCAGTAGTGCGACATGTTGC
GGGTTTAATCAATTATTGGCTGTACCATCTTGCGCCACCACCAGAGGAAT
CAGGAGCGTTTGTTTATTATCGTGTCTGGGGTCCTTTTTCGCCCTGATCC
TGTTTCCTATCATGTGGGCGGTAAATTCGGTGGGGAGGACTTATACGAAG
TATATGTTTTGGGCCTGA
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