mRNA_L-elsbetiae_contig168.4571.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig168.4571.1
Unique NamemRNA_L-elsbetiae_contig168.4571.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig168.4571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig168contigL-elsbetiae_contig168:16142..16718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size577
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig168.4571.1prot_L-elsbetiae_contig168.4571.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig168 16222..16542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.381435-UTR-L-elsbetiae_contig168:16141..162211622815697.381435-UTR-L-elsbetiae_contig168:16141..16221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 16142..16221 +
1691683044.470845-UTR-L-elsbetiae_contig168:16141..162211691683044.470845-UTR-L-elsbetiae_contig168:16141..16221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 16142..16221 +
1622815697.400953-UTR-L-elsbetiae_contig168:16542..167181622815697.400953-UTR-L-elsbetiae_contig168:16542..16718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 16543..16718 +
1691683044.4902039-UTR-L-elsbetiae_contig168:16542..167181691683044.4902039-UTR-L-elsbetiae_contig168:16542..16718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig168 16543..16718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.391392-CDS-L-elsbetiae_contig168:16221..165421622815697.391392-CDS-L-elsbetiae_contig168:16221..16542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 16222..16542 +
1691683044.4808052-CDS-L-elsbetiae_contig168:16221..165421691683044.4808052-CDS-L-elsbetiae_contig168:16221..16542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig168 16222..16542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig168.4571.1

>prot_L-elsbetiae_contig168.4571.1 ID=prot_L-elsbetiae_contig168.4571.1|Name=mRNA_L-elsbetiae_contig168.4571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MAPVGGVDSVRFMRMNLDSCWCREKLCKLRRKSDSYHYVLTLPLEVQTTP
FSSLIVWAGTHFPTSPRFRRELIPRTPLPMDDTNPPHDTIRIRRRFGSNL
NGQAGT*
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mRNA from alignment at L-elsbetiae_contig168:16142..16718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig168.4571.1 ID=mRNA_L-elsbetiae_contig168.4571.1|Name=mRNA_L-elsbetiae_contig168.4571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=577bp|location=Sequence derived from alignment at L-elsbetiae_contig168:16142..16718+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCACAAGGGTGTCGTCCTGCCAGAGAATCTCGCTCGCACCCTTTGTTT
TTGCTCTTTATACGCGAGGGTGGTAGCGTAATGGCACCCGTCGGAGGTGT
CGACTCTGTGCGGTTTATGAGAATGAACCTCGATTCCTGCTGGTGCCGTG
AAAAGCTGTGTAAACTGCGACGAAAATCAGACTCCTACCACTACGTGTTG
ACACTACCATTGGAAGTACAGACAACACCTTTCTCATCACTAATCGTTTG
GGCTGGGACTCATTTCCCGACCTCGCCCCGCTTCCGAAGAGAATTGATTC
CCCGAACGCCGCTCCCGATGGATGACACAAACCCACCACACGATACCATC
AGAATTCGCCGGAGGTTTGGCTCAAACTTGAACGGGCAGGCCGGGACCTA
AAATACGTATTTCAGTACTCCGGCAAAACGCGGATCTATCTAGAAAGCAA
TCATTGATTTTGACGAGAGACCGTTTGACAAAACAAATCAAGCACCCAGT
CAAGCAGCAAGACCACTGGACAACGTAAAAAACGGACAATGCTGTTGAAA
GCCCTTTTGAAAGCAGGCATCAAAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig168:16142..16718+

>mRNA_L-elsbetiae_contig168.4571.1 ID=mRNA_L-elsbetiae_contig168.4571.1|Name=mRNA_L-elsbetiae_contig168.4571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig168:16142..16718+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACCCGTCGGAGGTGTCGACTCTGTGCGGTTTATGAGAATGAACCT
CGATTCCTGCTGGTGCCGTGAAAAGCTGTGTAAACTGCGACGAAAATCAG
ACTCCTACCACTACGTGTTGACACTACCATTGGAAGTACAGACAACACCT
TTCTCATCACTAATCGTTTGGGCTGGGACTCATTTCCCGACCTCGCCCCG
CTTCCGAAGAGAATTGATTCCCCGAACGCCGCTCCCGATGGATGACACAA
ACCCACCACACGATACCATCAGAATTCGCCGGAGGTTTGGCTCAAACTTG
AACGGGCAGGCCGGGACCTAAATGGCACCCGTCGGAGGTGTCGACTCTGT
GCGGTTTATGAGAATGAACCTCGATTCCTGCTGGTGCCGTGAAAAGCTGT
GTAAACTGCGACGAAAATCAGACTCCTACCACTACGTGTTGACACTACCA
TTGGAAGTACAGACAACACCTTTCTCATCACTAATCGTTTGGGCTGGGAC
TCATTTCCCGACCTCGCCCCGCTTCCGAAGAGAATTGATTCCCCGAACGC
CGCTCCCGATGGATGACACAAACCCACCACACGATACCATCAGAATTCGC
CGGAGGTTTGGCTCAAACTTGAACGGGCAGGCCGGGACCTAA
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