mRNA_L-elsbetiae_contig16811.4577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16811.4577.1
Unique NamemRNA_L-elsbetiae_contig16811.4577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16811.4577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16811contigL-elsbetiae_contig16811:554..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.0391905-CDS-L-elsbetiae_contig16811:553..8831622815698.0391905-CDS-L-elsbetiae_contig16811:553..883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16811 554..883 +
1691683044.9103422-CDS-L-elsbetiae_contig16811:553..8831691683044.9103422-CDS-L-elsbetiae_contig16811:553..883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16811 554..883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.0557117-UTR-L-elsbetiae_contig16811:883..9681622815698.0557117-UTR-L-elsbetiae_contig16811:883..968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 884..968 +
1691683044.9231782-UTR-L-elsbetiae_contig16811:883..9681691683044.9231782-UTR-L-elsbetiae_contig16811:883..968Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16811 884..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16811.4577.1prot_L-elsbetiae_contig16811.4577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16811 554..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16811.4577.1

>prot_L-elsbetiae_contig16811.4577.1 ID=prot_L-elsbetiae_contig16811.4577.1|Name=mRNA_L-elsbetiae_contig16811.4577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
SAKHKKRISDTDSLEPSPLPSSRYVCEVKTKVDKPTSPTAGDNTSWFYLG
TPTLPGCSAPGSRRSGQAHQSSPPNPLYRTHDTERGKRISDSEQAESTNK
QTTQHNRHT*
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mRNA from alignment at L-elsbetiae_contig16811:554..968+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16811.4577.1 ID=mRNA_L-elsbetiae_contig16811.4577.1|Name=mRNA_L-elsbetiae_contig16811.4577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=415bp|location=Sequence derived from alignment at L-elsbetiae_contig16811:554..968+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCAAAGCACAAAAAACGAATATCGGACACAGATAGTCTGGAGCCTTC
CCCGCTCCCCTCTTCACGCTATGTGTGTGAGGTGAAAACAAAAGTGGACA
AGCCAACATCACCAACCGCGGGGGATAACACCTCCTGGTTCTACCTCGGT
ACCCCAACATTGCCGGGGTGTTCTGCGCCGGGTTCTCGTCGGTCAGGCCA
GGCACACCAATCTAGTCCTCCCAACCCATTGTATCGCACACATGATACAG
AAAGAGGCAAAAGGATATCGGACAGTGAACAAGCCGAAAGTACAAACAAA
CAAACAACCCAACACAACAGACACACATAAAAATGATCACAAGTGAAATT
TAACTCTCGGAAAAATCGGCAACTGTGCCGTGAGTCAACCAACACGGCAG
ACGGCTGCTGCCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16811:554..968+

>mRNA_L-elsbetiae_contig16811.4577.1 ID=mRNA_L-elsbetiae_contig16811.4577.1|Name=mRNA_L-elsbetiae_contig16811.4577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig16811:554..968+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCAAAGCACAAAAAACGAATATCGGACACAGATAGTCTGGAGCCTTC
CCCGCTCCCCTCTTCACGCTATGTGTGTGAGGTGAAAACAAAAGTGGACA
AGCCAACATCACCAACCGCGGGGGATAACACCTCCTGGTTCTACCTCGGT
ACCCCAACATTGCCGGGGTGTTCTGCGCCGGGTTCTCGTCGGTCAGGCCA
GGCACACCAATCTAGTCCTCCCAACCCATTGTATCGCACACATGATACAG
AAAGAGGCAAAAGGATATCGGACAGTGAACAAGCCGAAAGTACAAACAAA
CAAACAACCCAACACAACAGACACACATAATCCGCAAAGCACAAAAAACG
AATATCGGACACAGATAGTCTGGAGCCTTCCCCGCTCCCCTCTTCACGCT
ATGTGTGTGAGGTGAAAACAAAAGTGGACAAGCCAACATCACCAACCGCG
GGGGATAACACCTCCTGGTTCTACCTCGGTACCCCAACATTGCCGGGGTG
TTCTGCGCCGGGTTCTCGTCGGTCAGGCCAGGCACACCAATCTAGTCCTC
CCAACCCATTGTATCGCACACATGATACAGAAAGAGGCAAAAGGATATCG
GACAGTGAACAAGCCGAAAGTACAAACAAACAAACAACCCAACACAACAG
ACACACATAA
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