mRNA_L-elsbetiae_contig16815.4579.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16815.4579.1
Unique NamemRNA_L-elsbetiae_contig16815.4579.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A6H5KA64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA64_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.620e-46
Identity = 88/101 (87.13%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQVKKM 303
            SQRFL++EGR+NYTTPKSFLELI FYKELLRKK GELDGNI+RLANGLQTLRKTNDDVQTLRDDLKLKMKEV+AKK GT+VLLEEMG QRSEAEAQQ+ K+
Sbjct:  597 SQRFLQEEGRHNYTTPKSFLELIGFYKELLRKKKGELDGNINRLANGLQTLRKTNDDVQTLRDDLKLKMKEVDAKKRGTDVLLEEMGTQRSEAEAQQMTKV 697
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: D7FLQ8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ8_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.360e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRS 273
            SQRFL++EGRYNYTTPKSFLELIDFYKELLRKK GELDGNI+RLANGLQTLRKTNDDVQTLRDDLKLKMKEV+AKK GT+VLLEEMG QRS
Sbjct: 3328 SQRFLQEEGRYNYTTPKSFLELIDFYKELLRKKQGELDGNINRLANGLQTLRKTNDDVQTLRDDLKLKMKEVDAKKRGTDVLLEEMGTQRS 3418
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A482SY26_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY26_9ARCH)

HSP 1 Score: 112 bits (280), Expect = 1.090e-26
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQ 291
            S  + + E RYNYTTPKSFLEL+ FYK LLR++  +L GNI RL  GL TL++TN DV+ L++ LK K KEVEAKK  T+ LLEEMG QRSEAEAQQ
Sbjct: 1180 SADYFKREKRYNYTTPKSFLELVAFYKSLLREQRNDLHGNIKRLDTGLLTLQRTNQDVEKLQEFLKEKKKEVEAKKQATDKLLEEMGQQRSEAEAQQ 1276
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A7S3HHQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHQ5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.390e-21
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   46 PKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQ 291
            PKSFLELI FYK LL  +  E+  NI RL  GLQTL +TN DV+ L++ LK K KEVEAKK  T+ LLEEMG QRSEAEAQQ
Sbjct:    1 PKSFLELISFYKSLLNARRNEMFANIKRLDTGLQTLMRTNQDVEQLQEFLKEKKKEVEAKKAATDKLLEEMGKQRSEAEAQQ 82
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A7S1G2N3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2N3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.800e-21
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQ 291
            SQ++LE + RYNY TPKS+LELI FYK LL  K  ++   I RL  G+ TLRKT+ DV+ L+ DL + MK+VE KK  T+ L++EM VQ++ A+ QQ
Sbjct:   43 SQKYLEIQRRYNYVTPKSYLELISFYKYLLSTKKSKVQRLIDRLDVGISTLRKTSTDVEELQKDLTITMKKVEEKKIATDALIQEMSVQQAGAKKQQ 139
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A6A5ADK0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ADK0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.940e-21
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQVK 297
            S +F   +GR+NY TP SFLELI FYK+LL+ K   L G I RL  GL+TL+KT+DDV+ L+ +LK  M++V+ +K GT+ LLE+MG QR++A+ +Q +
Sbjct:  371 SVQFKASQGRFNYVTPTSFLELIVFYKKLLKNKRQSLQGLIKRLDVGLRTLKKTSDDVEALQKELKFTMRKVDDRKKGTDALLEQMGKQRNDAQIKQAR 469
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A3R7BF21_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BF21_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.030e-21
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQVK 297
            S +F   +GR+NY TP SFLELI FYK+LL+ K   L G I RL  GL+TL+KT+DDV+ L+ +LK  M++V+ +K GT+ LLE+MG QR++A+ +Q +
Sbjct: 1367 SVQFKASQGRFNYVTPTSFLELIVFYKKLLKNKRQSLQGLIKRLDVGLRTLKKTSDDVEALQKELKFTMRKVDDRKKGTDALLEQMGKQRNDAQIKQAR 1465
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BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A418FN70_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FN70_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.040e-21
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQVK 297
            S +F   +GR+NY TP SFLELI FYK+LL+ K   L G I RL  GL+TL+KT+DDV+ L+ +LK  M++V+ +K GT+ LLE+MG QR++A+ +Q +
Sbjct: 3142 SVQFKASQGRFNYVTPTSFLELIVFYKKLLKNKRQSLQGLIKRLDVGLRTLKKTSDDVEALQKELKFTMRKVDDRKKGTDALLEQMGKQRNDAQIKQAR 3240
[Close]
BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: W4FC81_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FC81_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.040e-21
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQVK 297
            S +F   +GR+NY TP SFLELI FYK+LL+ K   L G I RL  GL+TL+KT+DDV+ L+ +LK  M++V+ +K GT+ LLE+MG QR++A+ +Q +
Sbjct: 3106 SVQFKASQGRFNYVTPTSFLELIVFYKKLLKNKRQSLQGLIKRLDVGLRTLKKTSDDVEALQKELKFTMRKVDDRKKGTDALLEQMGKQRNDAQIKQAR 3204
[Close]
BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Match: A0A3R7XRM5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XRM5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.040e-21
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQTLRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQVK 297
            S +F   +GR+NY TP SFLELI FYK+LL+ K   L G I RL  GL+TL+KT+DDV+ L+ +LK  M++V+ +K GT+ LLE+MG QR++A+ +Q +
Sbjct: 3142 SVQFKASQGRFNYVTPTSFLELIVFYKKLLKNKRQSLQGLIKRLDVGLRTLKKTSDDVEALQKELKFTMRKVDDRKKGTDALLEQMGKQRNDAQIKQAR 3240
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16815.4579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA64_9PHAE1.620e-4687.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLQ8_ECTSI2.360e-4491.21Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A482SY26_9ARCH1.090e-2663.92Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S3HHQ5_9STRA1.390e-2165.85Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1G2N3_9STRA1.800e-2152.58Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A6A5ADK0_9STRA1.940e-2151.52Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R7BF21_9STRA2.030e-2151.52Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A418FN70_9STRA2.040e-2151.52Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4FC81_9STRA2.040e-2151.52Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A3R7XRM5_9STRA2.040e-2151.52Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16815contigL-elsbetiae_contig16815:597..1739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9.2e-39
Seed eggNOG ortholog2880.D7FLQ8
Preferred nameODA-DHCB
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.1822054-CDS-L-elsbetiae_contig16815:596..7731622815698.1822054-CDS-L-elsbetiae_contig16815:596..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16815 597..773 +
1691683044.980954-CDS-L-elsbetiae_contig16815:596..7731691683044.980954-CDS-L-elsbetiae_contig16815:596..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16815 597..773 +
1622815698.1942866-CDS-L-elsbetiae_contig16815:1607..17391622815698.1942866-CDS-L-elsbetiae_contig16815:1607..1739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16815 1608..1739 +
1691683044.9911726-CDS-L-elsbetiae_contig16815:1607..17391691683044.9911726-CDS-L-elsbetiae_contig16815:1607..1739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16815 1608..1739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16815.4579.1prot_L-elsbetiae_contig16815.4579.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16815 597..1739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16815.4579.1

>prot_L-elsbetiae_contig16815.4579.1 ID=prot_L-elsbetiae_contig16815.4579.1|Name=mRNA_L-elsbetiae_contig16815.4579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
SQRFLEDEGRYNYTTPKSFLELIDFYKELLRKKSGELDGNISRLANGLQT
LRKTNDDVQTLRDDLKLKMKEVEAKKHGTEVLLEEMGVQRSEAEAQQVKK
MQ*
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mRNA from alignment at L-elsbetiae_contig16815:597..1739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16815.4579.1 ID=mRNA_L-elsbetiae_contig16815.4579.1|Name=mRNA_L-elsbetiae_contig16815.4579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1143bp|location=Sequence derived from alignment at L-elsbetiae_contig16815:597..1739+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCAACGATTCCTGGAGGACGAGGGCCGGTACAACTACACCACCCCGAA
GAGCTTCCTCGAGCTCATTGACTTCTACAAAGAGCTGCTGAGGAAGAAGA
GTGGAGAGCTGGACGGCAACATCAGCCGCCTCGCGAACGGCCTGCAGACC
CTCCGGAAGACGAACGACGACGTCCAGGTGAACAGCAGTCCTGCGACCAT
CACACTGCTGTTGTATTGTATCGCAAACTCTCCGAAAAGACAAACGCCGA
CGTCCAAGTGAGATGCGGAACAGCGGCCTCCGCAAGCTTTACTGGGAGAA
ACCATATGGGATATATATAAAGTGTGAAACCGGCTAAATGGGCGTCGGTT
TGGGGTTGGGGTTGAGGTAAGGGTAGGGTTAGGGTTAGGAAACCCCTGCC
TATTATATCCTATCTAGACAGGAATTCTTAGAGAAGAAGGCGGTCCAGTC
AGTGCGTAACAGCAGTTCTGCGACTATCACGTTGCTGTTGCATTGTTTCG
CAAACTCTCCGACGAAACAAACTACGACGCCCAGCTAAGTACGACTGAAT
AGTTGTTGTTCTCACAGCAGTATAGCTGTGCATAACTTCTAGAAGAATAT
CCCCAAAAATACCGGCCCGTGGTTGAAAAAGTGCTGGAGGCCATCAAAAA
ATCGACCCGAAACAACACACACACACACACACAAACGTGCAGTTACAGCA
GCTTCTGCGGCCAACACGCTTTCTTTTGATGGTCTGCAAAATACGTACGA
AGTATTTATTTATTAGTATTTATTTATTTATTTATTTTAGATTGTTTTTT
CTTCACGTTTATTCCGATTTCGAGTGCTTATTAATGTGTGGTGCCGCTTT
TTATTTATTGAAATCACATACGAAGTGTGTATTTATTTATTTATTCATTC
ATTTAGTCTATTCATTTGTTTTATTTTGTCTAATTTTTTCACTTGATTGG
TGGTGCCACTTGTTATTTATTGAAATCAACCACGAGAAACGGTCCGGTGC
CTCCTCCGCAGACCTTGCGGGACGACCTCAAGCTCAAGATGAAGGAGGTC
GAGGCCAAGAAGCACGGCACGGAGGTGCTCCTGGAAGAAATGGGCGTCCA
GCGATCCGAGGCCGAAGCCCAGCAGGTGAAAAAGATGCAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16815:597..1739+

>mRNA_L-elsbetiae_contig16815.4579.1 ID=mRNA_L-elsbetiae_contig16815.4579.1|Name=mRNA_L-elsbetiae_contig16815.4579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig16815:597..1739+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCAACGATTCCTGGAGGACGAGGGCCGGTACAACTACACCACCCCGAA
GAGCTTCCTCGAGCTCATTGACTTCTACAAAGAGCTGCTGAGGAAGAAGA
GTGGAGAGCTGGACGGCAACATCAGCCGCCTCGCGAACGGCCTGCAGACC
CTCCGGAAGACGAACGACGACGTCCAGTCTCAACGATTCCTGGAGGACGA
GGGCCGGTACAACTACACCACCCCGAAGAGCTTCCTCGAGCTCATTGACT
TCTACAAAGAGCTGCTGAGGAAGAAGAGTGGAGAGCTGGACGGCAACATC
AGCCGCCTCGCGAACGGCCTGCAGACCCTCCGGAAGACGAACGACGACGT
CCAGACCTTGCGGGACGACCTCAAGCTCAAGATGAAGGAGGTCGAGGCCA
AGAAGCACGGCACGGAGGTGCTCCTGGAAGAAATGGGCGTCCAGCGATCC
GAGGCCGAAGCCCAGCAGGTGAAAAAGATGCAGTAGACCTTGCGGGACGA
CCTCAAGCTCAAGATGAAGGAGGTCGAGGCCAAGAAGCACGGCACGGAGG
TGCTCCTGGAAGAAATGGGCGTCCAGCGATCCGAGGCCGAAGCCCAGCAG
GTGAAAAAGATGCAGTAG
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