mRNA_L-elsbetiae_contig16773.4563.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16773.4563.1
Unique NamemRNA_L-elsbetiae_contig16773.4563.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16773.4563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16773contigL-elsbetiae_contig16773:488..993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size506
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.9522414-UTR-L-elsbetiae_contig16773:487..6781622815696.9522414-UTR-L-elsbetiae_contig16773:487..678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16773 488..678 +
1691683044.2339916-UTR-L-elsbetiae_contig16773:487..6781691683044.2339916-UTR-L-elsbetiae_contig16773:487..678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16773 488..678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.9635315-CDS-L-elsbetiae_contig16773:678..9931622815696.9635315-CDS-L-elsbetiae_contig16773:678..993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16773 679..993 +
1691683044.2443976-CDS-L-elsbetiae_contig16773:678..9931691683044.2443976-CDS-L-elsbetiae_contig16773:678..993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16773 679..993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16773.4563.1prot_L-elsbetiae_contig16773.4563.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16773 679..993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16773.4563.1

>prot_L-elsbetiae_contig16773.4563.1 ID=prot_L-elsbetiae_contig16773.4563.1|Name=mRNA_L-elsbetiae_contig16773.4563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MSPNLSSPTLLVTVLYTLTSNSPSLFAHLTTLITYRYSTNTKNRTSTKSD
LPGMFHSLHSCPLISTYLLQRRRQQGKLFICLPQPPTTRRAAVLLLLRLP
NRHNA
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mRNA from alignment at L-elsbetiae_contig16773:488..993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16773.4563.1 ID=mRNA_L-elsbetiae_contig16773.4563.1|Name=mRNA_L-elsbetiae_contig16773.4563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=506bp|location=Sequence derived from alignment at L-elsbetiae_contig16773:488..993+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGGCTTTTATTGAAAAATAATAGTAACCGTAGTCGGTCGTACGAGCGG
CGTAATCAAACCAACCGAGTAGCCGTGCAAACGTACGTGCCGTTACCCGG
AAAAATACGCAATCGAGCGGGATAATCTTCCCAAGGTCGTGACATCTTCG
GGAGCTACTCCATAATCGACATGAGGAGGACGGAGTAAGGCATGTCGCCA
AACCTCTCTTCTCCGACCCTGCTGGTGACAGTCTTGTACACCCTTACTTC
AAATTCGCCTTCACTGTTCGCACACTTAACAACGCTTATCACATACCGGT
ATTCGACAAACACAAAAAATCGAACATCAACCAAGTCTGACCTCCCGGGT
ATGTTTCACAGCCTACACTCCTGCCCATTAATCTCCACGTATTTGCTTCA
GCGGAGGCGGCAGCAGGGAAAGCTATTCATTTGTTTACCCCAACCTCCTA
CAACACGGCGTGCCGCTGTGCTGCTGCTGCTGCGCCTCCCCAATCGTCAT
AACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16773:488..993+

>mRNA_L-elsbetiae_contig16773.4563.1 ID=mRNA_L-elsbetiae_contig16773.4563.1|Name=mRNA_L-elsbetiae_contig16773.4563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig16773:488..993+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCCAAACCTCTCTTCTCCGACCCTGCTGGTGACAGTCTTGTACAC
CCTTACTTCAAATTCGCCTTCACTGTTCGCACACTTAACAACGCTTATCA
CATACCGGTATTCGACAAACACAAAAAATCGAACATCAACCAAGTCTGAC
CTCCCGGGTATGTTTCACAGCCTACACTCCTGCCCATTAATCTCCACGTA
TTTGCTTCAGCGGAGGCGGCAGCAGGGAAAGCTATTCATTTGTTTACCCC
AACCTCCTACAACACGGCGTGCCGCTGTGCTGCTGCTGCTGCGCCTCCCC
AATCGTCATAACGCCATGTCGCCAAACCTCTCTTCTCCGACCCTGCTGGT
GACAGTCTTGTACACCCTTACTTCAAATTCGCCTTCACTGTTCGCACACT
TAACAACGCTTATCACATACCGGTATTCGACAAACACAAAAAATCGAACA
TCAACCAAGTCTGACCTCCCGGGTATGTTTCACAGCCTACACTCCTGCCC
ATTAATCTCCACGTATTTGCTTCAGCGGAGGCGGCAGCAGGGAAAGCTAT
TCATTTGTTTACCCCAACCTCCTACAACACGGCGTGCCGCTGTGCTGCTG
CTGCTGCGCCTCCCCAATCGTCATAACGCC
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