mRNA_L-elsbetiae_contig1682.4582.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1682.4582.1
Unique NamemRNA_L-elsbetiae_contig1682.4582.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: D7FLF7_ECTSI (Probable Spc3 homolog, subunit of Signal Peptidase Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.060e-60
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQAS 297
            MHTAWVR+NAV FFGLTVLL LSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYET TNPVNQAS
Sbjct:    1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQAS 99
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A835YJ42_9STRA (Signal peptidase 22kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ42_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.520e-38
Identity = 61/97 (62.89%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            M+T WVRLNAV FFGLTVLLGL+++TA STYLH+G P V+ L ++K ++FR     DR ++N D++ADLAPAFNWN+KQ+F FVVAE+ T+TNP+NQ
Sbjct:    1 MNTVWVRLNAVVFFGLTVLLGLALMTATSTYLHEGHPTVKTLRLNKIKSFRSQSKVDRAIINFDLEADLAPAFNWNIKQIFVFVVAEFATKTNPLNQ 97
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A6V1NT77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NT77_HETAK)

HSP 1 Score: 129 bits (325), Expect = 3.690e-36
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            M+T WVR+NAV FFGLTVLL L+++ A STYLH+G P+++ LGV+  R+ +   G DR L++ D+DADL PAFNWN+KQLF FVVAEY TE NP+NQ
Sbjct:    4 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKNPLNQ 100
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A7S2XZ74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ74_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.710e-33
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            M+T WVRLNAV FFG TVLL L+ + + ST+LH+G P ++ LG++  R+ R  +G DR+L++ D+DADL+ AFNWN+KQLF FVVAEY T+TNP NQ
Sbjct:    1 MNTIWVRLNAVVFFGFTVLLCLACMCSFSTFLHKGEPHIKYLGLNTIRSMRAQKGGDRVLISFDIDADLSGAFNWNIKQLFVFVVAEYATKTNPFNQ 97
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A7S4J3F9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3F9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.610e-32
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGF--PDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            MHT WVRLNAV FFGLTVLLGLS+L ALS   H     PDV++L +   R+ +   G DR LL+ D+D DL PAF+WN+KQLF +VVA YE++TNP NQ
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLGLSILAALSKSGHSNRYRPDVKRLELKTLRSLKSHGGVDRALLSFDIDVDLRPAFHWNIKQLFVYVVASYESDTNPNNQ 99
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A7S2SN40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN40_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.980e-31
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            MHT WVRLNAV FFGLTV++ L+VLT  ST  H+G+P V  L ++   T R     D  +L+ D+ ADL+PAFNWN+KQLF FVVAEY T+TNP+NQ
Sbjct:    1 MHTVWVRLNAVVFFGLTVIVVLAVLTWFSTVTHRGYPTVDTLQLNSIGTLRNHGERDIAILSFDLHADLSPAFNWNIKQLFVFVVAEYRTKTNPLNQ 97
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A7S2XM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM83_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.190e-30
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLH--QGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            MHT WVRLNAV FFGLTVLLGLSVL A+S   H  +  P V KL +++ R+ +   G DR LL+ D+ AD+ PAF+WN+KQLF +VVA YET+TNP NQ
Sbjct:    5 MHTVWVRLNAVVFFGLTVLLGLSVLAAISAIGHSTRHKPVVSKLSLNQLRSLKSHGGVDRALLSFDLHADMRPAFHWNIKQLFVYVVASYETDTNPNNQ 103
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A7R9UGA1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGA1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.040e-30
Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYL-HQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            MHT WVRLNAV FF  TVLL LS L A+ T L H G P V  L + + R+ RK    DR +L  D+DADL  AFNWNVKQLF FVVAEY T+TNP+NQ
Sbjct:   18 MHTIWVRLNAVVFFSFTVLLALSTLAAVQTMLFHDGQPVVHTLRLRELRSLRKHANIDRAMLTFDIDADLRGAFNWNVKQLFVFVVAEYATQTNPLNQ 115
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: A0A7S2IIZ8_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2IIZ8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.170e-28
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGF--PDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            MHT WVRLNAV FFGLTVLLGLS+  A+S + H     P V KL ++K R+ +   G DR LL+ D+  DL PAF+WN+KQLF +V+A YET+ NP N+
Sbjct:   24 MHTVWVRLNAVVFFGLTVLLGLSIAAAISKWGHASRHKPVVEKLKLNKLRSLKSHGGVDRALLSFDLHVDLTPAFHWNIKQLFVYVIATYETDKNPKNE 122
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BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Match: B8CCG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG8_THAPS)

HSP 1 Score: 109 bits (272), Expect = 3.660e-28
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLH--QGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQ 291
            MHT WVRLNAV FFGLTVLL LS+L ALS   H  +  P + KL ++  R+ +   G DR LL+ D+ AD+ PAF+WN+KQ+F +VVA Y+T+TNP NQ
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLCLSILAALSKIGHTRRYQPKIHKLALNNLRSVKNHGGVDRALLSFDLHADMNPAFHWNIKQIFVYVVATYKTDTNPKNQ 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1682.4582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF7_ECTSI4.060e-6095.96Probable Spc3 homolog, subunit of Signal Peptidase... [more]
A0A835YJ42_9STRA3.520e-3862.89Signal peptidase 22kDa subunit n=1 Tax=Tribonema m... [more]
A0A6V1NT77_HETAK3.690e-3661.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZ74_9STRA1.710e-3358.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4J3F9_9STRA8.610e-3259.60Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2SN40_9STRA6.980e-3158.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XM83_9STRA1.190e-3059.60Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7R9UGA1_9STRA2.040e-3061.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2IIZ8_9STRA1.170e-2855.56Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]
B8CCG8_THAPS3.660e-2855.56Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1682contigL-elsbetiae_contig1682:10826..11245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2.2e-45
Seed eggNOG ortholog2880.D7FLF7
Preferred nameSPCS3
KEGG koko:K12948
KEGG Pathwayko03060,map03060
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0030054,GO:0030154,GO:0030312,GO:0031984,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045444,GO:0046907,GO:0048869,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.signal peptide processing
EggNOG OGsKOG3372@1,KOG3372@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionProbable Spc3 homolog, subunit of Signal Peptidase Complex
Ec32 orthologEc-12_007990.1
Exons2
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.5709305-CDS-L-elsbetiae_contig1682:10825..109281622815698.5709305-CDS-L-elsbetiae_contig1682:10825..10928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1682 10826..10928 +
1691683045.2448578-CDS-L-elsbetiae_contig1682:10825..109281691683045.2448578-CDS-L-elsbetiae_contig1682:10825..10928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1682 10826..10928 +
1622815698.5814316-CDS-L-elsbetiae_contig1682:11051..112451622815698.5814316-CDS-L-elsbetiae_contig1682:11051..11245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1682 11052..11245 +
1691683045.2554934-CDS-L-elsbetiae_contig1682:11051..112451691683045.2554934-CDS-L-elsbetiae_contig1682:11051..11245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1682 11052..11245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1682.4582.1prot_L-elsbetiae_contig1682.4582.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1682 10826..11245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1682.4582.1

>prot_L-elsbetiae_contig1682.4582.1 ID=prot_L-elsbetiae_contig1682.4582.1|Name=mRNA_L-elsbetiae_contig1682.4582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MHTAWVRLNAVTFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTF
RKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETETNPVNQAS
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mRNA from alignment at L-elsbetiae_contig1682:10826..11245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1682.4582.1 ID=mRNA_L-elsbetiae_contig1682.4582.1|Name=mRNA_L-elsbetiae_contig1682.4582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig1682:10826..11245+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATACCGCGTGGGTTCGTCTGAACGCAGTAACATTTTTTGGCCTTAC
TGTCCTCCTCGGACTGAGCGTACTCACGGCACTGAGTACCTATCTCCATC
AAGGTAGGTCGGAGGGGTTGAATATCTACCTGTATGCGGCGTGTAGCTGT
CTGTATGTTACATAACGTTCCCTCTCCTCGAGCTCTGTGATAGATACATT
TATGTTATTGTGTTTGCAATGACCAGGGTTCCCGGATGTCAGGAAGCTAG
GAGTAAGCAAGTTCCGGACATTTCGAAAGTCTGAGGGCACAGATCGATTG
CTTCTAAACATCGATGTGGACGCTGATCTAGCCCCGGCGTTTAACTGGAA
CGTCAAGCAGCTGTTCGCGTTTGTGGTGGCTGAATACGAGACCGAGACTA
ACCCGGTGAACCAGGCAAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1682:10826..11245+

>mRNA_L-elsbetiae_contig1682.4582.1 ID=mRNA_L-elsbetiae_contig1682.4582.1|Name=mRNA_L-elsbetiae_contig1682.4582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1682:10826..11245+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATACCGCGTGGGTTCGTCTGAACGCAGTAACATTTTTTGGCCTTAC
TGTCCTCCTCGGACTGAGCGTACTCACGGCACTGAGTACCTATCTCCATC
AAGATGCATACCGCGTGGGTTCGTCTGAACGCAGTAACATTTTTTGGCCT
TACTGTCCTCCTCGGACTGAGCGTACTCACGGCACTGAGTACCTATCTCC
ATCAAGGGTTCCCGGATGTCAGGAAGCTAGGAGTAAGCAAGTTCCGGACA
TTTCGAAAGTCTGAGGGCACAGATCGATTGCTTCTAAACATCGATGTGGA
CGCTGATCTAGCCCCGGCGTTTAACTGGAACGTCAAGCAGCTGTTCGCGT
TTGTGGTGGCTGAATACGAGACCGAGACTAACCCGGTGAACCAGGCAAGT
GGTTCCCGGATGTCAGGAAGCTAGGAGTAAGCAAGTTCCGGACATTTCGA
AAGTCTGAGGGCACAGATCGATTGCTTCTAAACATCGATGTGGACGCTGA
TCTAGCCCCGGCGTTTAACTGGAACGTCAAGCAGCTGTTCGCGTTTGTGG
TGGCTGAATACGAGACCGAGACTAACCCGGTGAACCAGGCAAGT
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