mRNA_L-elsbetiae_contig16780.4564.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16780.4564.1
Unique NamemRNA_L-elsbetiae_contig16780.4564.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: D7FIS6_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.070e-30
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1
Query:   64 MQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            MQG+TF HK GKSAVVRQP TEEE+RGAYRAM ACPT SIR+E +DP+ARDALKDFPFPVD +RLPG+
Sbjct:    1 MQGETFAHKSGKSAVVRQPETEEERRGAYRAMHACPTSSIRVEASDPIARDALKDFPFPVDSERLPGV 68          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: A0A835Z392_9STRA (4Fe-4S single cluster domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z392_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.570e-26
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    4 NCRRNLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            N   NLFVDE+CIDCDTCRWM    +  ++ +S V++QP  E+E+R AYRAM++CPT SIRLE  D L +DA  DFPFPV+   LPG+
Sbjct:   57 NVEGNLFVDESCIDCDTCRWMAPGIYGRENSQSNVIKQPEGEQERREAYRAMVSCPTGSIRLEQPDALVKDARNDFPFPVE--GLPGV 142          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: A0A1Y1IAW0_KLENI (Metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAW0_KLENI)

HSP 1 Score: 104 bits (260), Expect = 8.510e-25
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    4 NCRRNLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            N   + FVD TCIDCDTCRWM  +TF H +G+SAV RQP T +E+  A +A+LACPT SIR ET     +DA   FP  +DP+ LPG+
Sbjct:  103 NVEGDFFVDHTCIDCDTCRWMAPETFSHLNGQSAVHRQPQTPDERTRALQALLACPTASIRTETPPKDIKDAQNTFPLAIDPETLPGV 190          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: A0A067JL29_JATCU (Lactamase_B domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JL29_JATCU)

HSP 1 Score: 99.0 bits (245), Expect = 5.930e-23
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    4 NCRRNLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            N   + FVD TCIDCDTCRWM    F   D KSAV +QP T EE+  A +A+L+CPT+SIR E   P    A K FP P+D  ++PG+
Sbjct:   43 NVEGDFFVDHTCIDCDTCRWMAPQIFTRIDAKSAVFKQPSTNEERLVALQALLSCPTNSIRTEKPAPDVLQAQKTFPMPIDEQKIPGV 130          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: R0GJ75_9BRAS (Lactamase_B domain-containing protein n=5 Tax=Camelineae TaxID=980083 RepID=R0GJ75_9BRAS)

HSP 1 Score: 99.0 bits (245), Expect = 8.450e-23
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    4 NCRRNLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            N   ++FVD TCIDCDTCRWM  + F  KD  SAV++QP  +EE+  A +A+L+CPT SIR ET      +A   FP  VD D LPG+
Sbjct:   61 NVEGDIFVDNTCIDCDTCRWMVPEVFTRKDNMSAVIKQPTCKEERLNALQALLSCPTGSIRTETPPTDIGEAQDSFPLAVDKDTLPGV 148          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: UPI00053C1A11 (uncharacterized protein LOC104807169 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1A11)

HSP 1 Score: 97.4 bits (241), Expect = 2.930e-22
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   16 NLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            +LFVD +CIDCDTCRWM  + F   DG SAV++QP  +EE+  A +A+++CPT SIR ET       A   FP PVD +RLPGI
Sbjct:   67 DLFVDNSCIDCDTCRWMAPEVFTRVDGMSAVIKQPSCKEERLNALQALVSCPTGSIRTETPPTDILRAQDTFPVPVDEERLPGI 150          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: A0A0D3A277_BRAOL (Lactamase_B domain-containing protein n=8 Tax=Brassiceae TaxID=981071 RepID=A0A0D3A277_BRAOL)

HSP 1 Score: 97.4 bits (241), Expect = 3.080e-22
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 NCRRNLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            N   +++VD TCIDCDTCRWM  + F   D  SAVV+QP  +EE+  A +A+L+CPT SIR ET     R+A + FP  +D D+LPG+
Sbjct:   58 NVEGDIYVDSTCIDCDTCRWMVPEVFNRVDNMSAVVKQPTCKEERLNALQALLSCPTGSIRTETPPTDIREAQETFPLTLDQDKLPGV 145          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: A0A5J4ZJ65_9ASTE (Lactamase_B domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZJ65_9ASTE)

HSP 1 Score: 97.1 bits (240), Expect = 3.850e-22
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   16 NLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            +LFVD TCIDCDTCRWM  +TF   DG SAV +QP  EEE+  A +A+L+CPT+SI  E       D  K FP P++  R+PG+
Sbjct:   66 DLFVDHTCIDCDTCRWMAPETFTKVDGMSAVFKQPNYEEERLKALQALLSCPTNSIHTEKPPDGILDVQKTFPIPINEQRIPGV 149          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: A0A1R3GLX0_COCAP (CASP-like protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GLX0_COCAP)

HSP 1 Score: 97.4 bits (241), Expect = 8.640e-22
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   16 NLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            ++FVD TCIDCDTCRWM    F   DG SAV +QP  EE++  A +A+L+CPT SIR E       DA K FP P+D  +LPG+
Sbjct:   72 DIFVDHTCIDCDTCRWMAPQVFTRVDGMSAVSKQPTCEEDRLKALQALLSCPTGSIRTEEPPADILDAQKTFPIPIDEKKLPGV 155          
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Match: A0A1R3GM35_COCAP (Beta-lactamase-like protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GM35_COCAP)

HSP 1 Score: 96.3 bits (238), Expect = 9.020e-22
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   16 NLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAYRAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI 267
            + FVD TCIDCDTCRWM    F   DG SAV +QP  +E++  A +A+L+CPT SIR E   P   +  K FP P+D  +LPG+
Sbjct:   69 DFFVDHTCIDCDTCRWMAPQVFTRVDGMSAVYKQPTCKEDRLKALQALLSCPTSSIRTEVPPPDILETQKTFPIPIDEKKLPGV 152          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16780.4564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIS6_ECTSI3.070e-3079.41Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A835Z392_9STRA2.570e-2656.824Fe-4S single cluster domain-containing protein n=... [more]
A0A1Y1IAW0_KLENI8.510e-2554.55Metallo-beta-lactamase family protein n=1 Tax=Kleb... [more]
A0A067JL29_JATCU5.930e-2351.14Lactamase_B domain-containing protein n=1 Tax=Jatr... [more]
R0GJ75_9BRAS8.450e-2351.14Lactamase_B domain-containing protein n=5 Tax=Came... [more]
UPI00053C1A112.930e-2253.57uncharacterized protein LOC104807169 isoform X1 n=... [more]
A0A0D3A277_BRAOL3.080e-2250.00Lactamase_B domain-containing protein n=8 Tax=Bras... [more]
A0A5J4ZJ65_9ASTE3.850e-2252.38Lactamase_B domain-containing protein n=1 Tax=Nyss... [more]
A0A1R3GLX0_COCAP8.640e-2252.38CASP-like protein n=2 Tax=Corchorus TaxID=93758 Re... [more]
A0A1R3GM35_COCAP9.020e-2250.00Beta-lactamase-like protein n=2 Tax=Corchorus TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16780contigL-elsbetiae_contig16780:344..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue4.2e-24
Seed eggNOG ortholog2880.D7FIS6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.4Fe-4S single cluster domain of Ferredoxin I
EggNOG OGs2QPS3@2759,COG0491@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.0634198-CDS-L-elsbetiae_contig16780:343..4811622815697.0634198-CDS-L-elsbetiae_contig16780:343..481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 344..481 -
1691683044.2899506-CDS-L-elsbetiae_contig16780:343..4811691683044.2899506-CDS-L-elsbetiae_contig16780:343..481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 344..481 -
1622815697.076502-CDS-L-elsbetiae_contig16780:731..8601622815697.076502-CDS-L-elsbetiae_contig16780:731..860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 732..860 -
1691683044.3006394-CDS-L-elsbetiae_contig16780:731..8601691683044.3006394-CDS-L-elsbetiae_contig16780:731..860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16780 732..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16780.4564.1prot_L-elsbetiae_contig16780.4564.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16780 344..860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16780.4564.1

>prot_L-elsbetiae_contig16780.4564.1 ID=prot_L-elsbetiae_contig16780.4564.1|Name=mRNA_L-elsbetiae_contig16780.4564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MNCRRNLFVDETCIDCDTCRWMQGDTFVHKDGKSAVVRQPVTEEEKRGAY
RAMLACPTHSIRLETADPLARDALKDFPFPVDPDRLPGI
back to top

mRNA from alignment at L-elsbetiae_contig16780:344..860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16780.4564.1 ID=mRNA_L-elsbetiae_contig16780.4564.1|Name=mRNA_L-elsbetiae_contig16780.4564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=517bp|location=Sequence derived from alignment at L-elsbetiae_contig16780:344..860- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTGTCGCAGGAACTTATTCGTGGACGAGACATGCATCGATTGCGA CACCTGCAGGTGGATGCAGGGCGACACCTTCGTCCACAAGGACGGAAAAT CGGCCGTCGTCCGGCAGCCCGTGACGGAGGTATCTTGTCTATCTGCGCAC GGACTCGCGGCCCGTTCTTGCAAAGCGTCGTACATACGTATTTGCCGGGC CTTCAAGTCTTTTGGGCGGCAAAAATAAATGAAATGTTGAGACGCTCGCG ATGCCGTCCGTCTCCCGCAACTACATACATAACCCCTCTTGTTTTTGCTC TTCTGGCTGGCCCCACCTCTCCTGGTACAATATTGTGCTCCACTTTTGTG GACGTTCCCGCGGCCGCAAACAAAAAAAGGAGGAGAAGCGAGGCGCGTAC CGAGCGATGCTCGCCTGCCCGACTCACTCGATAAGGCTCGAAACGGCGGA CCCCCTTGCCAGAGATGCCCTGAAGGACTTCCCCTTCCCGGTTGACCCCG ATCGCCTCCCAGGTATA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16780:344..860-

>mRNA_L-elsbetiae_contig16780.4564.1 ID=mRNA_L-elsbetiae_contig16780.4564.1|Name=mRNA_L-elsbetiae_contig16780.4564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig16780:344..860- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTGTCGCAGGAACTTATTCGTGGACGAGACATGCATCGATTGCGA
CACCTGCAGGTGGATGCAGGGCGACACCTTCGTCCACAAGGACGGAAAAT
CGGCCGTCGTCCGGCAGCCCGTGACGGAGATGAACTGTCGCAGGAACTTA
TTCGTGGACGAGACATGCATCGATTGCGACACCTGCAGGTGGATGCAGGG
CGACACCTTCGTCCACAAGGACGGAAAATCGGCCGTCGTCCGGCAGCCCG
TGACGGAGGAGGAGAAGCGAGGCGCGTACCGAGCGATGCTCGCCTGCCCG
ACTCACTCGATAAGGCTCGAAACGGCGGACCCCCTTGCCAGAGATGCCCT
GAAGGACTTCCCCTTCCCGGTTGACCCCGATCGCCTCCCAGGTATAGAGG
AGAAGCGAGGCGCGTACCGAGCGATGCTCGCCTGCCCGACTCACTCGATA
AGGCTCGAAACGGCGGACCCCCTTGCCAGAGATGCCCTGAAGGACTTCCC
CTTCCCGGTTGACCCCGATCGCCTCCCAGGTATA
back to top