mRNA_L-elsbetiae_contig16765.4559.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16765.4559.1
Unique NamemRNA_L-elsbetiae_contig16765.4559.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16765.4559.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 8.990e-19
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   67 GAEKRSWRDMPELRVFAESWKGRAGKAEKAGPSPPAWEVTSLADWAKDTGGGGGGLGGRLPAAPVKVELVREGGWDAAGIK 309
            G ++RSWR+M      A    G AG+A+    SPP W+V+S ADWAK+TGGGGGG  G LP APVKVELV +G WDAAGIK
Sbjct:  790 GWKQRSWREMAGFSSVAACPLG-AGEAKA---SPPLWKVSSFADWAKETGGGGGGARGCLPTAPVKVELVLQGAWDAAGIK 866          
BLAST of mRNA_L-elsbetiae_contig16765.4559.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.150e-15
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   91 DMPELRVFAESWKGRAGKAEKAGPSPPAWEV--TSLADWAKDTGGGGGGLGGRLPAAPVKVELVREGGWDAAGIK 309
            +MP     A   +G AG+A+    SPPAW+V  +S ADWAK+TGGGGGG  G LP APVKVELV +G WDAAGIK
Sbjct:  319 EMPGFGKVAACSQG-AGEAKA---SPPAWKVRVSSFADWAKETGGGGGGPRGCLPTAPVKVELVLQGAWDAAGIK 389          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16765.4559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDG0_ECTSI8.990e-1959.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY4_9PHAE7.150e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16765contigL-elsbetiae_contig16765:522..1654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.724948-CDS-L-elsbetiae_contig16765:523..7421622815696.724948-CDS-L-elsbetiae_contig16765:523..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 524..742 -
1691683044.103329-CDS-L-elsbetiae_contig16765:523..7421691683044.103329-CDS-L-elsbetiae_contig16765:523..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 524..742 -
1622815696.7384255-CDS-L-elsbetiae_contig16765:1474..16541622815696.7384255-CDS-L-elsbetiae_contig16765:1474..1654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 1475..1654 -
1691683044.1168208-CDS-L-elsbetiae_contig16765:1474..16541691683044.1168208-CDS-L-elsbetiae_contig16765:1474..1654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 1475..1654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16765.4559.1prot_L-elsbetiae_contig16765.4559.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16765 524..1654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16765.4559.1

>prot_L-elsbetiae_contig16765.4559.1 ID=prot_L-elsbetiae_contig16765.4559.1|Name=mRNA_L-elsbetiae_contig16765.4559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
DGGPDACESDGDGDGGGDGDGGGAEKRSWRDMPELRVFAESWKGRAGKAE
KAGPSPPAWEVTSLADWAKDTGGGGGGLGGRLPAAPVKVELVREGGWDAA
GIKNAPPTPTPPSLPSNGDEGTASTAAAAAAAG
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mRNA from alignment at L-elsbetiae_contig16765:522..1654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16765.4559.1 ID=mRNA_L-elsbetiae_contig16765.4559.1|Name=mRNA_L-elsbetiae_contig16765.4559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1133bp|location=Sequence derived from alignment at L-elsbetiae_contig16765:522..1654- (Laminarionema elsbetiae ELsaHSoW15)
GATGGCGGGCCTGACGCGTGCGAAAGCGACGGTGATGGGGACGGTGGTGG GGACGGTGATGGTGGCGGTGCGGAGAAGCGGTCGTGGCGCGACATGCCGG AGCTCCGCGTGTTTGCCGAGTCTTGGAAAGGCAGGGCGGGGAAGGCGGAG AAGGCGGGGCCATCGCCGCCTGCGTGGGAGGTGAAGAGCGACGAACGTGC ACTTAGCCAGCGGCTTCCGCGGCGTGGGTTTCTAGCTGCATATGCTTTTG GCGGCATGTGTGGTTGTTGCTGCTGCCGTTGTTGCTTGTTGCTGCCGTTA CCGCTGCTGCCATAGCCGTGGGGCTAAGACTGGGCAGGATTTCAATATTT TGCAACATCTCTGCCGCATAAATTACTGGCCAATCGATCTAGGTATGAGG CGCTTCTTGATGGCCGATCGTTAGGTGTATCCCAGCGCTGTTTCTGCTGT TGACCGCTCGACGGACCTACGATGGTTTGCCCCACCAACCCCCACCGTCT CCTCTAGGTGGAAGTCGGGGATCAGAATATCAGAACTACTTCGAATACAC CCAGGACGACTCATCGTGACGCTGCATACGAGCCCCTGGCCTTCTCGGAA TGATTCACGGGGTTTTTTGAGGGGATAAGAAGGGGGACGTTTCTTTCTCC TTACCCCTCCCCTCTTCTACGTGTGCAGTGCCAACCTGCCCACCTCAAAT ACACTCAGAATATCAGAACTACTTCAAATACACTCAGGACGACTCATCGT GACGCTGCATACGAGCCCCTGGCCTTCTCGGAATGATTCACGGCGTTTTT TGAGGGGATAAGAAGGGGGACGTTTCTTTCTCCTTACCCCTCCCCTCTCC TACGTGTGTAGTACCAACCTGCCCCCCCCCCCCCCCCCCCCCTGCCTCAA ACGACCACGAAGGTTACCTCGCTCGCTGATTGGGCCAAGGACACCGGCGG CGGGGGTGGTGGCCTCGGGGGCCGCCTTCCCGCCGCCCCCGTCAAGGTGG AGTTGGTGCGCGAGGGGGGCTGGGACGCCGCAGGGATAAAAAACGCACCG CCGACGCCGACGCCGCCATCGTTGCCCAGCAACGGGGACGAAGGCACGGC GTCGACGGCGGCGGCGGCGGCGGCAGCGGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16765:522..1654-

>mRNA_L-elsbetiae_contig16765.4559.1 ID=mRNA_L-elsbetiae_contig16765.4559.1|Name=mRNA_L-elsbetiae_contig16765.4559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig16765:522..1654- (Laminarionema elsbetiae ELsaHSoW15)
GATGGCGGGCCTGACGCGTGCGAAAGCGACGGTGATGGGGACGGTGGTGG
GGACGGTGATGGTGGCGGTGCGGAGAAGCGGTCGTGGCGCGACATGCCGG
AGCTCCGCGTGTTTGCCGAGTCTTGGAAAGGCAGGGCGGGGAAGGCGGAG
AAGGCGGGGCCATCGCCGCCTGCGTGGGAGGATGGCGGGCCTGACGCGTG
CGAAAGCGACGGTGATGGGGACGGTGGTGGGGACGGTGATGGTGGCGGTG
CGGAGAAGCGGTCGTGGCGCGACATGCCGGAGCTCCGCGTGTTTGCCGAG
TCTTGGAAAGGCAGGGCGGGGAAGGCGGAGAAGGCGGGGCCATCGCCGCC
TGCGTGGGAGGTTACCTCGCTCGCTGATTGGGCCAAGGACACCGGCGGCG
GGGGTGGTGGCCTCGGGGGCCGCCTTCCCGCCGCCCCCGTCAAGGTGGAG
TTGGTGCGCGAGGGGGGCTGGGACGCCGCAGGGATAAAAAACGCACCGCC
GACGCCGACGCCGCCATCGTTGCCCAGCAACGGGGACGAAGGCACGGCGT
CGACGGCGGCGGCGGCGGCGGCAGCGGGGGTTACCTCGCTCGCTGATTGG
GCCAAGGACACCGGCGGCGGGGGTGGTGGCCTCGGGGGCCGCCTTCCCGC
CGCCCCCGTCAAGGTGGAGTTGGTGCGCGAGGGGGGCTGGGACGCCGCAG
GGATAAAAAACGCACCGCCGACGCCGACGCCGCCATCGTTGCCCAGCAAC
GGGGACGAAGGCACGGCGTCGACGGCGGCGGCGGCGGCGGCAGCGGGG
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