mRNA_L-elsbetiae_contig16780.4565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16780.4565.1
Unique NamemRNA_L-elsbetiae_contig16780.4565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16780.4565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16780contigL-elsbetiae_contig16780:1197..2275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size677
Cds size393
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16780.4565.1prot_L-elsbetiae_contig16780.4565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16780 1479..2275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.0019763-UTR-L-elsbetiae_contig16780:1196..14781622815697.0019763-UTR-L-elsbetiae_contig16780:1196..1478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16780 1197..1478 -
1691683044.2530217-UTR-L-elsbetiae_contig16780:1196..14781691683044.2530217-UTR-L-elsbetiae_contig16780:1196..1478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16780 1197..1478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.0184147-CDS-L-elsbetiae_contig16780:1478..16151622815697.0184147-CDS-L-elsbetiae_contig16780:1478..1615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 1479..1615 -
1691683044.2699456-CDS-L-elsbetiae_contig16780:1478..16151691683044.2699456-CDS-L-elsbetiae_contig16780:1478..1615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 1479..1615 -
1622815697.0318744-CDS-L-elsbetiae_contig16780:2019..22751622815697.0318744-CDS-L-elsbetiae_contig16780:2019..2275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 2020..2275 -
1691683044.2813244-CDS-L-elsbetiae_contig16780:2019..22751691683044.2813244-CDS-L-elsbetiae_contig16780:2019..2275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 2020..2275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16780.4565.1

>prot_L-elsbetiae_contig16780.4565.1 ID=prot_L-elsbetiae_contig16780.4565.1|Name=mRNA_L-elsbetiae_contig16780.4565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
ESVGRVLHLWLPIAHLQGLNFVLGLWGWPNLNKHKFNELAMRIATTCFRA
KGAACGAVLLLISTVWAVEAHQTPHGRSVCWATRAVAGPRKPRPGRDRQV
LSWPSASSTTTTTMVAASPNKARRKENVPG*
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mRNA from alignment at L-elsbetiae_contig16780:1197..2275-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16780.4565.1 ID=mRNA_L-elsbetiae_contig16780.4565.1|Name=mRNA_L-elsbetiae_contig16780.4565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1079bp|location=Sequence derived from alignment at L-elsbetiae_contig16780:1197..2275- (Laminarionema elsbetiae ELsaHSoW15)
GAGTCGGTTGGGCGTGTGCTTCACCTCTGGCTTCCTATCGCTCACCTTCA
GGGATTGAACTTTGTTCTGGGGTTGTGGGGCTGGCCCAATTTGAACAAGC
ACAAGTTCAACGAACTGGCAATGAGAATCGCAACAACATGCTTTCGCGCG
AAGGGAGCTGCGTGTGGTGCTGTTCTCCTCCTTATCTCCACGGTTTGGGC
CGTAGAAGCTCACCAAACACCACATGGTAGAAGCGTGTGTTGGGCCACCC
GAGCAGGTGTGTGTCCAAAAGGCCGCCAAAAAGGTGCGAGCACGAACAAC
GGCGGAGAGATTCAGAATTCAGTTGTTCCGCAGTTTTTCGTTTTACCCCG
CCGAGGGCCGAGGTTTGTTGCAACTCTTCAACTCTTGTTCCTTGTTCCTT
GTGGCTTGGTTGTGCAAATATGGGGCTACCCGCAGGCGTTGCCATAGATG
CATTCATATCGTTTATTAACACCGAACTAGCTAGCTACGTCGTTCCTGTT
GGTGCACATTATTTTGTATTCTTCCGCGCGGGGGGGGGTTAGATACCAAA
GAACGGAAAAGAAAAAAGCAGAAAAGCAAGCAGACCTTGTCTACATTCTT
ATCTACAGACAGATAACTAATTTTTCCTAGATGCCTCGTTTTGTGGTCGA
TTGACATCAGTCGCCGGTCCCAGAAAGCCGCGGCCGGGGCGGGACCGACA
AGTGCTGTCGTGGCCGTCAGCATCCTCGACCACGACCACGACCATGGTGG
CTGCGAGCCCGAACAAGGCCAGGAGGAAAGAGAACGTGCCAGGGTGAGGA
GAAGGAGCGGTGCCTGACGCGGCCTATCAACTGTGTTATCACGCCCGCCG
TACACACGGCCGTGTCCGAAAAAATCCCTCCATGCTTTGGCGTGGTCGAC
ACAATAGTTGGTGTGTGTGTTTGGCCGTGAGCTGGTCTTTGCCCGGGTGG
TTTGTACTCTACATACATACGTCGTTTAGAGAGACAGGTCCGGTGTCCTC
TACGTAGACTTTTTTGACCAGCCCCTGTTTGCACGGACATAAGTTTACGT
ATTCACGCTGCAGCTCTTGGCTCCTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16780:1197..2275-

>mRNA_L-elsbetiae_contig16780.4565.1 ID=mRNA_L-elsbetiae_contig16780.4565.1|Name=mRNA_L-elsbetiae_contig16780.4565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig16780:1197..2275- (Laminarionema elsbetiae ELsaHSoW15)
GAGTCGGTTGGGCGTGTGCTTCACCTCTGGCTTCCTATCGCTCACCTTCA
GGGATTGAACTTTGTTCTGGGGTTGTGGGGCTGGCCCAATTTGAACAAGC
ACAAGTTCAACGAACTGGCAATGAGAATCGCAACAACATGCTTTCGCGCG
AAGGGAGCTGCGTGTGGTGCTGTTCTCCTCCTTATCTCCACGGTTTGGGC
CGTAGAAGCTCACCAAACACCACATGGTAGAAGCGTGTGTTGGGCCACCC
GAGCAGGAGTCGGTTGGGCGTGTGCTTCACCTCTGGCTTCCTATCGCTCA
CCTTCAGGGATTGAACTTTGTTCTGGGGTTGTGGGGCTGGCCCAATTTGA
ACAAGCACAAGTTCAACGAACTGGCAATGAGAATCGCAACAACATGCTTT
CGCGCGAAGGGAGCTGCGTGTGGTGCTGTTCTCCTCCTTATCTCCACGGT
TTGGGCCGTAGAAGCTCACCAAACACCACATGGTAGAAGCGTGTGTTGGG
CCACCCGAGCAGTCGCCGGTCCCAGAAAGCCGCGGCCGGGGCGGGACCGA
CAAGTGCTGTCGTGGCCGTCAGCATCCTCGACCACGACCACGACCATGGT
GGCTGCGAGCCCGAACAAGGCCAGGAGGAAAGAGAACGTGCCAGGGTGAT
CGCCGGTCCCAGAAAGCCGCGGCCGGGGCGGGACCGACAAGTGCTGTCGT
GGCCGTCAGCATCCTCGACCACGACCACGACCATGGTGGCTGCGAGCCCG
AACAAGGCCAGGAGGAAAGAGAACGTGCCAGGGTGA
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