mRNA_L-elsbetiae_contig1679.4567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1679.4567.1
Unique NamemRNA_L-elsbetiae_contig1679.4567.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 8.540e-28
Identity = 94/126 (74.60%), Postives = 99/126 (78.57%), Query Frame = 1 
Query:    1 GGAGVVPTGHAMLKSRLTSVSLRGLVQVDGKAVAAMAVACSGSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAISRY 378
            G  G    GH MLKSRLT VSLRGL QVD KAV AMA ACSGSLR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +DGLGHLVDS   L+SL LWGC QVTDRFL+GH++EEL ISRY
Sbjct:  645 GDGGGARKGHTMLKSRLTRVSLRGLAQVDDKAVEAMAAACSGSLRSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFCRSATEDGLGHLVDSCDGLRSLCLWGCMQVTDRFLRGHTKEELVISRY 770
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: R1FM25_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FM25_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 6.180e-8
Identity = 22/40 (55.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAI 369
            D+G+G LVD++P L+ L +WGC+Q+T+RF +GHSRE L +
Sbjct:   96 DNGVGALVDAAPRLQRLTVWGCSQLTNRFYEGHSREHLRV 135
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: A0A7S3T5Y3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T5Y3_EMIHU)

HSP 1 Score: 57.8 bits (138), Expect = 4.430e-7
Identity = 22/40 (55.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAI 369
            D+G+G LVD++P L+ L +WGC+Q+T+RF +GHSRE L +
Sbjct:  518 DNGVGALVDAAPRLQRLTVWGCSQLTNRFYEGHSREHLRV 557
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: A0A804LVT1_MAIZE (Uncharacterized protein n=4 Tax=Zea mays TaxID=4577 RepID=A0A804LVT1_MAIZE)

HSP 1 Score: 57.0 bits (136), Expect = 8.660e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAI 369
            DD LG +VDS P+L+ L+L+GCTQVTD FLKGHS   + I
Sbjct:  809 DDSLGLIVDSCPSLRILKLFGCTQVTDLFLKGHSNTSVEI 848
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: A0A317YFM8_MAIZE (Two-component response regulator ORR31 n=1 Tax=Zea mays TaxID=4577 RepID=A0A317YFM8_MAIZE)

HSP 1 Score: 57.0 bits (136), Expect = 8.840e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAI 369
            DD LG +VDS P+L+ L+L+GCTQVTD FLKGHS   + I
Sbjct:  493 DDSLGLIVDSCPSLRILKLFGCTQVTDLFLKGHSNTSVEI 532
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: D0MUG6_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MUG6_PHYIT)

HSP 1 Score: 55.5 bits (132), Expect = 2.770e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAIS 372
            +D LG L D + NL+SL LWGCTQVT RFL  HS++EL ++
Sbjct:  440 EDALGILADGTENLRSLVLWGCTQVTARFLTCHSQDELIVT 480
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: K7UTY8_MAIZE (Uncharacterized protein n=3 Tax=Zea mays TaxID=4577 RepID=K7UTY8_MAIZE)

HSP 1 Score: 55.5 bits (132), Expect = 2.990e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAI 369
            D+ LG +VDS P+L+ L+L+GCTQVTD FLKGHS   + I
Sbjct:  850 DEALGLIVDSCPSLRILKLFGCTQVTDLFLKGHSNTSVKI 889
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: A0A1B6PI41_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6PI41_SORBI)

HSP 1 Score: 55.5 bits (132), Expect = 2.990e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAI 369
            D+ LG +VDS P+L+ L+L+GCTQVTD FLKGHS   + I
Sbjct:  854 DEALGLIVDSCPSLRILKLFGCTQVTDLFLKGHSNTSVKI 893
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: A0A0W8D419_PHYNI (Myb-related protein B n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D419_PHYNI)

HSP 1 Score: 55.5 bits (132), Expect = 3.020e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAIS 372
            +D LG L D + NL+SL LWGCTQVT RFL  HS+++L +S
Sbjct:  471 EDALGILADGTENLRSLVLWGCTQVTARFLTCHSQDDLIVS 511
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BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Match: A0A5B6UMA7_9ROSI (F-box/LRR-repeat protein 4 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UMA7_9ROSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.550e-6
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  250 DDGLGHLVDSSPNLKSLRLWGCTQVTDRFLKGHSREELAI 369
            D+ LG +VDS  +LK L+L+GCTQ+TD FLKGHS  ++ I
Sbjct:   41 DEALGLVVDSCSSLKLLKLFGCTQITDVFLKGHSNPQVQI 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1679.4567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHT5_ECTSI8.540e-2874.60Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
R1FM25_EMIHU6.180e-855.00Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3T5Y3_EMIHU4.430e-755.00Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A804LVT1_MAIZE8.660e-762.50Uncharacterized protein n=4 Tax=Zea mays TaxID=457... [more]
A0A317YFM8_MAIZE8.840e-762.50Two-component response regulator ORR31 n=1 Tax=Zea... [more]
D0MUG6_PHYIT2.770e-658.54Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
K7UTY8_MAIZE2.990e-660.00Uncharacterized protein n=3 Tax=Zea mays TaxID=457... [more]
A0A1B6PI41_SORBI2.990e-660.00Uncharacterized protein n=3 Tax=Andropogoneae TaxI... [more]
A0A0W8D419_PHYNI3.020e-658.54Myb-related protein B n=1 Tax=Phytophthora nicotia... [more]
A0A5B6UMA7_9ROSI5.550e-657.50F-box/LRR-repeat protein 4 n=1 Tax=Gossypium austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1679contigL-elsbetiae_contig1679:13231..15205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D8LHT5
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K10272,ko:K15082
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGsKOG1947@1,KOG1947@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-18_000380.1
EC1.4.3.21
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Exons3
Model size406
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1679.4567.1prot_L-elsbetiae_contig1679.4567.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1679 13256..15172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.1958482-UTR-L-elsbetiae_contig1679:13230..132551622815697.1958482-UTR-L-elsbetiae_contig1679:13230..13255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1679 13231..13255 -
1691683044.368892-UTR-L-elsbetiae_contig1679:13230..132551691683044.368892-UTR-L-elsbetiae_contig1679:13230..13255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1679 13231..13255 -
1622815697.260795-UTR-L-elsbetiae_contig1679:15172..152051622815697.260795-UTR-L-elsbetiae_contig1679:15172..15205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1679 15173..15205 -
1691683044.417528-UTR-L-elsbetiae_contig1679:15172..152051691683044.417528-UTR-L-elsbetiae_contig1679:15172..15205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1679 15173..15205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.2118688-CDS-L-elsbetiae_contig1679:13255..134561622815697.2118688-CDS-L-elsbetiae_contig1679:13255..13456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1679 13256..13456 -
1691683044.3868456-CDS-L-elsbetiae_contig1679:13255..134561691683044.3868456-CDS-L-elsbetiae_contig1679:13255..13456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1679 13256..13456 -
1622815697.228218-CDS-L-elsbetiae_contig1679:14559..146371622815697.228218-CDS-L-elsbetiae_contig1679:14559..14637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1679 14560..14637 -
1691683044.396238-CDS-L-elsbetiae_contig1679:14559..146371691683044.396238-CDS-L-elsbetiae_contig1679:14559..14637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1679 14560..14637 -
1622815697.244653-CDS-L-elsbetiae_contig1679:15103..151721622815697.244653-CDS-L-elsbetiae_contig1679:15103..15172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1679 15104..15172 -
1691683044.408277-CDS-L-elsbetiae_contig1679:15103..151721691683044.408277-CDS-L-elsbetiae_contig1679:15103..15172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1679 15104..15172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1679.4567.1

>prot_L-elsbetiae_contig1679.4567.1 ID=prot_L-elsbetiae_contig1679.4567.1|Name=mRNA_L-elsbetiae_contig1679.4567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MLKSRLTSVSLRGLVQVDGKAVAAMAVACSGSLRSLDLKGLALVTDITMV
ALARYCSSSLESLDLSFCRAVTDDGLGHLVDSSPNLKSLRLWGCTQVTDR
FLKGHSREELAISRY*
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mRNA from alignment at L-elsbetiae_contig1679:13231..15205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1679.4567.1 ID=mRNA_L-elsbetiae_contig1679.4567.1|Name=mRNA_L-elsbetiae_contig1679.4567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1975bp|location=Sequence derived from alignment at L-elsbetiae_contig1679:13231..15205- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGGCAGGGGTGGTGCCGACGGGCCACGCGATGCTCAAGTCCCGGCT
AACGAGCGTCTCGCTCCGAGGGTTGGTGCAGGTGGACGGCAAGGCCGTGG
CGGTGAGAGAGACGATTTATCCCCCTCCCTCCCCCTCCCTCCGAGAATTG
GCTTGCAGCCCGAGTGCGTTGTCCGCCGCCACAAGTTTCACGGCTGGCGC
ATGTTGCTGCCATCTGCGCCTCTAGTTGAGCTCTATATTTTTGTCTTTTT
CGTTTGTGAGAGGGGGCAGAATGCAGTAGCCGCTTGGCTGATGAGAAGCT
ATCAGGATCGCCGTTGGCTTGTACGAGCCTTTTTTTTTTTTATGTTGCGG
CATGCATGGCATCGGAAACACAGCAAGTTACGCCAGTTGGATAGAATCGG
GGCATAAAAAGCAGCCCACCTCGGAGATAATTTCACGGTCGGCTCTTTAT
ACAGATGCATGAACTACGAAGCAGACAGAGTACACCTGTTGCCCCCCTCT
CCACGTCCGAGATCACGGGGTTCTGTAACAAGTTTGCCCTGTTTGTCTTC
GGCGCTTGTGTCTCGAAGGCAATGGCGGTCGCGTGTTCCGGCAGTCTTCG
CTCCCTGGACCTGAAGGGGCTGGCTCTTGTGACGGACATCACCATGGTAA
GACACGCTGTAATGGAGATCAAAGTTGTGCCAAATGATTTTCTAGCTCTC
CAGCACTCTCCGTGCGCAAGACGGCGGGGGTGACGGAACGCGTGCTTGCA
GCAGAGTCGGCGTTTCTCAGCCATGCTGTGCTTCCTTACCTCTCCCCTGG
TTATTTCTCCGGGCCGCTCCTGGTTTGGTCGTTTGTTCGGGCTGTTTCGG
TAGCTGGCGGCGGCGGCGGCAGCAGCGGCAGCATCTTCAGCAGCGGCAGC
GGGGTCTGATGTAAAAAAAGAAGAAGCAAAAAATGCGCTTTTTGCTCTCT
GACGTCTTGGTCTGCACCGCCCTAACGGAGGCCGTGATGCCTGTCGCCCT
AAATGTCGCTGCCCGCTTTTTTGATGGCGCACATGATGGTTGTGAGCCTT
CTGCGGCACGTCGTGTGTTGAGCACAGCAGTGTGTTGCTCTCTACCAAAC
TGCCAAGTGTATAGTTTGTGTGCATACATACACGAAGCGCAAACGTGCCG
AGACCCTGCAGCAATAACCTACCGTAGGTGACACAAGATACCACACCCCC
TGGACAGATTTTCGAAGCTCGGTTCTTCCCCAGCAAGAAGATCGCCAGTG
CCAAAAGGGGTAGCTTTGGAAAGATCTAGCCGAGGGCTGTCCGAAAATGT
TTCGTTTGGTGCTGGCACCTTCTTCGTTACGTCGTAACGGAGCTCTAAAA
TTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAAACCGGGCAC
GTGCCATTATCTCTCCAAGAAACCCTCGACGTTTCGCAATGCACAGACAC
GCACTTCGCATAGACGCATTTCCCGCCCGTGCAGACTCCCCATTTCACGA
CTACCACACTAACCCCCCCCCCGCCTGGCTTTCTAGGGAGGTGTTTCACC
CGGCTTTCTAGGGAGGTGGTCTGTGGTCTGTACAAGCATTTTGGTACGGC
GTGCGGAAGATCGAAGACCGCACGCCGGCCGGTGAATAATTTAGCCGTAT
TCTCCTAGAGAAAGGCAACCAGCGACGAGTCCGCCCCGCCCTTCCCCCCG
CCGCCTTGCATCGAATCAACCGCGGTGCCCCCTCCGGCAACGCCCACAGG
TGGCGCTCGCGCGGTACTGCTCGTCCTCTCTGGAGTCGCTGGACCTGTCT
TTCTGCAGGGCCGTCACCGATGACGGGCTGGGGCACCTCGTAGACTCCTC
CCCGAACCTCAAGTCTCTTCGGCTCTGGGGGTGCACGCAGGTCACGGACC
GCTTCCTCAAGGGGCACAGCAGAGAGGAGCTCGCCATCTCGCGGTACTGA
GAGGGCCGGCCGTCTTCTTTTCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1679:13231..15205-

>mRNA_L-elsbetiae_contig1679.4567.1 ID=mRNA_L-elsbetiae_contig1679.4567.1|Name=mRNA_L-elsbetiae_contig1679.4567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig1679:13231..15205- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAAGTCCCGGCTAACGAGCGTCTCGCTCCGAGGGTTGGTGCAGGT
GGACGGCAAGGCCGTGGCGATGCTCAAGTCCCGGCTAACGAGCGTCTCGC
TCCGAGGGTTGGTGCAGGTGGACGGCAAGGCCGTGGCGGCAATGGCGGTC
GCGTGTTCCGGCAGTCTTCGCTCCCTGGACCTGAAGGGGCTGGCTCTTGT
GACGGACATCACCATGGCAATGGCGGTCGCGTGTTCCGGCAGTCTTCGCT
CCCTGGACCTGAAGGGGCTGGCTCTTGTGACGGACATCACCATGGTGGCG
CTCGCGCGGTACTGCTCGTCCTCTCTGGAGTCGCTGGACCTGTCTTTCTG
CAGGGCCGTCACCGATGACGGGCTGGGGCACCTCGTAGACTCCTCCCCGA
ACCTCAAGTCTCTTCGGCTCTGGGGGTGCACGCAGGTCACGGACCGCTTC
CTCAAGGGGCACAGCAGAGAGGAGCTCGCCATCTCGCGGTACTGAGTGGC
GCTCGCGCGGTACTGCTCGTCCTCTCTGGAGTCGCTGGACCTGTCTTTCT
GCAGGGCCGTCACCGATGACGGGCTGGGGCACCTCGTAGACTCCTCCCCG
AACCTCAAGTCTCTTCGGCTCTGGGGGTGCACGCAGGTCACGGACCGCTT
CCTCAAGGGGCACAGCAGAGAGGAGCTCGCCATCTCGCGGTACTGA
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