mRNA_L-elsbetiae_contig16765.4559.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16765.4559.1
Unique NamemRNA_L-elsbetiae_contig16765.4559.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig16765.4559.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 8.990e-19
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   67 GAEKRSWRDMPELRVFAESWKGRAGKAEKAGPSPPAWEVTSLADWAKDTGGGGGGLGGRLPAAPVKVELVREGGWDAAGIK 309
            G ++RSWR+M      A    G AG+A+    SPP W+V+S ADWAK+TGGGGGG  G LP APVKVELV +G WDAAGIK
Sbjct:  790 GWKQRSWREMAGFSSVAACPLG-AGEAKA---SPPLWKVSSFADWAKETGGGGGGARGCLPTAPVKVELVLQGAWDAAGIK 866
[Close]
BLAST of mRNA_L-elsbetiae_contig16765.4559.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.150e-15
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   91 DMPELRVFAESWKGRAGKAEKAGPSPPAWEV--TSLADWAKDTGGGGGGLGGRLPAAPVKVELVREGGWDAAGIK 309
            +MP     A   +G AG+A+    SPPAW+V  +S ADWAK+TGGGGGG  G LP APVKVELV +G WDAAGIK
Sbjct:  319 EMPGFGKVAACSQG-AGEAKA---SPPAWKVRVSSFADWAKETGGGGGGPRGCLPTAPVKVELVLQGAWDAAGIK 389
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16765.4559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDG0_ECTSI8.990e-1959.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY4_9PHAE7.150e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16765contigL-elsbetiae_contig16765:522..1654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.724948-CDS-L-elsbetiae_contig16765:523..7421622815696.724948-CDS-L-elsbetiae_contig16765:523..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 524..742 -
1691683044.103329-CDS-L-elsbetiae_contig16765:523..7421691683044.103329-CDS-L-elsbetiae_contig16765:523..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 524..742 -
1622815696.7384255-CDS-L-elsbetiae_contig16765:1474..16541622815696.7384255-CDS-L-elsbetiae_contig16765:1474..1654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 1475..1654 -
1691683044.1168208-CDS-L-elsbetiae_contig16765:1474..16541691683044.1168208-CDS-L-elsbetiae_contig16765:1474..1654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16765 1475..1654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16765.4559.1prot_L-elsbetiae_contig16765.4559.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16765 524..1654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16765.4559.1

>prot_L-elsbetiae_contig16765.4559.1 ID=prot_L-elsbetiae_contig16765.4559.1|Name=mRNA_L-elsbetiae_contig16765.4559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
DGGPDACESDGDGDGGGDGDGGGAEKRSWRDMPELRVFAESWKGRAGKAE
KAGPSPPAWEVTSLADWAKDTGGGGGGLGGRLPAAPVKVELVREGGWDAA
GIKNAPPTPTPPSLPSNGDEGTASTAAAAAAAG
back to top

mRNA from alignment at L-elsbetiae_contig16765:522..1654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16765.4559.1 ID=mRNA_L-elsbetiae_contig16765.4559.1|Name=mRNA_L-elsbetiae_contig16765.4559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1133bp|location=Sequence derived from alignment at L-elsbetiae_contig16765:522..1654- (Laminarionema elsbetiae ELsaHSoW15)
GATGGCGGGCCTGACGCGTGCGAAAGCGACGGTGATGGGGACGGTGGTGG
GGACGGTGATGGTGGCGGTGCGGAGAAGCGGTCGTGGCGCGACATGCCGG
AGCTCCGCGTGTTTGCCGAGTCTTGGAAAGGCAGGGCGGGGAAGGCGGAG
AAGGCGGGGCCATCGCCGCCTGCGTGGGAGGTGAAGAGCGACGAACGTGC
ACTTAGCCAGCGGCTTCCGCGGCGTGGGTTTCTAGCTGCATATGCTTTTG
GCGGCATGTGTGGTTGTTGCTGCTGCCGTTGTTGCTTGTTGCTGCCGTTA
CCGCTGCTGCCATAGCCGTGGGGCTAAGACTGGGCAGGATTTCAATATTT
TGCAACATCTCTGCCGCATAAATTACTGGCCAATCGATCTAGGTATGAGG
CGCTTCTTGATGGCCGATCGTTAGGTGTATCCCAGCGCTGTTTCTGCTGT
TGACCGCTCGACGGACCTACGATGGTTTGCCCCACCAACCCCCACCGTCT
CCTCTAGGTGGAAGTCGGGGATCAGAATATCAGAACTACTTCGAATACAC
CCAGGACGACTCATCGTGACGCTGCATACGAGCCCCTGGCCTTCTCGGAA
TGATTCACGGGGTTTTTTGAGGGGATAAGAAGGGGGACGTTTCTTTCTCC
TTACCCCTCCCCTCTTCTACGTGTGCAGTGCCAACCTGCCCACCTCAAAT
ACACTCAGAATATCAGAACTACTTCAAATACACTCAGGACGACTCATCGT
GACGCTGCATACGAGCCCCTGGCCTTCTCGGAATGATTCACGGCGTTTTT
TGAGGGGATAAGAAGGGGGACGTTTCTTTCTCCTTACCCCTCCCCTCTCC
TACGTGTGTAGTACCAACCTGCCCCCCCCCCCCCCCCCCCCCTGCCTCAA
ACGACCACGAAGGTTACCTCGCTCGCTGATTGGGCCAAGGACACCGGCGG
CGGGGGTGGTGGCCTCGGGGGCCGCCTTCCCGCCGCCCCCGTCAAGGTGG
AGTTGGTGCGCGAGGGGGGCTGGGACGCCGCAGGGATAAAAAACGCACCG
CCGACGCCGACGCCGCCATCGTTGCCCAGCAACGGGGACGAAGGCACGGC
GTCGACGGCGGCGGCGGCGGCGGCAGCGGGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16765:522..1654-

>mRNA_L-elsbetiae_contig16765.4559.1 ID=mRNA_L-elsbetiae_contig16765.4559.1|Name=mRNA_L-elsbetiae_contig16765.4559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig16765:522..1654- (Laminarionema elsbetiae ELsaHSoW15)
GATGGCGGGCCTGACGCGTGCGAAAGCGACGGTGATGGGGACGGTGGTGG
GGACGGTGATGGTGGCGGTGCGGAGAAGCGGTCGTGGCGCGACATGCCGG
AGCTCCGCGTGTTTGCCGAGTCTTGGAAAGGCAGGGCGGGGAAGGCGGAG
AAGGCGGGGCCATCGCCGCCTGCGTGGGAGGATGGCGGGCCTGACGCGTG
CGAAAGCGACGGTGATGGGGACGGTGGTGGGGACGGTGATGGTGGCGGTG
CGGAGAAGCGGTCGTGGCGCGACATGCCGGAGCTCCGCGTGTTTGCCGAG
TCTTGGAAAGGCAGGGCGGGGAAGGCGGAGAAGGCGGGGCCATCGCCGCC
TGCGTGGGAGGTTACCTCGCTCGCTGATTGGGCCAAGGACACCGGCGGCG
GGGGTGGTGGCCTCGGGGGCCGCCTTCCCGCCGCCCCCGTCAAGGTGGAG
TTGGTGCGCGAGGGGGGCTGGGACGCCGCAGGGATAAAAAACGCACCGCC
GACGCCGACGCCGCCATCGTTGCCCAGCAACGGGGACGAAGGCACGGCGT
CGACGGCGGCGGCGGCGGCGGCAGCGGGGGTTACCTCGCTCGCTGATTGG
GCCAAGGACACCGGCGGCGGGGGTGGTGGCCTCGGGGGCCGCCTTCCCGC
CGCCCCCGTCAAGGTGGAGTTGGTGCGCGAGGGGGGCTGGGACGCCGCAG
GGATAAAAAACGCACCGCCGACGCCGACGCCGCCATCGTTGCCCAGCAAC
GGGGACGAAGGCACGGCGTCGACGGCGGCGGCGGCGGCGGCAGCGGGG
back to top